BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30340.1
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481945 jgi|Araly1|481945|fgenesh2_kg.4__1005__AT2G30340.1 1389 0.0
> Ahg481945 jgi|Araly1|481945|fgenesh2_kg.4__1005__AT2G30340.1
Length=930
Score = 1389 bits (752), Expect = 0.0
Identities = 874/932 (94%), Gaps = 11/932 (1%)
Strand=Plus/Plus
Query 11 CTCTAAAATAAACTTATAAATAGCATGCGTGAATGTCCCGAGAAAGGGAAGGATTTGGAG 70
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCAAAAACAAACTTATAAATAGCATGCGTGAATGTCCCGAGAAAGGGAAGGATTTGGAG 60
Query 71 AGTACTACGAGACCGTCAAGAAGATAAAGAAAGATCCAGCCTTCGAGA-CAACGACGGAT 129
|||||||||||| ||| ||||||||||||||||||||| ||||||| | | |||||||||
Sbjct 61 AGTACTACGAGATCGTTAAGAAGATAAAGAAAGATCCAACCTTCGA-ATCGACGACGGAT 119
Query 130 CATGCCGTGATGGGAATCAGGAGACATGTGGCGGTGCCTCCGGGGACAACGTTGAACACC 189
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CATGCCGTGATGGGTATCAGGAGACATGTGGCGGTGCCTCCGGGGACAACGTTGAACACC 179
Query 190 GTAACACCATGCGCCGCTTGTAAGCTCCTCCGCCGTCGTTGTGCGGAGGAGTGTCCTTTC 249
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTGACTCCATGCGCCGCTTGTAAGCTCCTCCGCCGTCGTTGTGCGGAGGAGTGTCCTTTC 239
Query 250 TCGCCTTACTTCTCGCCGCATGAACCTCACAAGTTCGCTGCCGTTCATAAAGTCTTTGGT 309
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 240 TCGCCTTACTTCTCGCCGCACGAACCTCACAAGTTCGCCGCCGTTCATAAAGTCTTCGGT 299
Query 310 GCAAGCAACGTCTCCAAGATGCTTCTGGAAGTGGGAGAGAGCCAAAGAGGAGACGCAGCA 369
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCAAGTAACGTCTCCAAGATGCTTCTGGAAGTGGGAGAGAGCCAAAGAGGAGACGCAGCA 359
Query 370 AATAGTTTAGTATACGAAGCAAACCTAAGACTTAGAGATCCAATCTACGGTTGCATGGGA 429
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 AACAGTTTAGTATACGAAGCAAACCTCAGACTTAGAGATCCAATCTACGGTTGCATGGGA 419
Query 430 GCAATCTCAGCTCTTCAACACCACATTCAGTCTCTTCAATCCGAACTCAC-GACCGTCCG 488
||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct 420 GCAATCTCAGCTCTTCAACACCACATTCAGTCTCTCCAATCCGAACTCACCG-CCGTCCG 478
Query 489 TACGGAAATCCTACGCCACAAATACCAAGAAGCCACCACCATCACTTCTCTCCAAAACAA 548
||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 479 TACAGATATCCTCCGCCACAAATACCGAGAAGCCACCACCATCACTTCTCTCCAAAACAA 538
Query 549 C------TTCAACAGCACTACAACAACTTCATCAGTGAGTTGTGATCAGCATGCTCTCGC 602
| ||| ||| ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 539 CAACAACTTCCACAACACTACAACAACTTCATCAGTGAGTTGTGATCATCATGATCTCGG 598
Query 603 CTCGGCGATTCTCCTCccaccaccaccgccaccacctcctactccacgaccaccaAGGTT 662
| |||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 599 GGCAGCGATTCTTCTCCCACCACCACCGCCACCGCCTCCTCCTCCACGACCACCGAGGTT 658
Query 663 GTTGTCCTCTCAGCCAGCTCCACCGCCTACGCCACCCGTTTCTTTGCCATCTCCGTCCAT 722
|||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct 659 GTTGTCCTCTCAGCCAGCTCCACCGCCTACGCCACCAGCTTCTTTGCCGTCTCCGTCCAT 718
Query 723 GGTTGTGTCGTCCTCTTCATCTTCTAATTCATCTGCCACCAATTCTATGTATAATCCTCC 782
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 719 GGTTGTGTCGTCCTCTTCGTCTTCTAATTCATCAGCTACCAATTCTATGTATAATCCTCC 778
Query 783 TCCATCTTCGACGGCTGGATATAGCAATTCTCTGTCCAGTGATAATAATGTTCATTACTT 842
||| |||||| | |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 779 TCCGTCTTCGGCTGCTGGATACAGTAATTCTCTGTCCAGTGATAATAATGTTCATTACTT 838
Query 843 TGATTAAATCAGAATTCTGTGTTCCTTAAtttttttAAAA-TACTATTATAGCCCTTATT 901
|||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||
Sbjct 839 TGATTAAATCAGAATTATGTGTTTCTTAATTTTTTTAAAAATGCTATTATAGCCCTTATC 898
Query 902 ATAAGCTACGAGATTGAATGGTGATCCATGTT 933
||||||||||||||||||||||||||||||||
Sbjct 899 ATAAGCTACGAGATTGAATGGTGATCCATGTT 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34729977387
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5