BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30280.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900805 jgi|Araly1|900805|Al_scaffold_0004_1455 1594 0.0
> Ahg900805 jgi|Araly1|900805|Al_scaffold_0004_1455
Length=1056
Score = 1594 bits (863), Expect = 0.0
Identities = 995/1056 (94%), Gaps = 20/1056 (2%)
Strand=Plus/Plus
Query 105 ATGGATGGGGTGGGTGAAAG---TTCGACTCAAAATGAGGTAGAAGAGAAGCCTGTGATT 161
||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGATGTGGTGGGGGAAAGCTCTTCGACTCAAAATGAGGTAGGAGAGAAGCCTGTGATT 60
Query 162 GTTAGAGTTAAGCGAAAAGTTGGACAGTCTCTGCTCGATGCTTTCTGGTTGGAGATAAAT 221
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 GTTAGAGTTAAGCGAAAAGTTGGACAGTCTTTGCTCGATGCTTTCTGGTTGGAGATAAAT 120
Query 222 GAAAGACCACTCAAACGGCCGACTCTGGATTTCTCAAAGCTATCTATTTCAGATTCAG-G 280
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |
Sbjct 121 GAAAGACCACTCAAACGGCCCACTCTGGATTTATCAAAGCTATCTATTTCAGATTC-GTG 179
Query 281 GGAGAGAGGTCCTTCTGTGGCAGAGGATGTGAAACCGAAGAAGGTGCTAGTGCGGCATTT 340
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 TGAGAGAGGTCCTTCTGTGGCAGAGGATGTGAAACCGAAGAAGGTGCTGGTGCGGCATTT 239
Query 341 GGAGACAGTTACGGACTCTGAAACCACAGCTGATATTATCCACTCTTTCTTTGAGTCTGA 400
||||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||
Sbjct 240 GGAGACAGTCACGGACTCTGAAACCACCGCTGACATTATCCACTCTCTCTTTGAGTCTGA 299
Query 401 TCATAATGAGAAAAGTTGCAGTAAAGGAAAGTTTGAGGAGAGGAAAATTGCTTTCAAGAA 460
|| || ||||||||||||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct 300 TCTTACTGAGAAAAGTTGCAGCAAAGGAAAGTTTGAGGAGCGGAAATTTGCTTTCAAGAA 359
Query 461 AGACAATAGAAAGGAACAGCGCCTGACCAAATCTGTACAAAAGCAACAGATTGCTTCAGA 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 360 AGACAATAGAAAGGAACAGCGCCTGACCAAATCTGTACAAAAGCAACAGATTGCTGCA-A 418
Query 521 -GAATGCTCGGTTTGAGCAAATATGGCGGAGTAGGAAGGGAAACAAGGAAGGCATCCATG 579
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGAATGCTCGGTTTGAGCAAATATGGCGGAGTAGGAAGGGAAACAAGGAAGGCATCCATG 478
Query 580 AGAAGTGTCATTTCTTTGACGTTATTCGTGTTGATACTGAAGAAAGACGAGACAATGCAC 639
| ||||| ||||||||||||||||||||||||||| |||||||||||| ||||| || ||
Sbjct 479 ATAAGTGCCATTTCTTTGACGTTATTCGTGTTGATGCTGAAGAAAGACAAGACAGTGAAC 538
Query 640 AAGAGTTTACATCCCT-GGAGGACCAGAAAATGCTCGCTAGTTTCTTGCCTCTCCTTAGA 698
|||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 539 AAGAGTTTACAT-CCTCGGAGGACCAGAAAATACTCGCTAGTTTCTTGCCTCTCCTTAGA 597
Query 699 GAATGTATTCCAACAGCAGCTGAAGAGATTGAAGCTGATATACAATCTAGTCACACCGAA 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAATGTATTCCAACAGCAGCTGAAGAGATTGAAGCTGATATACAATCTAGTCACACCGAA 657
Query 759 GAATACGTTTATGATTATTATGCTGTGAACGAAGAGATGGATATCAGCGAAGATAGTTCC 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAATACGTTTATGATTATTATGCTGTGAACGAAGAGATGGATATCAGCGAAGATAGTTCC 717
Query 819 AAGAATCAGTTTCCTCTTGTCATAGTAGAGGATGAAGAAGAATTCTGTGATGGATCTGAT 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AAGAATCAGTTTCCTCTTGTCATAGTAGAGGATGAAGAAGAATTCTGTGATGGATCTGAT 777
Query 879 GAATCAGACTACGACTCTGAAGATTCAAACGCTGAAGATCATCCAAAGACTGATTACCCA 938
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 778 GAATCAGACTTTGACTCTGAAGATTCAAACGCTGAAGATCATCCAAAGACCGATTACCCA 837
Query 939 GAGGAG------gaagaaga--ag-aagaagaagaagatgatgatgatgatgatgatgat 989
|| ||| ||||| || || ||||||||||||| || ||||||||||||||||||
Sbjct 838 GAAGAGATCTCTGAAGACGAGGAGGAAGAAGAAGAAGAAGAAGATGATGATGATGATGAT 897
Query 990 gaatcagaagaagaaaagaGTGAAGCCTCTGATGAATCAGACGACGAGGAGACTTCA-AA 1048
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 898 GAAACAGAAAAAGAAAAGAGTGAAGCCTCTGATGAATCAGACGACGAGGAGACTTCACAA 957
Query 1049 ACGACATGTGAGAAGTGTCCTTGGAGATGACGAGTTTGATGATTACGCAGAGGATGTGTA 1108
| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 958 A-GACATGTGAGAAGGGTCCTTGGAGATGACGAGTTTGATGATTACGAAGAGGATGTGAA 1016
Query 1109 TGGTTACAGCGAGAGCGATGAGGAGTTTGAGTCTTA 1144
|| ||| || |||||||| |||||||||||||||||
Sbjct 1017 TGATTATAGGGAGAGCGAGGAGGAGTTTGAGTCTTA 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5