BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30250.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481938 jgi|Araly1|481938|fgenesh2_kg.4__998__AT2G30250.1 2307 0.0
> Ahg481938 jgi|Araly1|481938|fgenesh2_kg.4__998__AT2G30250.1
Length=1458
Score = 2307 bits (1249), Expect = 0.0
Identities = 1396/1464 (95%), Gaps = 22/1464 (2%)
Strand=Plus/Plus
Query 1 AGTTTTATCCTCTTTTTCATTTCA-AGATCAATTTCATAAAAAAGTTTCCTT-TTTTAGC 58
|||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 1 AGTTTTATCCTCTTTTTCATTTCATAGATCAATTTCATAAAAAAGTTT-CTTCTTTTAGC 59
Query 59 GAATCCTCTGTTTT-AGAAATCTTAAAGTTGTCTCCTTT-ATTAAAGACCATCATGTCTT 116
|||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 60 GAATCCTCTGTTTTCTGAAATCTTAAAGTTGTCTCCTTTAATTAAA-ACCATCATGTCTT 118
Query 117 CCACTTCTTTCACCGACCTTCTTGGTTCTTCCGGCGTTGACTGTTACGAAGATGATGAAG 176
| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 119 CGACTTCTTTCACCGACCTCCTTGAATCTTCCGGCGTTGACTGTTACGAAGATGATGAAG 178
Query 177 ACTTGAGAGTTTCTGGGTCGAGTTTTGGTGGGTACTATCCAGAGAGAACCGGGTCTGGTT 236
|||||| |||||| ||||||| |||||||||||| |||| ||||||||||||||| ||||
Sbjct 179 ACTTGATAGTTTCCGGGTCGATTTTTGGTGGGTATTATCAAGAGAGAACCGGGTCGGGTT 238
Query 237 TACCTAAGTTCAAGACGGCTCAACCACCA-CCTCTTCCGATTTCACAATCTTCTCATAAC 295
|||||||||||||||||||||||||| || ||| |||||||||||| |||||| || |||
Sbjct 239 TACCTAAGTTCAAGACGGCTCAACCA-CATCCTATTCCGATTTCACCATCTTCACACAAC 297
Query 296 TTCACTTTCTCCGATTACCTTGATTCTCCTCTGCTTCTCAGCTCCTCACACAGTTTGATA 355
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 TTCACTTTCTCCGATTTCCTTGATTCTCCTCTGCTTCTTAGCTCCTCACACAGTTTGATA 357
Query 356 TCTCCAACAACAGGAACGTTTCCATTGCAAGGCTTTAATGGAACAACAAACAATCACTC- 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCTCCAACAACAGGAACGTTTCCATTGCAAGGCTTTAATGGAACAACAAACAATCACTCG 417
Query 415 -A-GATTTTCCCTGGCAGCTACAATCTCAACCATCAAACGCTTCTTCTGCTTTGCAAGAA 472
| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 418 GATCATTTTCCTTGGCAGCTACAATCGCAACCCTCAAACGCTTCTTCTGCTTTGCAAGAA 477
Query 473 ACATATGGTGTTCAAGATCACGAGAAGAAGCAGGAGATGATTCCTAATGAGATTGCAACA 532
|||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 478 ACATTTGGTGTTCAAGATCACCAGAAGAAGCAGGAGATGATTCCTCATGAGATTGCAACA 537
Query 533 CAAAACAACAATCAAAGTTTTGGAACAGAACGTCAGATAAAGATACCAGCATACATGGTG 592
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 538 CAAAACAACAATCAAAGTTTTGGAACAGATCGTCAGATAAAGATACCAGCATACATGGTG 597
Query 593 AGTAGGAACTCTAATGATGGTTATGGTTGGAGAAAATACGGTCAGAAACAAGTGAAGAAG 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGTAGGAACTCTAATGATGGTTATGGTTGGAGAAAATACGGTCAGAAACAAGTGAAGAAA 657
Query 653 AGCGAAAACCCTAGGAGTTACTTCAAGTGTACGTATCCTGATTGTGTTTCCAAGAAGATT 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGCGAAAACCCTAGGAGTTACTTCAAGTGTACGTATCCTGATTGTGTTTCCAAGAAGATT 717
Query 713 GTTGAGACGGCTTCTGATGGACAGATCACTGAGATCATTTATAAAGGTGGTCATAATCAT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GTTGAGACGGCTTCTGATGGACAGATCACTGAGATCATTTATAAAGGTGGTCATAATCAT 777
Query 773 CCTAAGCCTGAGTTCACCAAGAGACCATCTCAATCTTCATTACCATCATCGGTTAATGGG 832
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 778 CCTAAGCCTGAGTTCACCAAGAGACCATCGCAATCTTCATTACCATCATCGGTTAATGGG 837
Query 833 AGGCGCTTGTTTAATCCTGCTTCTGTTGTTAGTGAACCTCATGATCAATCAGAGAACTCT 892
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 AGGCGCTTGTTTAATCCTGCTTCTGTTGTTAGTGAACCACATGATCAATCAGAGAACTCT 897
Query 893 TCGATTTCGTTTGACTATAGTGATCTTGAGCAGAAAAGTTTTAAATCAGAGTATGGTGAG 952
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 898 TCGATTTCGTTTGACTATAGTGATCTTGAGCAGAAAAGCTTTAAATCAGAATATGGTGAG 957
Query 953 ATAGATGAAGAGGAGGAACAACCTGAGATGAAGAGGATGAAAAGAGAAGGTGAAGATGAA 1012
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 958 ATTGATGAAGAGGAGGAACAACCTGAGATTAAGAGAATGAAAAGAGAAGGTGAAGATGAA 1017
Query 1013 GGGATGTCTATAGAAGTAAGCAAAGGAGTTAAAGAGCCAAGAGTTGTGGTTCAGACAATA 1072
|| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1018 GGAATGTCTATAGAAGTAAGCAGAGGAGTGAAAGAGCCAAGAGTTGTGGTTCAGACAATA 1077
Query 1073 AGTGATATTGATGTTCTTATAGATGGCTTTAGATGGAGGAAATATGGTCAAAAAGTTGTC 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AGTGATATTGATGTTCTTATAGATGGCTTTAGATGGAGGAAATATGGTCAAAAAGTTGTC 1137
Query 1133 AAAGGAAATACTAATCCAAGGAGCTACTACAAGTGCACATT-CCAAGGTTGTGGAGTGAA 1191
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1138 AAGGGAAATACTAATCCAAGGAGCTACTACAAGTGCAC-TTACCAAGGTTGTGGAGTGAG 1196
Query 1192 GAAGCAAGTGGAAAGATCCGCAGCAGACGAGAGAGCAGTTCTCACTACCTATGAAGGAAG 1251
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1197 GAAGCAAGTGGAAAGATCCGCAGCAGACGAGAGAGCTGTTCTCACTACCTATGAAGGAAG 1256
Query 1252 ACACAATCACGATATCCCAACCGCGCTACGTCGCTCGTGAAA-------TTATTGGGACT 1304
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1257 ACACAATCACGATATCCCAACCGCGCTACGTCGCTCATGAAAAACAACATTCTTGGGACT 1316
Query 1305 TAGTCACTAGTAATATGATTTAGGCTTTCTaaaaacaaaaaaTCTTACTATGGCTTATCT 1364
|||||||||||||||| |||||||||||||||||| || | ||||||||||||||||||
Sbjct 1317 TAGTCACTAGTAATATCATTTAGGCTTTCTAAAAA-AATAC-TCTTACTATGGCTTATCT 1374
Query 1365 TTTGTGCTCATTCACAGTTTGTTTATTTGTTTGTTACACAGTCAATACTTTGTTTTGTAC 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TTTGTGCTCATTCACAGTTTGTTTATTTGTTTGTTACACAGTCAATACTTTGTTTTGTAC 1434
Query 1425 AGAGTGGTGCTTAGTAGTGTTTTT 1448
||||||||||||| |||| |||||
Sbjct 1435 AGAGTGGTGCTTAATAGTTTTTTT 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5