BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30340.1 Length=936 Score E Sequences producing significant alignments: (Bits) Value Ahg481945 jgi|Araly1|481945|fgenesh2_kg.4__1005__AT2G30340.1 1389 0.0 > Ahg481945 jgi|Araly1|481945|fgenesh2_kg.4__1005__AT2G30340.1 Length=930 Score = 1389 bits (752), Expect = 0.0 Identities = 874/932 (94%), Gaps = 11/932 (1%) Strand=Plus/Plus Query 11 CTCTAAAATAAACTTATAAATAGCATGCGTGAATGTCCCGAGAAAGGGAAGGATTTGGAG 70 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCAAAAACAAACTTATAAATAGCATGCGTGAATGTCCCGAGAAAGGGAAGGATTTGGAG 60 Query 71 AGTACTACGAGACCGTCAAGAAGATAAAGAAAGATCCAGCCTTCGAGA-CAACGACGGAT 129 |||||||||||| ||| ||||||||||||||||||||| ||||||| | | ||||||||| Sbjct 61 AGTACTACGAGATCGTTAAGAAGATAAAGAAAGATCCAACCTTCGA-ATCGACGACGGAT 119 Query 130 CATGCCGTGATGGGAATCAGGAGACATGTGGCGGTGCCTCCGGGGACAACGTTGAACACC 189 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CATGCCGTGATGGGTATCAGGAGACATGTGGCGGTGCCTCCGGGGACAACGTTGAACACC 179 Query 190 GTAACACCATGCGCCGCTTGTAAGCTCCTCCGCCGTCGTTGTGCGGAGGAGTGTCCTTTC 249 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GTGACTCCATGCGCCGCTTGTAAGCTCCTCCGCCGTCGTTGTGCGGAGGAGTGTCCTTTC 239 Query 250 TCGCCTTACTTCTCGCCGCATGAACCTCACAAGTTCGCTGCCGTTCATAAAGTCTTTGGT 309 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 240 TCGCCTTACTTCTCGCCGCACGAACCTCACAAGTTCGCCGCCGTTCATAAAGTCTTCGGT 299 Query 310 GCAAGCAACGTCTCCAAGATGCTTCTGGAAGTGGGAGAGAGCCAAAGAGGAGACGCAGCA 369 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GCAAGTAACGTCTCCAAGATGCTTCTGGAAGTGGGAGAGAGCCAAAGAGGAGACGCAGCA 359 Query 370 AATAGTTTAGTATACGAAGCAAACCTAAGACTTAGAGATCCAATCTACGGTTGCATGGGA 429 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 360 AACAGTTTAGTATACGAAGCAAACCTCAGACTTAGAGATCCAATCTACGGTTGCATGGGA 419 Query 430 GCAATCTCAGCTCTTCAACACCACATTCAGTCTCTTCAATCCGAACTCAC-GACCGTCCG 488 ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| Sbjct 420 GCAATCTCAGCTCTTCAACACCACATTCAGTCTCTCCAATCCGAACTCACCG-CCGTCCG 478 Query 489 TACGGAAATCCTACGCCACAAATACCAAGAAGCCACCACCATCACTTCTCTCCAAAACAA 548 ||| || ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 479 TACAGATATCCTCCGCCACAAATACCGAGAAGCCACCACCATCACTTCTCTCCAAAACAA 538 Query 549 C------TTCAACAGCACTACAACAACTTCATCAGTGAGTTGTGATCAGCATGCTCTCGC 602 | ||| ||| ||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 539 CAACAACTTCCACAACACTACAACAACTTCATCAGTGAGTTGTGATCATCATGATCTCGG 598 Query 603 CTCGGCGATTCTCCTCccaccaccaccgccaccacctcctactccacgaccaccaAGGTT 662 | |||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||| Sbjct 599 GGCAGCGATTCTTCTCCCACCACCACCGCCACCGCCTCCTCCTCCACGACCACCGAGGTT 658 Query 663 GTTGTCCTCTCAGCCAGCTCCACCGCCTACGCCACCCGTTTCTTTGCCATCTCCGTCCAT 722 |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| Sbjct 659 GTTGTCCTCTCAGCCAGCTCCACCGCCTACGCCACCAGCTTCTTTGCCGTCTCCGTCCAT 718 Query 723 GGTTGTGTCGTCCTCTTCATCTTCTAATTCATCTGCCACCAATTCTATGTATAATCCTCC 782 |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| Sbjct 719 GGTTGTGTCGTCCTCTTCGTCTTCTAATTCATCAGCTACCAATTCTATGTATAATCCTCC 778 Query 783 TCCATCTTCGACGGCTGGATATAGCAATTCTCTGTCCAGTGATAATAATGTTCATTACTT 842 ||| |||||| | |||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 779 TCCGTCTTCGGCTGCTGGATACAGTAATTCTCTGTCCAGTGATAATAATGTTCATTACTT 838 Query 843 TGATTAAATCAGAATTCTGTGTTCCTTAAtttttttAAAA-TACTATTATAGCCCTTATT 901 |||||||||||||||| |||||| |||||||||||||||| | |||||||||||||||| Sbjct 839 TGATTAAATCAGAATTATGTGTTTCTTAATTTTTTTAAAAATGCTATTATAGCCCTTATC 898 Query 902 ATAAGCTACGAGATTGAATGGTGATCCATGTT 933 |||||||||||||||||||||||||||||||| Sbjct 899 ATAAGCTACGAGATTGAATGGTGATCCATGTT 930 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34729977387 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5