BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30370.1 Length=1057 Score E Sequences producing significant alignments: (Bits) Value Ahg481949 jgi|Araly1|481949|fgenesh2_kg.4__1009__AT2G30370.1 529 2e-149 > Ahg481949 jgi|Araly1|481949|fgenesh2_kg.4__1009__AT2G30370.1 Length=714 Score = 529 bits (286), Expect = 2e-149 Identities = 389/434 (90%), Gaps = 26/434 (6%) Strand=Plus/Plus Query 243 ATGGGTTTCGAGAGAAcatcatcatcatt-atcattattatcatcatcattaccatcatc 301 ||||||||||||||| |||||||||| || ||||||||| |||||||||||||||||||| Sbjct 1 ATGGGTTTCGAGAGACCATCATCATC-TTCATCATTATTGTCATCATCATTACCATCATC 59 Query 302 atta-caaccatcaGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATTTATTGCTACTCT 360 |||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 60 ATTACCAA-CATCAGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATATATTACTACTCT 118 Query 361 TCTTCGTCCTCTGTGTCATTGCCACCTTCACTA-TAACTCCCACTTCGACTT-CTTCTCC 418 |||||||||||||||| ||| ||||||||| || |||||||||||||| ||| ||||||| Sbjct 119 TCTTCGTCCTCTGTGTGATTACCACCTTCA-TAATAACTCCCACTTCG-CTTTCTTCTCC 176 Query 419 ATATAATAGGAATTCTAACTCTGGGACACTAGGGAACTTCTATGCAAAGGTTCGTAAACT 478 ||||| |||||||||||||||||||| |||||||||||||||| || |||||||||| || Sbjct 177 ATATATTAGGAATTCTAACTCTGGGAAACTAGGGAACTTCTATCCACAGGTTCGTAAGCT 236 Query 479 GTTTATACCTCTTACTCTCTTGCGTGATCTAACAATCAGCGACTGTGACGGCATGTCGAG 538 ||| || |||||||| | || || | | | ||||||||||||||||||| Sbjct 237 -TTT-TAGCTCTTACTTT-TT---TG--C---C-----G--ACTGTGACGGCATGTCGAG 278 Query 539 ACTGACTGGGCATGCAGAGATGCCATGTACTCCTAAAGAAATTCTCAGCCGTCGGATTGG 598 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 279 ACTGACTGGTCATGCAGAGATGCCATGTACTCCTAAAGAAATTCTCAGCCGTCGGATTCG 338 Query 599 TTTCAGCGCACACGAGGACAAGGACAGTACTCAACTTTTGGTTCGTTCACCACTCGTGGG 658 ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 339 TTTAAGCGCACACGAGGACAAGGACAGTACTCAACTTTTGGTCCGTTCACCTCTCGTGGG 398 Query 659 ACCCTGCCTTGCTT 672 ||||||| |||||| Sbjct 399 ACCCTGCATTGCTT 412 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39342850344 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5