BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30300.1
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320784 jgi|Araly1|320784|fgenesh1_pm.C_scaffold_4000841 2344 0.0
> Ahg320784 jgi|Araly1|320784|fgenesh1_pm.C_scaffold_4000841
Length=1503
Score = 2344 bits (1269), Expect = 0.0
Identities = 1427/1505 (95%), Gaps = 4/1505 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCGGAAGATTCTCCCGTGGTTGAGTCTAGTCGCTATTCTCTGGCTTCAATCTTTC 60
||||||| |||| |||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 1 ATGTCTCTGAAGTTTCTCCCGTGGTTGAGCCTAGTCGCTCTTCTTTGGCTTCAATCTTTC 60
Query 61 AATGGCACCAACTTGAGTTTCCCAGCTTACTCTTCACAGCTTAAAGAGCTTCTCAAAATC 120
||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 61 AATGGCACCAACTTGAGTTTCCCTGCTTATTCTTCACAGCTTAAAGAGTTTCTCAAAATC 120
Query 121 TCCCAGTTTAAGCTAAATTATCTTTCTTTCGCCTCCGACGCTGGAAAAGTCCTAGGTTTT 180
|| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 121 TCTCAGTTTAAGCTTAATTATCTCTCTTTCGCCTCTGACGCTGGAAAAGTCCTAGGTTTT 180
Query 181 ATCTCCGGTATCGCCGCCGTTTATCTTCCTCTCCCTCTTGTCCTTCTCGCCGGAGGTTCA 240
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 181 ATCTCCGGTATCGCCGCCGTTTATCTTCCTCTTCCTCTTGTCCTTCTTGCCGGAGGTTCA 240
Query 241 TTAGGGTTCGCCGGCTACGGTCTCCAGTATCTCTCCATCATCAAGAAGATTATCTGTTGG 300
|||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 241 TTAGGGTTTGCCGGCTACGGTCTCCAGTATCTCTCCATCGTCAGGAAGATTATCTGTTGG 300
Query 301 ATCAACACAGCTTGTTACATCGTCGCAATCAATAGTTTTCCGGTGAACCGTCAAGTCGCC 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 ATCAACACAGCTTGTTACATCGTCGCAATCAACAGTTTTCCGGTGAACCGTCAAGTCGCC 360
Query 361 GTGGGGATCACGGCAAGTTATCAAGGTTTGAGTGGGAAAATCTACACCGACATGGTCCAC 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GTGGGGATCACGGCAAGTTATCAAGGTTTGAGTGGAAAAATCTACACCGACATGGTCCAC 420
Query 421 TCtttttttCACACGTCTCAACGTGAAGAAGCTTCGGGTTATCTCTTGCTCAACTCTCTT 480
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 421 ACTTTGTTTCACACGTCTCAACGCGAAGAAGCTTCGGGTTATCTCTTGCTTAACTCTCTA 480
Query 481 GTTCCATTGGTCGCTTGTCTCGTGACGGCTCCTATGTTGATGAGACACGGAGGAGACAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTCCATTGGTCGCTTGTCTCGTGACGGCTCCTATGTTGATGAGACACGGAGGAGACAAA 540
Query 541 ACGATGTCGTATTCTAAG-GATGTTAAAGTTGGTTTTATCGTTTTGTTCGTCTTGACTAT 599
|||| ||||| |||| | ||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 541 ACGACGTCGTTTTCT-GGTGATGTTAAAGTCGGTTTCATCGTTTTGTTCGTCCTGACTAT 599
Query 600 TGCTACGGGGATTTATGCGGTGGCTACGAGTCTTGTCTCGGTTCCTGCGGTTTTAGTACT 659
|| ||||||||||| || |||||||||||||||||||||| ||||||||||||||| ||
Sbjct 600 AGCCACGGGGATTTACGCCGTGGCTACGAGTCTTGTCTCGGCTCCTGCGGTTTTAGTTCT 659
Query 660 TGTAGGCATTGCTCTGTTTCTTCTTGCTCCTCTTGCTATACCAATTGGAGTTGGATTTAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 TGTAGGCATTGCTCTGTTTCTTCTTGCTCCTCTTGCTATACCAATTGGAGTTGGATTGGA 719
Query 720 AGAGCTTATGTCCTCTAGAAAAACTCAACAAAAGGTGCACGATCTTGAAGCTCCTGTCGA 779
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 720 AGAGCTCATGTCCTCTAGAAAAACTCAACAAAAGGTACAAGATCTTGAAGCTCCTCCCGA 779
Query 780 TAAATTTTATTTCGTAGAAGAAGATCACACGAAAGAAGAAGAAGAGTTTGAGAAGGCAAT 839
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 780 TAAATTTTATTTCGAAGAAGAAGATCACACGAAAGAAGAAGAAGAGTTTGAGAAGGAAAT 839
Query 840 AATTGGAGTTAAAGAAGAGGTCGAGTGGACACAACTATGGAAGAAACTCGATTTTTGGAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AATTGGAGTTAAAGAAGAGGTCGAGTGGACACAACTATGGAAGAAACTCGATTTTTGGAT 899
Query 900 ATACTTTGGACTCTATTTGTTCGGTCCAACGGTCGGGCTAGTGTTTACGAACAATCTTGG 959
||| |||||||| ||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 900 ATATTTTGGACTTTATTTGTTCGGTCCAACCGTCGGGCTAGTGTTTATGAATAATCTTGG 959
Query 960 TCAGATCGCTGAGTCTCGTGGCTCCACCGCCACCAGTTCCTTGGTCGCTCTCTCGTCGTC 1019
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 960 TCAGATCGCTGAGTCTCGTGGCTCCACCGCGACCAGTTCCTTGGTCGCTCTCTCGTCGTC 1019
Query 1020 GTTCGGGTTTTTCGGCCGCTTG-TTACCATCATTACTCGACTACTTCTTTTCTAGGAACA 1078
|||||||||||||||||||||| || || || ||||||||||| ||||| ||||||||||
Sbjct 1020 GTTCGGGTTTTTCGGCCGCTTGCTT-CCTTCGTTACTCGACTATTTCTTCTCTAGGAACA 1078
Query 1079 AATACATGCCATCAAGTCCGGTTTCTATGGCGGGTTCACTGGTAGCAATGGTAGCTTCGT 1138
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AATACATGCCATCAAGTCTGGTTTCTATGGCGGGTTCACTGGTAGCAATGGTAGCTTCGT 1138
Query 1139 TTCTCCTCCTCCTTATTGACTCCGACATTGCTCTCTACATCGGCACGGCGATGATTGGCA 1198
||||||||||||| || ||||| || || |||||||||||| ||||||||||||| ||||
Sbjct 1139 TTCTCCTCCTCCTCATCGACTCTGATATCGCTCTCTACATCAGCACGGCGATGATCGGCA 1198
Query 1199 TCTTCTCCGGAGCCTTGACTTCACTCTCTGTCACAATGACGGCAGAGCTTTTTGGGACGA 1258
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1199 TCTTCTCCGGAGCCTTGACTTCACTCTCCGTCACAATGACGGCAGAGCTTTTTGGGACGA 1258
Query 1259 AGCATTTTGGAGTTAACCACAACATTGTTGTCGGAAGTATTCCCCTTGGATCTTTTTCTT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGCATTTTGGAGTTAACCACAACATTGTTGTCGGAAGTATTCCCCTTGGATCTTTTTCTT 1318
Query 1319 TCGGTTTGTTAGCCGCTAAAATTTACCGCGACGGAGCTGCTCTTTACGGAGATGATGGCA 1378
|||||||||||||||||||| |||||||||||||||| || || || ||||| |||||||
Sbjct 1319 TCGGTTTGTTAGCCGCTAAAGTTTACCGCGACGGAGCCGCCCTCTATGGAGACGATGGCA 1378
Query 1379 AGTGTTTTGGGATGCATTGCTTTCAAACCACTTTGGTATTTTGGGGAATGCTTTGTTCGA 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1379 AGTGTTTTGGGATGCATTGCTTTCAAACCACTTTGGTATTTTGGGGAATGCTCTGTTCGA 1438
Query 1439 TCGCCGCACTTCTCGCCGCCGTTTTGTATATACGCAACCGCAAGTTCTATTCGCAGAAGC 1498
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1439 TCGCAGCTCTTCTCGCCGCCGTTTTATATATACGCAACCGCAAGTTCTATTCGCAGAAGC 1498
Query 1499 CGTAG 1503
|||||
Sbjct 1499 CGTAG 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56259291865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5