BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30290.2
Length=2107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481940 jgi|Araly1|481940|fgenesh2_kg.4__1000__AT2G30290.1 2880 0.0
> Ahg481940 jgi|Araly1|481940|fgenesh2_kg.4__1000__AT2G30290.1
Length=1872
Score = 2880 bits (1559), Expect = 0.0
Identities = 1772/1876 (94%), Gaps = 10/1876 (1%)
Strand=Plus/Plus
Query 132 ATGAGGACGACGAATGTATGGTTAGTTGTAATAGTATGGGTAACGGTGGGGTGGAGTTCA 191
|||||| ||| ||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 1 ATGAGGGCGAAGAATGTACGGTTAGTTGTAATAGTATGGGT---GATGGGGTGGAGTTCC 57
Query 192 TGCACAGGGAGGTTCGTTGTGGAGAAGAACAACCTCCGAGTGACTTCGCCGGAGTCCATC 251
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 58 TGCACAGGGAGGTTCGTTGTGGAGAAGAACAACCTCCGGGTGACTTCACCGGAGTCCATC 117
Query 252 AGAGGAGTCTATGAATGTGCCCTCGGAAATTTTGGCGTCCCTCAATACGGCGGAAGCATG 311
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 118 AGAGGAGTCTACGAATGCGCCCTCGGAAATTTTGGCGTCCCTCAATACGGGGGAAGCATG 177
Query 312 TCCGGTGCGGTGGTTTATCCTAAAACTAATCAGAAAGCTTGCAAGAACTTTGACGATTTT 371
|||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||
Sbjct 178 TCCGGTGCGGTGGTTTATCCTAAAGCTAACCAGAAAGGTTGCAAGAACTTTGACGATTTT 237
Query 372 GAGATTTCTTTCAGATCCAGAGTCGCTGGATTGCCCACATTCGTTCTTGTGGATCGAGGA 431
||||| |||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 238 GAGATCTCTTTCCGATCCAGAGTCGCTGGATTGCCCACATTCGTTCTCGTCGATCGAGGA 297
Query 432 GATTGTTACTTTACTTTGAAGGCGTGGAATGCGCAACGAGCTGGTGCCGCAACCATCTTG 491
||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 298 GATTGTTACTTCACTTTAAAGGCGTGGAACGCACAACGAGCTGGTGCCGCAACCATCTTG 357
Query 492 GTGGCGGATAACAGACCCGAGCAACTCATCACCATGGACGCACCAGAGGATGAGACGTCA 551
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTAGCGGATAACAGGCCTGAGCAACTCATCACCATGGACGCACCAGAGGATGAGACGTCA 417
Query 552 GATGCAGATTACCTACAAAATATCACAATTCCTTCAGCATTAGTGAGCAGATCTCTAGGG 611
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 GATGCAGATTACCTACAAAATATCACAATTCCTTCAGCATTGGTGAGCAGATCTCTAGGG 477
Query 612 AGTGCCATCAAAACGGCCATAGCTCATGGCGATCCCGTTCATATAAGTCTAGACTGGCGG 671
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 AGTGCCATCAAAACGGCCATAGCTCATGGCGAGCCCGTTCATATAAGTCTAGACTGGCGG 537
Query 672 GAGGCTCTTCCACATCCAAACGATCGAGTAGCTTACGAGTTATGGACCAACAGTAATGAT 731
|||||||||||||| |||||||||||||||||| ||||| |||||||||| || ||||||
Sbjct 538 GAGGCTCTTCCACACCCAAACGATCGAGTAGCTGACGAGCTATGGACCAATAGCAATGAT 597
Query 732 GAATGCGGATCCAAATGTGATGCACAGATCCG-GTTTCTTAAGAGGTTTAAAGGAGCTGC 790
|||||||||||||||||||| |||||||| | |||||| ||||| || |||||||||||
Sbjct 598 GAATGCGGATCCAAATGTGACGCACAGAT-TGAGTTTCTCAAGAGATTCAAAGGAGCTGC 656
Query 791 TCAGATTCTTGAGAAAGGAGGCTACACTCGCTTCACTCCCCATTACATCACCTGGTATTG 850
|||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |||
Sbjct 657 TCAGATTCTTGAGAAAGGAGGCTACACTCGCTTCACTCCCCACTACATTACATGGTTTTG 716
Query 851 TCCTGAAGCGTTTCTGGCAAGTAGACAATGTAAAACACAATGCATTAATGGTGGAAGGTA 910
||||||||| |||||||||||||||||||||||| |||||||||| || |||||| ||
Sbjct 717 TCCTGAAGCATTTCTGGCAAGTAGACAATGTAAATCACAATGCATCAA---TGGAAGATA 773
Query 911 TTGTGCTCCGGACCCTGAGCAAGATTTCTCCAGAGGATACAATGGAAAAGACGTAATTAT 970
||||||||| ||||| || ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 774 TTGTGCTCCCGACCCGGAACAAGATTTCTCTAGAGGATACAATGGGAAAGACGTAATTAT 833
Query 971 TCAGAATTTACGCCAAGCTTGCTTCTTTAGAGTGACTAATGAAAGTGGAAAGCCTTGGCT 1030
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 834 TCAAAATTTACGCCAAGCTTGCTTCTTTAGAGTGACCAATGAAAGTGGAAAGCCTTGGCT 893
Query 1031 TTGGTGGGATTATGTCACCGACTTCGCCATTCGTTGTCCCATGAAAGAGGAGAAGTACAA 1090
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 894 TTGGTGGGATTACGTCACCGACTTCGCCATTCGTTGTCCCATGAAAGAGGAGAAATACAA 953
Query 1091 CAAGAAATGTGCTGATCAAGTCATTCAATCTCTTGGAGTTGATGTGAAGAAAATTGACAA 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CAAGAAATGTGCTGATCAAGTCATTCAATCTCTTGGAGTTGATGTGAAGAAAATTGACAA 1013
Query 1151 ATGCATCGGAGACATTGACGCAAATGCTGAAAATCCTGTTCTTAAAGAAGAACAAGTTGC 1210
|||||| ||||||||||| |||||| | |||||||| ||||||||||||||||||| |||
Sbjct 1014 ATGCATTGGAGACATTGAAGCAAATACCGAAAATCCCGTTCTTAAAGAAGAACAAGATGC 1073
Query 1211 ACAAGTTGGGAAAGGCT-CGAGAGGAGATGTGACGATACTACCAACTATTGTGATAAACA 1269
||||||||| ||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1074 ACAAGTTGGAAAAGG-TCCGCGAGGAGATGTGACGATACTACCAACTATTGTGATAAACA 1132
Query 1270 ACAGACAATATAGAGGGAAATTGCAAAGATCGGCCGTGCTTAAGGCCCTTTGCTCAGGGT 1329
| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1133 ATAGACAATATAGAGGGAAGTTGCAGAGATCGGCCGTGCTTAAGGCTCTTTGCTCAGGGT 1192
Query 1330 TTCGTGAGACGACGGAGCCACCCATTTGTTTAACCGAAGACATAGAAACCAATGAGTGTT 1389
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1193 TTCGTGAGACGACTGAGCCACCAATTTGTTTAACCGAAGACATAGAAACCAATGAGTGTT 1252
Query 1390 TACAAAACAATGGAGGGTGTTGGGAAGATAAAACAACCAACATTACAGCTTGCAGGGACA 1449
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1253 TACAAAACAACGGAGGGTGTTGGGAAGATAAGACAACCAACATTACAGCTTGCAGGGACA 1312
Query 1450 CTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACG 1509
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1313 CTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTAGGTGACG 1372
Query 1510 GTTATACACATTGTGAAGCTTCGGGGGCACTACGTTGTGGCATAAACAATGGAGGATGTT 1569
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1373 GTTATACACATTGTGAAGCTTCCGGGGCACTACGTTGTGGTATAAACAATGGAGGGTGTT 1432
Query 1570 GGAAACAAACTCAAATGGGAAAAACATATTCCGCTTGCCGTGATGATCATTCGAAAGGCT 1629
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1433 GGAAACAAACTCAAATGGGAAAAACATATTCTGCTTGCCGTGATGATCATTCGAAAGGCT 1492
Query 1630 GCAAATGTCCTCCTGGATTCATAGGGGATGGACTCAAAGAGTGCAAAGATGTGAATGAGT 1689
|||||||||| || ||||||| ||| |||||||||||||| ||| |||||||||||||||
Sbjct 1493 GCAAATGTCCCCCCGGATTCAAAGGAGATGGACTCAAAGACTGCCAAGATGTGAATGAGT 1552
Query 1690 GTGAGGAGAAAACAGCGTGCCAATGTCGCGATTGCAAATGCAAAAACACATGGGGAAGCT 1749
||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||
Sbjct 1553 GTGAGGAGAAAACAGCGTGTCAATGTCGCGGTTGCAAATGCAAGAACACATGGGGAAGCT 1612
Query 1750 ATGAATGTAGTTGCAGCGGAAGCTTGCTTTACATAAGAGAACACGACATTTGCATAAATA 1809
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1613 ATGAATGTAGTTGCAGCGGAAGCTTGCTTTACATCAGAGAACACGACATTTGCATAAACA 1672
Query 1810 GAGATGCAAGAGGAGATTTCAGTTGGGGAGTGATATGGATAATAATAATGGGATTAGGTG 1869
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 AAGATGCAAGAGGAGATTTAAGTTGGGGAGTGATATGGATAATAATAATGGGATTAGGTG 1732
Query 1870 CAGCTGCTTTAGGAGCTTACACTGTTTATAAATACAGAATTCGGACATATATGGACTCAG 1929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 CAGCTGCTTTAGGAGCTTACACTGTTTATAAATACAGAATTCGGACATATATGGACTCAG 1792
Query 1930 AGATAAGAGCTATAATGGCACAATACATGCCTCTTGATAATAATCCCAATACTCAACTTT 1989
|||||||||| |||||||| ||||| |||||||| ||||| ||||||| ||||||||||
Sbjct 1793 AGATAAGAGCGATAATGGCGCAATATATGCCTCTCGATAACCATCCCAACACTCAACTTT 1852
Query 1990 CTTCTCAACTAGAGTT 2005
||||||||||||||||
Sbjct 1853 CTTCTCAACTAGAGTT 1868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79265799845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5