BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G30370.1

Length=1057
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481949 jgi|Araly1|481949|fgenesh2_kg.4__1009__AT2G30370.1         529    2e-149


> Ahg481949 jgi|Araly1|481949|fgenesh2_kg.4__1009__AT2G30370.1
Length=714

 Score =  529 bits (286),  Expect = 2e-149
 Identities = 389/434 (90%), Gaps = 26/434 (6%)
 Strand=Plus/Plus

Query  243  ATGGGTTTCGAGAGAAcatcatcatcatt-atcattattatcatcatcattaccatcatc  301
            ||||||||||||||| |||||||||| || ||||||||| ||||||||||||||||||||
Sbjct  1    ATGGGTTTCGAGAGACCATCATCATC-TTCATCATTATTGTCATCATCATTACCATCATC  59

Query  302  atta-caaccatcaGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATTTATTGCTACTCT  360
            |||| ||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct  60   ATTACCAA-CATCAGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATATATTACTACTCT  118

Query  361  TCTTCGTCCTCTGTGTCATTGCCACCTTCACTA-TAACTCCCACTTCGACTT-CTTCTCC  418
            |||||||||||||||| ||| ||||||||| || |||||||||||||| ||| |||||||
Sbjct  119  TCTTCGTCCTCTGTGTGATTACCACCTTCA-TAATAACTCCCACTTCG-CTTTCTTCTCC  176

Query  419  ATATAATAGGAATTCTAACTCTGGGACACTAGGGAACTTCTATGCAAAGGTTCGTAAACT  478
            ||||| |||||||||||||||||||| |||||||||||||||| || |||||||||| ||
Sbjct  177  ATATATTAGGAATTCTAACTCTGGGAAACTAGGGAACTTCTATCCACAGGTTCGTAAGCT  236

Query  479  GTTTATACCTCTTACTCTCTTGCGTGATCTAACAATCAGCGACTGTGACGGCATGTCGAG  538
             ||| || |||||||| | ||   ||  |   |     |  |||||||||||||||||||
Sbjct  237  -TTT-TAGCTCTTACTTT-TT---TG--C---C-----G--ACTGTGACGGCATGTCGAG  278

Query  539  ACTGACTGGGCATGCAGAGATGCCATGTACTCCTAAAGAAATTCTCAGCCGTCGGATTGG  598
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  279  ACTGACTGGTCATGCAGAGATGCCATGTACTCCTAAAGAAATTCTCAGCCGTCGGATTCG  338

Query  599  TTTCAGCGCACACGAGGACAAGGACAGTACTCAACTTTTGGTTCGTTCACCACTCGTGGG  658
            ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct  339  TTTAAGCGCACACGAGGACAAGGACAGTACTCAACTTTTGGTCCGTTCACCTCTCGTGGG  398

Query  659  ACCCTGCCTTGCTT  672
            ||||||| ||||||
Sbjct  399  ACCCTGCATTGCTT  412



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39342850344


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5