BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G30330.1

Length=786
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg900811 jgi|Araly1|900811|Al_scaffold_0004_1461                    649    0.0  


> Ahg900811 jgi|Araly1|900811|Al_scaffold_0004_1461
Length=444

 Score =  649 bits (351),  Expect = 0.0
 Identities = 412/442 (93%), Gaps = 2/442 (0%)
 Strand=Plus/Plus

Query  62   ATGTCACTCTCGGCGGCGCGTGGCCGTATGCTACCTTTTTTAGAGAAGGAGAAATCAGAA  121
            ||||||||||||||||||||||| ||| || |||| ||||  |||||||||||| | |||
Sbjct  1    ATGTCACTCTCGGCGGCGCGTGGGCGTGTGTTACCGTTTTCGGAGAAGGAGAAAACGGAA  60

Query  122  GAAGAGTCTGAAAC-TCTGGAATCGAGTCTCTTACAGCTAATCGACGACAATCGTCGATC  180
            |||||||||| ||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct  61   GAAGAGTCTGGAACAT-TGGAATCGAGTCTCTTACAGCTAATCGATGACAATCGTCGATC  119

Query  181  ATCGTTACAGCTCCGGGAAAAAACCGAGAGATCGAGAAAGGAAGCAATCAGGCACGCGGC  240
             |||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct  120  GTCGTTACAGCTCCGGGAAAAGACCGAGAGATCGAGGAAGGAAGCGATCAGACACGCGGC  179

Query  241  GAGAACGGCGGATCTGCTAGTGAAGGCGGTGAACGGAGGAGTAGAGGAATGTTTCGTTAA  300
            |||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||
Sbjct  180  GAGAACGGCGGATCTGCTAGTGAAGGCGGTGAACGGAGGAGTGGAAGAGTGTTTCGTGAA  239

Query  301  CGAGAAACGGATTGAGTCGGAGATTAGGAATCTTGCCATTACGGTGGCGAAATTCGGCAA  360
            ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct  240  CGAGAAACGGATTGAGTCGGAGATTAGGAATCTTGCGGTTACGGTGGCGAAATTCGGCAA  299

Query  361  ACAAACGGATCAGTGGCTTGCCGTCACTCACGCCGTTAATAGCGCCGTAAAGGAAATTGG  420
            |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  300  ACAAACGGATCAATGGCTTGCCGTCACTCACGCCGTTAATAGCGCCGTTAAGGAGATTGG  359

Query  421  AGATTTTGAGAATTGGATGAAGACGATGGAGTTTGATTGTAAGAAAATCACTGCTGCAAT  480
            ||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct  360  AGATTTTGAGAATTGGATGAAAACTATGGAGTTTGATTGTAAGAAAATCACTGCGGCAAT  419

Query  481  TCGAAACATTCATGAAGATCAA  502
            ||| ||||||||||||||||||
Sbjct  420  TCGCAACATTCATGAAGATCAA  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29011539837


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5