BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30320.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481943 jgi|Araly1|481943|fgenesh2_kg.4__1003__AT2G30320.1 2418 0.0
> Ahg481943 jgi|Araly1|481943|fgenesh2_kg.4__1003__AT2G30320.1
Length=1524
Score = 2418 bits (1309), Expect = 0.0
Identities = 1462/1535 (95%), Gaps = 13/1535 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGTCTCGTTTCTACGAATTCCAATTCCATCGCGGGTCTTCTGGTACCCGACCCGA 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGCAGTCTCGTTTCTACGAATTCCAATTCCTTCACGGGTCTTCTGGTACCCGACCCGA 60
Query 61 CTTATTCGGGTCACACCAGCGTTATTACGATTCTCTTCCTCCGCCGCATTTCAGCCGTCT 120
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 ATTATTCGGGCCACACCAGCGTTAGTACGATTCTCTTCCTCCGCCGCATTTCAGCCGTCG 120
Query 121 TCTACTTCACTCTCACCGCCTTCTTCCGACAACTTTCTCGCCGATAAATGGGAATCATAT 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTACTTCACTCTCACCGTCTTCTTCCGACAACTTTCTCGCCGATAAATGGGAATCATAT 180
Query 181 CGGAAGAAGAAGGTCGTCATTCGAATTGGATACGTGGGTACTGATTACAGAGGCTTACAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 181 CGGAAGAAGAAGGTCGTCATTCGAATTGGATACGTGGGTACTGATTACAGAGGTTTGCAG 240
Query 241 ATTCAAAGAGACGACCCTTCTATCAAAACTATTGAGGGTGAGTTGGAAGTTGCTATATAC 300
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 241 ATTCAAAGAGACGACCCTTCTCTCAAAACTATTGAGGGTGAATTGGAAGTTGCTATATAT 300
Query 301 AAGGCAGGTGGGATTAGAGATAGTAACTATGGTGATCTTCATAAGATTGGTTGGGCTAGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGGCAGGTGGGATTAGAGATAGTAACTATGGTGATCTTCATAAGATTGGTTGGGCTAGA 360
Query 361 AGTAGTCGAACTGATAAAGGAGTTCATTCTTTGGCAACGTCAATATCGCTGAAAATGGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTAGTCGAACTGATAAAGGAGTTCATTCTTTGGCAACGTCAATATCGCTGAAAATGGAG 420
Query 421 ATCCCTGAGACAGCGTGGAAGGATGATCCTCAAGGCACTGTTCTTGCTAAATGCATTAGC 480
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 ATCCCTGAGACGGCGTGGAAGGATGATCCTCAGGGCACTGTTCTTGCTAAATGCATTAGC 480
Query 481 AAACACCTTCCTGAGAATATTAGAGTTTTCAGTGTTTTACCGTCAAATAGGAGATTTGAT 540
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGCACCTTCCCGAGAATATCAGAGTTTTCAGTGTTTTACCGTCAAATAGGAGATTTGAT 540
Query 541 CCTCGAAGAGAGTGTACGCTACGGAAATATTCTTACCTCCTCCCTGTTGATGTTCTTGGG 600
|| ||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 541 CCCCGAAGGGAGTGTACGCTGCGGAAATATTCTTATCTCCTCCCTGTTGATGTTATTGGG 600
Query 601 ATCAAGAATAGCTTTACTTCAGATGAGATTGACTATCACATTACGGATTTCAACGAAATT 660
||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 601 ATCAAGAATAGCTTTACTTCAAATGAGATTGACTATCACATTACGGATTTTAATAAAATT 660
Query 661 TTAAAAGAATTTGAGGGTGAATATCCTTTCCATAACTATACACAGCGGTCACGGTACAGA 720
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTAAATGAATTTGAGGGTGAATATCCTTTCCATAACTATACACAGCGGTCACGGTACAGA 720
Query 721 AGGAAATCGGAACAAAAAATAAAGCAAAGAAACGGACGCCCTCCAAGAGA-ACCAAAATC 779
||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| |
Sbjct 721 AGGAAATCGGAACAAAAAATAAAACAAAGAAACGGACGCCCTCCAAGA-ATACCAAAAGC 779
Query 780 AATCAAAGCATCagaatcagagtttagagaggagaaccacatagaaattggagaagaaga 839
|||||||||||||||||||||||||| |||||||||||||| |||||||| | | |||||
Sbjct 780 AATCAAAGCATCAGAATCAGAGTTTACAGAGGAGAACCACAGAGAAATTG-A-A-GAAGA 836
Query 840 agaagaaaaagaagTGGATGGTGAATCTGATGAACATGTGGTTACTCCTGATTCTGATAA 899
||||||||||||| ||||||| ||||||||||||||| | | ||||||||||||||||
Sbjct 837 AGAAGAAAAAGAAATGGATGGCGAATCTGATGAACATAT--TC-CTCCTGATTCTGATAA 893
Query 900 TTCTCAGGTGTACAGTCGTGCAAAATGGCTGTACGAGCCAGATGAGACAGATAAGATTAG 959
|||||||||| |||| |||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 894 TTCTCAGGTGAACAGCCGTGCAAAATGGCTTTACGAGCCAGATGAGACAGATAAGCTGAG 953
Query 960 CGGTGCTCATTTCAGGAAAGTGTTTCGATGTCGTAGTGGAAAGCTAGAGAATTCACTTGG 1019
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TGGTGCTCATTTCAGAAAAGTGTTTCGATGTCGTAGTGGAAAGCTAGAGAATTCACTTGG 1013
Query 1020 ATTCGGCTTTGTGGAGATCTCCATATGGGGAGAATCATTCATGTTGCATCAGATACGGAA 1079
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ATTCGGCTTTGTCGAGATCTCCATATGGGGAGAATCATTCATGTTGCATCAGATACGGAA 1073
Query 1080 GATGATTGGAACGGCCGTGGCAGTGAAGAGAGAGCTGCTTCCTAGAGACATCATAAGACT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GATGATTGGAACGGCCGTGGCAGTGAAGAGAGAGCTGCTTCCTAGAGACATCATAAGACT 1133
Query 1140 ATCTCTGAACAAGTTCACAAGAATTGTCTTGCCACTGGCTCCATCTGAAGTACTGATCCT 1199
|||||| ||||||||||||||||| || ||||| || ||||||||||||||||| |||||
Sbjct 1134 ATCTCTAAACAAGTTCACAAGAATCGTTTTGCCTCTTGCTCCATCTGAAGTACTAATCCT 1193
Query 1200 GAGAGGAAACAGTTTCGAAGTGCGTAGATTGCCTGAGAGGCCGGGGATGGAAGCAACAGG 1259
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1194 GAGAGGAAACAGTTTCGAAGTGCGTAGATTGCCTGAGAGGCCGGGGACGGAAGCAAC-GG 1252
Query 1260 T-GAATCAGAAGAAGTGGAGAAGGAGATAGAGGAGTTTTACAGAGCAGTGATGGTTCCAC 1318
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1253 TTGAATCAGAAGAAGTTGAGAAGGAAATAGAGGAGTTTTACAGAGCAGTGATGGTTCCAC 1312
Query 1319 AGGTGAGTATATTCCTGGATTCTGAGAAATCTCCATGGAAAGAGTGGGTGGATCATTTGG 1378
||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1313 AGGTGAGTAGATTCTTGGATTCTGAGAAATCTCCATGGAAAGAGTGGGTGGAGCATTTAG 1372
Query 1379 ATAGGAATGATGGTTTGATAGACGAGGAATTGGAAGATGTAAGGAAAGGTTGGGAGGAGT 1438
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1373 ATAGGAATGATGGTTTGATAGACGAGGAACTGGAAGATGTAAGGAAAGGTTGGGAGGAGT 1432
Query 1439 GGAAAGCTGCGAAGCCATGGATGAATTTGAAGAAGACAGAAGATGATGAAGAAGCATTGA 1498
||||||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 1433 GGAAAGCCGCGAAGCCATGGATGAATTTGAAGAAGACAGAAGATGGTGAAGAAG--T-GA 1489
Query 1499 GTTCTGTTTCAGTACCTATTCATCAAGCTCTATGA 1533
|||||||||||||||||||||||||||||||||||
Sbjct 1490 GTTCTGTTTCAGTACCTATTCATCAAGCTCTATGA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5