BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30310.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481942 jgi|Araly1|481942|fgenesh2_kg.4__1002__AT2G30310.1 1659 0.0
Ahg320775 jgi|Araly1|320775|fgenesh1_pm.C_scaffold_4000832 1264 0.0
> Ahg481942 jgi|Araly1|481942|fgenesh2_kg.4__1002__AT2G30310.1
Length=1084
Score = 1659 bits (898), Expect = 0.0
Identities = 1024/1086 (94%), Gaps = 4/1086 (0%)
Strand=Plus/Plus
Query 1 ATGTCTACATCTAAAACCATAGTGTTTGGTCTCTTT-GTCGCAACACTCCTCGTCTCTTG 59
|||| ||||||||||||| ||||||||||||| ||| || |||||||||||||| |||||
Sbjct 1 ATGTATACATCTAAAACCTTAGTGTTTGGTCT-TTTCGTTGCAACACTCCTCGTGTCTTG 59
Query 60 CAATGTGGCTGCAAACGCCACAACGCAGCCGCTTTTCCCAGCGATTCTAATCTTCGGTGA 119
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 60 CAATGCGGCTGCAAACGCCACAATGCAGCCGCTTTTCCCAGCGATTCTAATCTTCGGGGA 119
Query 120 CTCAACCGTAGACACAGGCAACAACAACTACCATTCACAAACCATCTTCAAGGCTAAGCA 179
|||||||| ||||||||||||||| |||||| ||| |||||||||||||||||||| |||
Sbjct 120 CTCAACCGCAGACACAGGCAACAATAACTACGATTTACAAACCATCTTCAAGGCTATGCA 179
Query 180 TCTCCCTTACGGCGTTGATCTACCGGGCCATGAAGCTAACGGAAGATAT-TCAAATGGAA 238
||| |||||||| |||||||| || ||||||||||| | |||||||| | || |||||||
Sbjct 180 TCTTCCTTACGGAGTTGATCTCCCCGGCCATGAAGCGAGCGGAAGAT-TCTCGAATGGAA 238
Query 239 AAGTAATCTCTGACGTCATTGCTTCCAAACTCAACATCAAAGAGTTGGTTCCTCCGTTTC 298
|| |||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 239 AACTAATCTCTGATATCATTGCTTCCAAACTCAACATTAAAGAGTTGGTTCCTCCATTTC 298
Query 299 TACAACCAAACATCTCCCACCAAGACATTGTCACTGGCGTCTCTTTCGCATCCGCGGGTG 358
||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||
Sbjct 299 TACAACCAAACATCTCCGACCAAGACATTGTCACTGGCGTCTGTTTTGCATCCGCGGGTG 358
Query 359 CGGGCTACGATGACCGGAGCTCACTCTCGAGCAAAGCAATCCCGGTCTCACAACAGCCAA 418
|||||||||||||||||| |||||||||||||||||||||||| |||||||| || ||||
Sbjct 359 CGGGCTACGATGACCGGACCTCACTCTCGAGCAAAGCAATCCCAGTCTCACAGCAACCAA 418
Query 419 GCATGTTTAAGAATTATATTGCTCGTCTCAAAGGTATCGTAGGAGACAAGAAAGCAATGG 478
||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 419 GCATGTTCAAGAATTACATTGCTCGTCTGAAAGGTATCGTAGGGGACAAGAAAGCGATGG 478
Query 479 AGATCATTAACAACGCTTTAGTGGTCATAAGCGCAGGGCCTAACGATTTCATCTTGAACT 538
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 479 AGATCATCAACAACGCTTTAGTGGTCATAAGCGCAGGGCCTAACGACTTCATCTTGAACT 538
Query 539 TTTATGATATCCCCACGAGGCGTCTTGAGTATCCTACTATCCATGGTTACCAAGAGTTTA 598
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 539 TTTATGATATCCCCACGAGGCGTCTCGAGTATCCTACTATCTATGGTTACCAAGAGTTTA 598
Query 599 TCCTCAAGAGGCTTGACGGTTTTGTCCGGGAGCTTTATAGTTTAGGTTGCCGAAATATTG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCCTCAAGAGGCTTGACGGTTTTGTCCGGGAGCTTTATAGTTTAGGTTGCCGAAATATTG 658
Query 659 TGGTCGGAGGGTTACCACCAATGGGATGTTTACCAATCCAAATGACCGCGAAAATGAGAA 718
||||||||||| |||| ||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 659 TGGTCGGAGGGCTACCTCCAATGGGATGTTTACCGATCCAAATGACCACAAAAATGAGAA 718
Query 719 ACATTTTGAGATTTTGTGTGGAACAAGAAAACAAAGACTCCGTTTTGTACAATCAGAAAC 778
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 ACATATTGAGATTTTGTGTGGAACAAGAGAACAAAGACTCCGTTTTGTACAATCAGAAAC 778
Query 779 TAGTAAAGAAACTGCCTGAGATCCAAGCGTCTCTACCGGGAAGCAATTTCCTTTACGCCA 838
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 779 TAGTAAAGAAACTGCCTGAGATCCAAGCGTCTCTACCCGGAAGCAAGTTCCTTTACGCCA 838
Query 839 ACGTCTACGACCCATTGATGGACATGATCCAAAACCCTAGTAAATACGGATTCAAGGAGA 898
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACGTCTACGACCCATTAATGGACATGATCCAAAACCCTAGTAAATACGGATTCAAGGAGA 898
Query 899 CTAAGAAAGGATGTTGCGGAACAGGATACTTGGAAACAACATTCATGTGCAATCCCCTTA 958
| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 899 CAAAGAAAGGATGTTGCGGAACAGGATACTTGGAAACGGCCTTCATGTGCAATCCCTTTA 958
Query 959 CAAAGACTTGTCCGAATCACTCCGATCACTTGTTTTGGGACTCAATTCATCCCTCGGAAG 1018
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 959 CAAAGACTTGTCCGAATCACTCGGATCACTTGTTTTGGGACTCAATTCATCCCTCAGAAG 1018
Query 1019 CTGCCTACAATTACATTGGCAACTTTGTGGATGCTCAGATTCGAGGCTGGATTAAGGCTT 1078
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTGCTTACAATTACATTGGCAACTTTGTGGATGCTCAGATTCGAGGCTGGATTAAGGCTT 1078
Query 1079 AAGCCA 1084
||||||
Sbjct 1079 AAGCCA 1084
> Ahg320775 jgi|Araly1|320775|fgenesh1_pm.C_scaffold_4000832
Length=1062
Score = 1264 bits (684), Expect = 0.0
Identities = 960/1089 (88%), Gaps = 36/1089 (3%)
Strand=Plus/Plus
Query 1 ATGTCTACATCTAAAACCATAGTGTTTGGTCTCTTTGTCGCAACACTCCTCGTCTCTTGC 60
|||| || |||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGTGTATATCTAAAACCATAGTGTTTGGTCTCTTTGTTGCAACACTCCTCGTGTCTTGC 60
Query 61 AATGTGGCTGCAAACGCCACAACGCAGCCGCTTTTCCCAGCGATTCTAATCTTCGGTGAC 120
|||| || |||||||| | | ||||||| ||||||||| ||||||||||||||||| |||
Sbjct 61 AATGCGGATGCAAACG-C-C-ACGCAGCGGCTTTTCCCGGCGATTCTAATCTTCGGCGAC 117
Query 121 TCAACCGTAGACACAGGCAACAACAACTACCATTCACAAACCATCTTCAAGGCTAAGCAT 180
||||| |||||||||||||| ||||||||| | |||||| || ||||||||||||| ||
Sbjct 118 TCAACGGTAGACACAGGCAATAACAACTACTACTCACAAGCCGTCTTCAAGGCTAATCAC 177
Query 181 CTCCCTTACGGCGTTGATCTACCGGGCCATGAAGCTAACGGAAGATAT-TCAAATGGAAA 239
|||||||| ||||||||||| || ||||| |||||||| || |||| | ||||| || ||
Sbjct 178 CTCCCTTATGGCGTTGATCTTCCCGGCCACGAAGCTAATGGGAGAT-TCTCAAACGG-AA 235
Query 240 AG-TAATCTCTGACGTCAT-TGCTTCCAAACTCAACATCAAAGAGTTGGTTCCTCCGTTT 297
|| ||||||||||||| || | | |||||||||||||||||||||| ||||||||||||
Sbjct 236 AGCTAATCTCTGACGTAATCT-CCACCAAACTCAACATCAAAGAGTTTGTTCCTCCGTTT 294
Query 298 CTACAACCAAACATCTCCCACCAAGACATTGTCACTGGCGTCTCTTTCGCATCCGCGGGT 357
||||| |||||||||||| ||||||||||||||||||| |||| ||| |||||||| |||
Sbjct 295 CTACAGCCAAACATCTCCGACCAAGACATTGTCACTGGAGTCTGTTTTGCATCCGCCGGT 354
Query 358 GCGGGCTACGATGACCG-GAGCTCACTCTCGAGCAAAGCAATCCCGGTCTCACAACAGCC 416
|| ||||||||||| || || ||| || |||||||| || ||||||||||||||||||||
Sbjct 355 GCTGGCTACGATGA-CGAGACCTCGCTATCGAGCAAGGCTATCCCGGTCTCACAACAGCC 413
Query 417 AAGCATGTTTAAGAATTATATTGCTCGTCTCAAAGGTATCGTAGGAGACAAGAAAGCAAT 476
| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 414 ACGCATGTTCAAGAATTATATTGCTCGTCTCAAACGTATCGTAGGAGACAAGAAAGCAAT 473
Query 477 GGAGATCATTAACAACGCTTTAGTGGTCATAAGCGCAGGGCCTAACGATTTCATCTTGAA 536
| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 474 GAACATAATTAACAACGCTTTAGTGGTCATAAGCGCAGGGCCTAATGATTTCATCTTGAA 533
Query 537 CTTTTATGATATCCCCACGAGGCGTCTTGAGTATCCTACTATCCATGGTTACCAAGAGTT 596
|||||| ||||||||||| |||| ||| ||||||||||||||| ||||||||||||| ||
Sbjct 534 CTTTTACGATATCCCCACAAGGCATCTCGAGTATCCTACTATCTATGGTTACCAAGATTT 593
Query 597 TATCCTCAAGAGGCTTGACGGTTTTGTCCGGGAGCTTTATAGTTTAGGTTGCCGAAATAT 656
| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 594 TGTCCTCAAGAGGCTTGACGGTTTTGTCCGGGAGCTTTATAGTTTTGGTTGCCGGAATAT 653
Query 657 TGTGGTCGGAGGGTTACCACCAATGGGATGTTTACCAATCCAAATGACCGCGAAAATGAG 716
| | ||||||||||| || || |||||||||||||| ||||||||||||| |||||||||
Sbjct 654 TCTAGTCGGAGGGTTGCCGCCGATGGGATGTTTACCGATCCAAATGACCGTGAAAATGAG 713
Query 717 AAACATTTTGAGATTTTGTGTGGAACAAGAAAACAAAGACTCCGTTTTGTACAATCAGAA 776
|| ||||| | | ||| | ||||||| |||||||||||||||||||||||||| ||
Sbjct 714 AAGCATTT-G---T---GTG-G-AACAAGAGAACAAAGACTCCGTTTTGTACAATCAAAA 764
Query 777 ACTAGTAAAGAAACTGCCTGAGATCCAAGCGTCTCTACCGGGAAGCAATTTCCTTTACGC 836
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 765 ACTAGTAAAGAAACTGCCTGAGATCCAAGCGTCTCTACCCGGAAGCAAGTTCCTTTACGC 824
Query 837 CAACGTCTACGACCCAT-TGATGGACATGATCCAAAACCCTAGTAAATACGGATTCAAGG 895
||| |||||||||| | ||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 825 TAACATCTACGACCC-TGTGATGGACATGATCCGAAACCCTAGCAAATACGGATTCAAGG 883
Query 896 AGACTAAGAAAGGATGTTGCGGAACAGGATACTTGGAAACAA-CATTCATGTGCAATCCC 954
|||| |||| ||||||||||||||||| | |||||| | | ||| |||||||| ||
Sbjct 884 AGACGAAGACAGGATGTTGCGGAACAG--T----GGAAACGAGC-TTCTTGTGCAATTCC 936
Query 955 CTTA-CAAAGACTTGTCCGAATCACTCCGATCACTTGTTTTGGGACTCAATTCATCCCTC 1013
||| ||||||||||||||||||| || ||||| |||||||||||||| ||||| |||||
Sbjct 937 -TTATCAAAGACTTGTCCGAATCATTCAGATCATTTGTTTTGGGACTCCATTCACCCCTC 995
Query 1014 GGAAGCTGCCTACAATTACATTGGCAACTTTGTGGATGCTCAGATTC--GAGGCTGGATT 1071
||||| || ||||| ||| | || ||||| | ||||||||||||| ||| ||| ||
Sbjct 996 CGAAGCAGCTTACAAATACCTAGGGAACTTCATAGATGCTCAGATTCATGAG--TGGCTT 1053
Query 1072 AAGGCTTAA 1080
|||||||||
Sbjct 1054 AAGGCTTAA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5