BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30270.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933524 jgi|Araly1|933524|scaffold_401512.1 843 0.0
> Ahg933524 jgi|Araly1|933524|scaffold_401512.1
Length=589
Score = 843 bits (456), Expect = 0.0
Identities = 541/581 (93%), Gaps = 9/581 (2%)
Strand=Plus/Plus
Query 185 TGTTATTAGAGACTATGTAAATGGCTGATTCCGAGACTCCGTATCACCCCGACCCTGAGG 244
||||| ||||||||||| |||||| |||||||| ||||| ||| ||||||||| |||||
Sbjct 2 TGTTA-GAGAGACTATGTGAATGGCGGATTCCGATACTCCTTATAACCCCGACCTTGAGG 60
Query 245 ATCTCCGGCGTATACCAGTCGATCTCTTCGCTTCCAA-AAAGCTTCCCGGACTTTCCTCC 303
|||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 61 ATCTCCGGCGAATACCAGTTGATCTCTTCGCTTCCAAGAAA-CTTCCCGGACTTTCCTCC 119
Query 304 GGCGATCTCGGATTTGCCGATTCTTCCGAACATCTCGTCTTCATCCTCCGCAAAtcttct 363
||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 120 GGCGATCTCGGGTTTGCCGATTCTTCTGAAAATCTCGTCTTCATCCTCCGCAAATCTTCT 179
Query 364 tcctccttgaaatctctccttgattcctccggagttcctctcttctccatctctcgtctc 423
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 TCCTCCTTGAAATCTCTCCTTGATTCCTCCGGTGTTCCTCTCTTCTCCATCTCTCGTCTC 239
Query 424 cACAATGGAGTGTGGGAATTACATAAAGGAGATGTGGAAAAGCGTAAGGATTTGGTTCTA 483
||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 240 CACAATGGAATGTGGGAGTTACATAAAGGAGATGTCGAAAAGCGTAAGGAGTTGGTTCTA 299
Query 484 ACGGTGAAGCGGACATCGAA-AAGATTCAGTAAGACAGAGTCAGAGGTCTCTTTTGCTGG 542
|||| ||||||||||||||| || ||||||||||||||||| | ||||||||||||| ||
Sbjct 300 ACGGCGAAGCGGACATCGAACAA-ATTCAGTAAGACAGAGTTAAAGGTCTCTTTTGCAGG 358
Query 543 AGAATCGTCCGAAA-ATCTTGTTATCAAAGGT-GTTCCCTTTCAGAAATCTTGTACCATT 600
||||||||| | || ||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 359 AGAATCGTC-GCAACATCTTGTTATCAAAGGTTGT-CCCTTTCAGAAATCATGTACCATT 416
Query 601 TATAGTCAAGATTCCATTGTTGCACAGACGAGTTTGATGTACAAGCTGAGACAGATTTAC 660
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 417 TATAATCAAGATTCCATTGTTGCTCAGACGAGTTTGATGTACAAGCTGAGACAGATTTAC 476
Query 661 GTAGGGAGAAGCAAGTTCCGGTTAACGATATTTCCTGGATCCATCGATCATTCACTAGTA 720
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 477 GTAGGAAGAAGCAAGTTCCGGTTAACGATATTTCCAGGATCCATCGATCATTCTCTAGTA 536
Query 721 GTCGCAATGGTTGCCATATTTCTTCAAGGATGAAAGTGAAA 761
|| ||||||||||| || |||||||||||||||||||||||
Sbjct 537 GTAGCAATGGTTGCTATGTTTCTTCAAGGATGAAAGTGAAA 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5