BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30260.1
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320780 jgi|Araly1|320780|fgenesh1_pm.C_scaffold_4000837 1122 0.0
Ahg919413 jgi|Araly1|919413|scaffold_100694.1 529 2e-149
> Ahg320780 jgi|Araly1|320780|fgenesh1_pm.C_scaffold_4000837
Length=699
Score = 1122 bits (607), Expect = 0.0
Identities = 669/699 (96%), Gaps = 4/699 (1%)
Strand=Plus/Plus
Query 76 ATGTTAACGGCAGATATACCACCGAATCAATCAATCTACATCCAAAACCTCAACGAAAGG 135
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGTTAACGGCAGATATACCACCGAATCAATCAATCTACATCCAAAACCTCAACGAAAAG 60
Query 136 ATCAAGAAAGAGGAATTGAAGAGATCTCTTTACTGTTTGTTCTCTCAGTTTGGGAGGATA 195
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCAAGAAAGAAGAATTGAAGAGATCTCTTTACTGTTTGTTCTCTCAGTTTGGGAGGATA 120
Query 196 CTTGATGTGGTTGCTTTGAAGACTCCGAAGCTCCGAGGACAAGCTTGGGTTACTTTTAGT 255
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 121 CTTGATGTGGTTGCTTTGAAGACTCCGAAACTCCGTGGACAAGCTTGGGTTACATTTAGT 180
Query 256 GAAGTCACTGCTGCTGGTCA-TGCTGTTCGTCAGATGCAAAATTTTCCCTTCTATGATAA 314
|||||||| |||||| | || ||| |||||||||||||||||||| |||||||| |||||
Sbjct 181 GAAGTCACAGCTGCTAG-CAATGCCGTTCGTCAGATGCAAAATTTCCCCTTCTACGATAA 239
Query 315 ACCAATGCGCTTACAATATGCAAAAGCAAAGTCAGATTGTCTAGCTAAAGCTGAGGGAAC 374
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GCCAATGCGCTTACAATACGCAAAAGCAAAGTCAGATTGTCTAGCTAAAGCCGAGGGAAC 299
Query 375 TTTCGTTCCaaaagataagaagaggaagcaagaagaaaaagttgaaagaaagcgtgaaga 434
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTCATTCCAAAAGATAAGAAGAGGAAGCAAGAAGAAAAAGTTGAAAGAAAGCGTGAAGA 359
Query 435 TTCCCAACGACCAAACACGGCTAATGGCCCAAGTGCTAATGGTCCAAGTGCCAATAACGG 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 ATCCCAACGACCAAACACGGCTAATGGCCCAAGTGCTAATGGTCCAAGTGCCAATAATGG 419
Query 495 AGTCCCTGCGCCTTCGTTCC-AGCCGAGCGGGCAAGAAACAATGCCACCAAACAACATAC 553
|||||||||||| || |||| | ||||||||||||||| | |||||||||||||||||||
Sbjct 420 AGTCCCTGCGCCATCCTTCCCA-CCGAGCGGGCAAGAAGCGATGCCACCAAACAACATAC 478
Query 554 TCTTCATTCAGAATCTCCCACACGAGACAACAAGCATGATGCTACAGCTTCTCTTCGAAC 613
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 TCTTCATTCAGAATCTCCCACACGAGACAACAAGCATGATGCTTCAGCTTCTCTTCGAAC 538
Query 614 AGTACCCTGGATTCAAAGAGATAAGAATGATCGACGCAAAACCAGGAATCGCGTTTGTAG 673
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 AATACCCTGGATTCAAAGAGATAAGAATGATCGACGCAAAACCAGGAATCGCGTTTGTGG 598
Query 674 AGTACGAAGATGATGTTCAAGCTTCCATAGCTATGCAACCTCTTCAAGGTTTCAAAATCA 733
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTATGAAGACGATGTTCAAGCTTCCATAGCTATGCAACCTCTTCAAGGTTTCAAAATCA 658
Query 734 CTCCCCAGAATCCAATGGTCATCTCTTTCGCCAAGAAAT 772
|||||||||||||||||||||||||||| ||||||||||
Sbjct 659 CTCCCCAGAATCCAATGGTCATCTCTTTTGCCAAGAAAT 697
> Ahg919413 jgi|Araly1|919413|scaffold_100694.1
Length=774
Score = 529 bits (286), Expect = 2e-149
Identities = 599/743 (81%), Gaps = 50/743 (7%)
Strand=Plus/Plus
Query 61 CGAGCTCACTCG-AAGATGTTAACGGCAGATATACCACCGAATCAATCAATCTACATCCA 119
|||||||| | | |||||||||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 5 CGAGCTCAGTTGAAAGATGTTAACGGCTGATATACCACCAAATCAGTCAATCTACATAAA 64
Query 120 AAACCTCAACGA-AAGGATCAAGAAAGAGGAATTGAAGAGATCTCTTTACTGTTTGTTCT 178
||| |||| || || |||||||||||| || |||||||||||||||||||||||||||
Sbjct 65 AAATATCAATGAGAA-GATCAAGAAAGAAGAGCTGAAGAGATCTCTTTACTGTTTGTTCT 123
Query 179 CTCAGTTTGGGAGGATACTTGATGTGGTTGCTTTGAAGACTCCGAAGCTCCGAGGACAAG 238
|||| ||||| |||||||||||||||||||| || |||||||| |||||||| |||||||
Sbjct 124 CTCATTTTGGAAGGATACTTGATGTGGTTGCGTTAAAGACTCCTAAGCTCCGGGGACAAG 183
Query 239 CTTGGGTTACT-TTTAGTGAAGTCACTGCTGCTGGTCATGCTGTTCGTCAGATGCAAAAT 297
| |||||| | |||| ||||||||| |||||| |||| || || | ||||||||||||
Sbjct 184 CATGGGTT-GTGTTTACTGAAGTCACAGCTGCTAGTCACGCCGTCCTTCAGATGCAAAAC 242
Query 298 TTTCCCTTCTATGATA-------AAC-C-AATG---C-GC--TTACAATATGCAAAAGCA 342
||||| |||||||||| | | ||| | || |||||||||||||| ||
Sbjct 243 TTTCCATTCTATGATACCTTTTCCTCTCTTATGTTCCAGCGGATACAATATGCAAAATCA 302
Query 343 AAGTCAGA-T-TGTCTAGCTAAAG-CTGAGGGAACTTTCGTTCCaaaagataagaagagg 399
| |||||| | ||| || |||||| | |||| ||||| || || ||||| ||||||| |
Sbjct 303 ACGTCAGATTATGT-TA-CTAAAGCCCAAGGG-ACTTTTGTACCGAAAGAAAAGAAGATG 359
Query 400 aagcaagaagaaaaagttgaaagaaagcgtgaagaTTCCCAACGACCAAACACGGCTAAT 459
||||||||||| ||||||||||| |||| | | || | || | |||| | | ||
Sbjct 360 AAGCAAGAAGAGAAAGTTGAAAGGAAGC--G-ACATGCTGAA-G---AAACTCAAC-AA- 410
Query 460 GGCCCAAG--TG-CTAATGGTC-CAAGTGC-CAATAACGGAGTCCCTGCGCCTTCGTTCC 514
||||| || ||||||| | ||| | | | | |||||| | | || |||| | ||||
Sbjct 411 ---CCAAGCATGCCTAATGG-CGCAACTACTC-AGAACGGAATGCATGTGCCTCCTTTCC 465
Query 515 AGCCGAGCGGGCAAGAAACAATGCCACCAAACAACATACTCTTCATTCAGAATCT-CCCA 573
||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 466 AGCCGAGTGGGCAAGACACGATGCCACCAAACAACATACTCTTCATTCATAATCTTCCCA 525
Query 574 CACGAGACAACAAGCATGATGCTACAGCTTCTCTTCGAACAGTACCCTGGATTCAAAGAG 633
|||| || ||||||||||| ||||| || || || || ||||| |||||||| |||
Sbjct 526 TT-GAGATGACGAGCATGATGCTTCAGCTGCTATTTGAGCAATACCCAGGATTCAAGGAG 584
Query 634 ATAAGAATGATCGACGCAAAACCAGGAATCGCGTTTGTAGAGTACGAAGATGATGTTCAA 693
|||||||||||||| |||||||| ||||| |||||||| || || ||||| ||||||||
Sbjct 585 ATAAGAATGATCGAAGCAAAACCCGGAATTGCGTTTGTGGAATATGAAGACGATGTTCA- 643
Query 694 G-CTTCCATAGCTATGCAACCTCTTCAAGGTTT-CAAAATCACTCCCCAGAATCCAATGG 751
| ||||||| || |||||| ||||||| ||||| ||| |||||||| |||||||||||||
Sbjct 644 GTCTTCCATGGCCATGCAAGCTCTTCAGGGTTTTCAAGATCACTCCACAGAATCCAATGG 703
Query 752 TCATCTCTTTCGCCAAGAAATGA 774
|| ||||||| |||||||| |||
Sbjct 704 TCGTCTCTTTTGCCAAGAAGTGA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34463116968
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5