BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30380.1
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933537 jgi|Araly1|933537|scaffold_401525.1 1319 0.0
> Ahg933537 jgi|Araly1|933537|scaffold_401525.1
Length=1307
Score = 1319 bits (714), Expect = 0.0
Identities = 900/986 (91%), Gaps = 27/986 (3%)
Strand=Plus/Plus
Query 1 ATGGACAATGCCGTTGTTAAAAGATCAAGTCCATCTTCGAATATATCAGAAGTTATCTCC 60
||||| |||||||||| ||||| ||| |||||||||||||||||||||||| | ||||||
Sbjct 24 ATGGAGAATGCCGTTGCTAAAACATCGAGTCCATCTTCGAATATATCAGAAATCATCTCC 83
Query 61 AAGTTCGCTAAAGTCTGCAAATTTAGATCCATTGGTGTGTTCCCTGACCAAAA---G--- 114
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 84 AAGTTCGCTAAAGTCTGCAAATTTAGATCCATTGGTGTGTTCCCTGACCAAAAGTCGAAT 143
Query 115 TCC-A--A---TT-CGAA-T-GAGATCTTGGTGGATGATAAAGCAAAAGAAACTG-AGAT 164
||| | | || ||| | || |||||||||||||||||||| || ||||||| || |
Sbjct 144 TCCAACGACCTTTGTGAAGTAGAAATCTTGGTGGATGATAAAGCTAAGGAAACTGAAG-T 202
Query 165 TTGTGATTTCAATCACAAACCCTCTT-CAATGATTCAAACTTTTAGTTGGGATGATGGTG 223
||||||||| ||||||||||||| || ||| ||||||||||||| |||||||||||| ||
Sbjct 203 TTGTGATTTTAATCACAAACCCT-TTACAAAGATTCAAACTTTTTGTTGGGATGATGATG 261
Query 224 AGATATCGAAGCTTTTCGACATTGTTTCATCGCTTAAGCTAGCGTATCTTGAGTTTCAAC 283
|||||| ||||||||||||||| |||||| |||||||||| || ||| ||||||||||||
Sbjct 262 AGATATGGAAGCTTTTCGACATGGTTTCAGCGCTTAAGCTTGCTTATGTTGAGTTTCAAC 321
Query 284 AAGCTCATTTGCCTTATGATCCTGACAAGATCATTGAAGCAGACAACCTCGTCGTGTCTC 343
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 322 AAGCTCATTTGCCTTATGATCCAGATAAGATCATTGAAGCGGACAACCTCGTCGTGTCTC 381
Query 344 AGCTCGAGGCTTTACGAAGAATCAAGCGTCTCTATCTCAAAACGATACAGCTCAACGCAA 403
|||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 382 AGCTGGAGGCTTTACGCAGAATCAAGCGTCTCTACCTCAAAACGAAACAGCTCAACGCGA 441
Query 404 AGAAGACCGAGATTGCTGCTTCTTGTTTGGATAGG-TTGAGATATGAGATTGAAGTGAAT 462
||||||||||| ||||||||||||||||| || || |||||| |||||||||||||||||
Sbjct 442 AGAAGACCGAGTTTGCTGCTTCTTGTTTGAAT-GGATTGAGAGATGAGATTGAAGTGAAT 500
Query 463 GAGAAGCATTTGGAGAAACTTAAAGCACAAGTGAGAGCTAAGGAGAGTGAGATACACTCT 522
|||||| | ||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 501 GAGAAGGAACTGGAGAAACTTAAGGCACAAGTGAGAGCAAAGGAGAGTGAGATACACTCT 560
Query 523 TTGATTAAGAAACA--AGAATGTTTGGTTGCAGAGAATAGGAAAC-TCGAAAACAGGATT 579
|||| | |||| | ||| ||||||||||||||||||||||||| | ||| | ||||||
Sbjct 561 TTGA--AGGAAAGATTAGATTGTTTGGTTGCAGAGAATAGGAAACAT-GAAGAGAGGATT 617
Query 580 GTGAGTGTATCTTCCTTTGAATTCGCTTTTCGAGCTGCTTCAAAGTCGGTTCACGACTTT 639
|||||||| ||||| ||| |||||||||||||||||||||| ||| ||||||||||||||
Sbjct 618 GTGAGTGTTTCTTCGTTTCAATTCGCTTTTCGAGCTGCTTCTAAGGCGGTTCACGACTTT 677
Query 640 GCAAAGCCATTGATCACCCTGATGAAAGCTACAGATTGGAACTTGGAGAAAGCAGTGGAA 699
| |||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||
Sbjct 678 TCGAAGCCATTGATCACTCTGATGAAAGCTACAGATTGGAATTTGGACAAGGCAGTGGAA 737
Query 700 TCTATAGTTGGAAATGTAACATTTGCTAAGACCTCAGATAAGAAGTATGCTTTTGAGTCA 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TCTATAGTTGGAAATGTAACATTTGCTAAGACCTCAGATAAGAAGTATGCTTTTGAGTCA 797
Query 760 TACATTGTTCGGAGAATGTTTCACGGCATAAAGCTTAATCCATGTGATGTGACCGAACTA 819
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 798 TACATTGTTCGGAGAATGTTTCACGGCATTAAGCTTAATCCATGTGATGTGACCGAACTA 857
Query 820 ATGAGTTTCGATGATCCTTTAGACGCGTTAACAGCGTTTTCAGATTCCGCGTTTTCAAGA 879
||||| ||||||||||| || |||||||||||||||||| || |||||||||||||||||
Sbjct 858 ATGAGCTTCGATGATCCATTGGACGCGTTAACAGCGTTTCCAAATTCCGCGTTTTCAAGA 917
Query 880 TTCTGCGGTCAGAAGTATCTTTTAGTTGTTCATCCATCGATGGAGGCTTCATTCTTTGGG 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TTCTGCGGTCAGAAGTATCTTTTAGTTGTTCATCCATCGATGGAGGCTTCATTCTTTGGG 977
Query 940 AATTTGGATATGAGGGGACTAGTTTT 965
||| ||||||||||||||||||||||
Sbjct 978 AATATGGATATGAGGGGACTAGTTTT 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5