BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30350.2
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344798 jgi|Araly1|344798|fgenesh1_pg.C_scaffold_4001140 944 0.0
> Ahg344798 jgi|Araly1|344798|fgenesh1_pg.C_scaffold_4001140
Length=1152
Score = 944 bits (511), Expect = 0.0
Identities = 628/682 (92%), Gaps = 17/682 (2%)
Strand=Plus/Plus
Query 32 ATGAGAGAGAAAAGGGGAAATCGGAAAGCCCTAGATCCCGTCGGTGAGGATGGAGTCACC 91
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAGAGAAAAGGGGAAATCGGAAAACCCTAGATCCCGTCGGTGAGGATGGAGTCACC 60
Query 92 GGAAAAGATGGAAAAGGCTTCTTCGCCTGTTATCTCTTGACCTCTCTTAGCCCTCGTCAT 151
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GGAAAAGAGGGAAAAGGCTTCTTCGCTTGTTATCTCTTGACCTCTCTTAGCCCTCGTCAT 120
Query 152 AAGGGTCAAACCTATATCGGGTTCACTGTAAACCCGAGGCGGAGAATAAGGCAGCACAAT 211
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AAGGGTCAAACCTATATCGGGTTCACGGTAAACCCGAGGCGGAGAATAAGGCAGCACAAT 180
Query 212 GGAGAGATCACTAGTGGTGCTTGGAGAACAAAGAAGAAACGTCCATGGGAAATGGTTCTC 271
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GGAGAGATCACTAGTGGTGCTTGGAGAACAAAGAACAAACGTCCATGGGAAATGGTTCTC 240
Query 272 TGTATCTATGGTTTCCCCACCAATG--TCT---C-T--G-----CCC-TT-CAGTTTGAA 316
||||||||||||||||||||||||| ||| | | | ||| || |||||||||
Sbjct 241 TGTATCTATGGTTTCCCCACCAATGTCTCTGCCCTTCAGAAACCCCCGTTGCAGTTTGAA 300
Query 317 TGGGCTTGGCAGCATCCGAGAGAATCGGTTGCAGTTAGAGAAGCTGCTGCGGCTTTCAAA 376
|||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||
Sbjct 301 TGGGCTTGGCAGCATCCGAGGGAATCGGTGGCAGTGAGAGAAGCTGCTGCTGCTTTCAAA 360
Query 377 TCCTTCTCTGGGGTTGCTA-GTAAGATCAAGCTTGTATATACAATGTTAAATCTTCCAGC 435
||||| |||||| |||| | | ||||||||||||||||| ||||||||||||||||||||
Sbjct 361 TCCTTTTCTGGGATTGC-AGGCAAGATCAAGCTTGTATACACAATGTTAAATCTTCCAGC 419
Query 436 TTGGAATAGTTTGAACCTCACGGTTAATTATTTCTCGTCAAAGTATGCACACCACGGTGG 495
|||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 420 TTGGAATAGTTTAAACCTCACAGTCAATTATTTTTCGTCAAAGTATGCACACCACGGTGG 479
Query 496 TAAATCTCCAAGTTTACCTTTACATATGAAAGTTCAAGTTTGTGCTATGGAGGATCTTCA 555
| ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 480 TCAATCTCCAAGTTTACCTCTACATATGAAAGTCCAAGTTTGTGCTATGGATGATCTTCA 539
Query 556 GTATTTCACAAAGGTAGATGACAGTTCTCAACCCGAAGATGAAGAGAGTCCCGAGGTTAA 615
||||||||||||| |||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 540 GTATTTCACAAAGCTAGACAATGGTTCTCAACCCGAAGATGAAGAGAGTCCCGAGGGTAA 599
Query 616 TGAAGAGgatgatgatgatgatgatgatgatAGTAGCAACCTAAGCCAGCCTGGGAATTC 675
||||||| |||| || || || ||||| ||||||||||||| ||||||||||||||||||
Sbjct 600 TGAAGAGAATGAAGAGGAGGAGGATGAGGATAGTAGCAACCAAAGCCAGCCTGGGAATTC 659
Query 676 AAATACAAGCTCATCGGATGAC 697
|||||| ||||| ||||||||
Sbjct 660 AAATACGTGCTCAACGGATGAC 681
Score = 673 bits (364), Expect = 0.0
Identities = 415/439 (95%), Gaps = 5/439 (1%)
Strand=Plus/Plus
Query 696 ACCGGCATTTTGAAAAAGCGAAAGAACCTGTAACTGTATTTGATGAAGAAGACAGATTAG 755
|||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 710 ACCGGCATTTTGAAAATGCGAAAGAACCCGAAACTGTATTTGATGAAGAAGACAGATTAG 769
Query 756 CAAATTTCAGTGGTTTTGGCTTATTAGATGAAGAAGAGACTGTTGAAGATGAAGTATCAC 815
||||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 770 CAAATTTCACTGGTTTTGGTTTATT--A-GAAGAAGAGACTGTTGAAGATGAAGTATCAC 826
Query 816 ATATCACTGTTGGATCCATTAG-AGCTACTGAGAAAGAACCCGAGACTGTATTCAATGAC 874
|||||||||| ||||||||| | |||||| |||||||||||||||||||||||||| |||
Sbjct 827 ATATCACTGTAGGATCCATT-GAAGCTACGGAGAAAGAACCCGAGACTGTATTCAACGAC 885
Query 875 AGATTAGCAAGTTTCACTTGTTTTGGCTTAGTAGAGATTGTTGAAGATGAAGTATCACAT 934
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 886 AGATTAGCAAGTTTCACTGGTTTTGGCTTGGTAGAGATTGTTGAAGATGAAGTATCACAT 945
Query 935 GGAACTATAGGATCCACTGAAGCTATGGAGAAAGAGTGTAGGAAAAGAAGGAACCATATC 994
||||| |||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||
Sbjct 946 GGAACGGTAGGATCCACTGAAGCTATGGAGAAAGATTGTAGGAGAAGAATGAACCTTATC 1005
Query 995 ACCTCAACGACGACTGAGGTTGATGTAGAGGTGATAGATCTGATGACTCCATCACCAAGC 1054
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1006 ACCTCAACGACGACTGAGGTTGATGTTGAGGTGATAGATCTGATGACTCCATCACCAAGC 1065
Query 1055 TGCAGAGCTGGATCATCTATGAAGAGACGAAGAGTTTCTGAGTTTATAGATTTGACTATG 1114
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TGCAGAGATGGGTCATCTATGAAGAGACGAAGAGTTTCTGAGTTTATAGATTTGACTATG 1125
Query 1115 TCTCCTAATTTCATAGAGT 1133
|||||||||||||||||||
Sbjct 1126 TCTCCTAATTTCATAGAGT 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45747500400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5