BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30360.1
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481948 jgi|Araly1|481948|fgenesh2_kg.4__1008__AT2G30360.1 2176 0.0
> Ahg481948 jgi|Araly1|481948|fgenesh2_kg.4__1008__AT2G30360.1
Length=1758
Score = 2176 bits (1178), Expect = 0.0
Identities = 1462/1594 (92%), Gaps = 39/1594 (2%)
Strand=Plus/Plus
Query 9 ATTATTCTATCGAACTTATC-TTTTT---AAAAGCTTCCGCGTTACGCCATCACTTCTCC 64
|||||||||| ||||||||| ||||| ||||||||||||||||| || | | ||||||
Sbjct 1 ATTATTCTATTGAACTTATCTTTTTTAAAAAAAGCTTCCGCGTTACACCTTAAATTCTCC 60
Query 65 ACCATTTAAATACCTAAACCACTTTCTTTCAAATTTCTTATTCCATAAAAAGTAAATTCA 124
||||||||||||||| |||||| ||| | ||| |||||||||||||||||| ||| ||
Sbjct 61 ACCATTTAAATACCT-AACCAC-TTC--T-AAAATTCTTATTCCATAAAAAGCAAACACA 115
Query 125 --CAACAAAACCaaaaaaaaa-aaaaGAGAAGAAGAATTAGCTTACGTGTTCATCACATC 181
|||||||| ||||||||| | || |||||||||||| |||||||||||| |||||||
Sbjct 116 CCCAACAAAA--AAAAAAAAAGACAA-AGAAGAAGAATTCGCTTACGTGTTCTTCACATC 172
Query 182 TGCATTACGCGCAAACGAAA-CAGATTCAAATTCTCCGGCGAAGTTTTCTTATTCATCAA 240
|| ||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||
Sbjct 173 TGAATTACGCGCAAACGAAATCAGATTCAAATTCTCCGGCGAAGTCTTCCAATTCATCAA 232
Query 241 TCAATCTCTGG-ATTCATCAATCATGCCAGAGATCGAGATT-GCCGCCGGCAGCGGCGAC 298
||||||||||| || | ||||||||||||||||||||||| || || || ||||||||
Sbjct 233 TCAATCTCTGGCCTT-AACAATCATGCCAGAGATCGAGATTATCC-CCTGCGGCGGCGAC 290
Query 299 AACAACGACGCCTTATTCGGTAAATATGAGCTCGGAAAGCTTCTCGGATGCGGCGCATTC 358
||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 291 AACAACGCCGCCTTATTCGGCAAATACGAGCTCGGAAAGCTTCTCGGGTGCGGCGCATTC 350
Query 359 GCCAAAGTCTTCCACGCACGTGATCGTCGTACCGGCCAAAGCGTCGCCGTGAAAATCCTC 418
|| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 351 GCTAAAGTCTTCCACGCACGTGATCGTCGTAACGGTCAAAGCGTCGCCGTGAAAATCCTC 410
Query 419 AACAAGAAAAAACTCCTCACAAATCCAGCTCTAGCCAACAACATCAAACGCGAGATCTCA 478
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 411 AACAAGAAGAAACTCCTAACAAATCCAGCTCTCGCCAACAACATCAAACGCGAGATCTCA 470
Query 479 ATCATGAGAAGATTATCTCATCCAAACATCGTCAAG-CTCCACGAAGTAATGGCGACAAA 537
||||||||| ||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 471 ATCATGAGACGATTATCACATCCAAACATCGT-TAGACTCCACGAAGTAATGGCGACAAA 529
Query 538 ATCAAAGATCTTCTTCGCAATGGAGTTTGTTAAAGGAGGAGAACTATTCAACAAAATCTC 597
| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 530 GGCGAAGATCTTCTTCGCGATGGAGTTTGTTAAAGGAGGTGAGTTATTCAACAAAATCTC 589
Query 598 AAAACATGGACGTCTTAGCGAAGATTTAAGCCGGAGATATTTCCAGCAACTGATCTCCGC 657
|||||||||||||||||||||||| | ||||| ||||| ||||| ||| | ||||||||
Sbjct 590 AAAACATGGACGTCTTAGCGAAGAACTCAGCCGTAGATACTTCCAACAATTAATCTCCGC 649
Query 658 CGTTGGTTATTGCCACGCTCGCGGTGTTTACCACCGCGATCTCAAACCAGAGAATCTATT 717
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 650 TGTTGGTTATTGTCACGCTCGCGGTGTTTACCACCGCGATCTCAAACCGGAGAATCTGTT 709
Query 718 AATAGACGAAAACGGAAACTTAAAAGTTTCCGATTTCGGTCTAAGCGCGTTAACGGATCA 777
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 710 AATAGACGAAAACGGAAACTTAAAAGTTTCCGATTTCGGTCTTAGCGCGTTAACGGATCA 769
Query 778 GATCCGACCCGATGGGTTGTTACATACCTTGTGTGGTACTCCGGCGTACGTTGCGCCGGA 837
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GATCCGACCCGACGGGTTATTACATACCTTGTGTGGTACTCCGGCGTACGTTGCGCCGGA 829
Query 838 GATTCTATCTAAAAAAGGATATGAAGGTGCTAAAGTTGATGTATGGTCTTGTGGAATCGT 897
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 830 GATTCTATCTAAAAAGGGATATGAAGGTGCTAAAGTTGATGTATGGTCTTGCGGAATCGT 889
Query 898 CTTGTTCGTTCTCGTCGCCGGTTATTTACCGTTTAACGATCCGAATGTGATGAATATGTA 957
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 890 CTTGTTCGTTCTCGCCGCCGGTTATTTACCGTTTAACGATCCGAATCTGATGAATATGTA 949
Query 958 TAAGAAGATTTATAAAGGAGAGTATCGTTTTCCTCGTTGGATGTCTCCAGATCTGAAACG 1017
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 950 TAAGAAGATTTATAAAGGAGAGTATCGTTTTCCTCGTTGGATGTCTCAAGATCTGAAACG 1009
Query 1018 ATTCGTTTCTCGTCTTTTAGATATTAATCCTGAGACTAGAATCACCATTGATGAGATTTT 1077
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TTTCATTTCTCGTCTTCTAGATATTAATCCTGAGACTAGAATCACCATTGATGAGATTTT 1069
Query 1078 GAAAGATCCTTGGTTTGTTAGAGGAGGTTTTAAACAGATCAAGTTCCACGATGACGAGAT 1137
|||||||||||||||||||| ||||||| |||| || ||||||||||| |||||||||
Sbjct 1070 GAAAGATCCTTGGTTTGTTAAAGGAGGTCTTAAGCAAATCAAGTTCCA---TGACGAGAT 1126
Query 1138 CGAAGATC---AGAAAG-TG-GAATCGTC-ACTAGAAGCTGTGAAGAGTTTAAACGCGTT 1191
|| ||| |||||| | ||| || | |||| ||||||||||||||||||||||
Sbjct 1127 TGATGATTGTGAGAAAGATCAGAAA-GTGGA--AGAATCTGTGAAGAGTTTAAACGCGTT 1183
Query 1192 TGATTTGATTTCTTACTCGTCGGGATTGGATTTGTCGGGATTGTTTGCTGGTTGTAGTAA 1251
||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 1184 TGATTTGATTTCTTACTCGTCGGGATTAGATTTGTCGGGATTGTTTGATGGCTGTAGTAA 1243
Query 1252 TTCGAGT-GGTGAATCGGAGAGGTTTTTATCGGAAAAGTCGCCGGAGATGTTGGCggagg 1310
|||| || || || || ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1244 TTCG-GTTGGGGAGTCAGAGAGGTTTTTATCGGAGAAGTCGCCGGAGAAATTGGCGGAGG 1302
Query 1311 aagtggaggggtttgcgagagaggagaatctgaggatgaagaagaagaaggaggaagagT 1370
|||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1303 AAGTGGAGAGGTTTGCGAGAGAGGAGAATTTGAGGATGAAGAAGAAGAAGGAAGAAGAGT 1362
Query 1371 ATGGGTTTGAGATGGAGGGGCAAAATGGGAAATTTGGTATCGGGATTTGTATTTCGCGGT 1430
|||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1363 ATGGGTTTGAAATGGAAGGGCAAAATGGGAAATTTGTTATCGGGATTTGTATTTCGCGGT 1422
Query 1431 TGAATGATTTGCTTGTGGTGGTGGAGGCACGGCGGAGAGGTGGTGATGGTGATTGTTATA 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 TGAATGATTTGCTTGTGGTGGTGGAGGCACGGCGGAGAGGTGGTGATGGTGATTGTTATA 1482
Query 1491 AGGAGATGTGGAATGGTAAACTCAGGGTTCAACTTATTCGCGTTTGCGATCAGACGTCGT 1550
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 AGGAGATGTGGAATGATAAACTCAGGGTTCAACTTATTCGCGTTTGCGATCAGACGTCGT 1542
Query 1551 CAACAAACGCGGCTATTTAAAAGAACGCTATGAA 1584
||| | ||| | |||||||||||||||||||||
Sbjct 1543 CAA-A--CGCAGTTATTTAAAAGAACGCTATGAA 1573
Score = 226 bits (122), Expect = 5e-58
Identities = 146/157 (93%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 1695 AATGTATGTATTTAAATACTGTACCAAATTGTAGGTATCTATTTTGTGCTTTTTGAT-CA 1753
||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct 1605 AATATATGTATTTAAATACAGTACCAAATTGTAGGCATCTATTTTGTGCTTTTTGATAAA 1664
Query 1754 ATGTGTTACTATGTACAACAACAAGTCTAAAATTGCATTTGTAGATACTTCACTCTTTTG 1813
|||| | ||||||||| || |||||| ||||||||||||||||||||||| |||||||||
Sbjct 1665 ATGTATAACTATGTAC-AC-ACAAGTATAAAATTGCATTTGTAGATACTT-ACTCTTTTG 1721
Query 1814 TATAATGTAGAAAATGTTCTTCTATTTATAGTTTGGA 1850
|||||||||||||||||||||||||||||||||||||
Sbjct 1722 TATAATGTAGAAAATGTTCTTCTATTTATAGTTTGGA 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5