BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30380.1 Length=1560 Score E Sequences producing significant alignments: (Bits) Value Ahg933537 jgi|Araly1|933537|scaffold_401525.1 1319 0.0 > Ahg933537 jgi|Araly1|933537|scaffold_401525.1 Length=1307 Score = 1319 bits (714), Expect = 0.0 Identities = 900/986 (91%), Gaps = 27/986 (3%) Strand=Plus/Plus Query 1 ATGGACAATGCCGTTGTTAAAAGATCAAGTCCATCTTCGAATATATCAGAAGTTATCTCC 60 ||||| |||||||||| ||||| ||| |||||||||||||||||||||||| | |||||| Sbjct 24 ATGGAGAATGCCGTTGCTAAAACATCGAGTCCATCTTCGAATATATCAGAAATCATCTCC 83 Query 61 AAGTTCGCTAAAGTCTGCAAATTTAGATCCATTGGTGTGTTCCCTGACCAAAA---G--- 114 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 84 AAGTTCGCTAAAGTCTGCAAATTTAGATCCATTGGTGTGTTCCCTGACCAAAAGTCGAAT 143 Query 115 TCC-A--A---TT-CGAA-T-GAGATCTTGGTGGATGATAAAGCAAAAGAAACTG-AGAT 164 ||| | | || ||| | || |||||||||||||||||||| || ||||||| || | Sbjct 144 TCCAACGACCTTTGTGAAGTAGAAATCTTGGTGGATGATAAAGCTAAGGAAACTGAAG-T 202 Query 165 TTGTGATTTCAATCACAAACCCTCTT-CAATGATTCAAACTTTTAGTTGGGATGATGGTG 223 ||||||||| ||||||||||||| || ||| ||||||||||||| |||||||||||| || Sbjct 203 TTGTGATTTTAATCACAAACCCT-TTACAAAGATTCAAACTTTTTGTTGGGATGATGATG 261 Query 224 AGATATCGAAGCTTTTCGACATTGTTTCATCGCTTAAGCTAGCGTATCTTGAGTTTCAAC 283 |||||| ||||||||||||||| |||||| |||||||||| || ||| |||||||||||| Sbjct 262 AGATATGGAAGCTTTTCGACATGGTTTCAGCGCTTAAGCTTGCTTATGTTGAGTTTCAAC 321 Query 284 AAGCTCATTTGCCTTATGATCCTGACAAGATCATTGAAGCAGACAACCTCGTCGTGTCTC 343 |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| Sbjct 322 AAGCTCATTTGCCTTATGATCCAGATAAGATCATTGAAGCGGACAACCTCGTCGTGTCTC 381 Query 344 AGCTCGAGGCTTTACGAAGAATCAAGCGTCTCTATCTCAAAACGATACAGCTCAACGCAA 403 |||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||||| | Sbjct 382 AGCTGGAGGCTTTACGCAGAATCAAGCGTCTCTACCTCAAAACGAAACAGCTCAACGCGA 441 Query 404 AGAAGACCGAGATTGCTGCTTCTTGTTTGGATAGG-TTGAGATATGAGATTGAAGTGAAT 462 ||||||||||| ||||||||||||||||| || || |||||| ||||||||||||||||| Sbjct 442 AGAAGACCGAGTTTGCTGCTTCTTGTTTGAAT-GGATTGAGAGATGAGATTGAAGTGAAT 500 Query 463 GAGAAGCATTTGGAGAAACTTAAAGCACAAGTGAGAGCTAAGGAGAGTGAGATACACTCT 522 |||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 501 GAGAAGGAACTGGAGAAACTTAAGGCACAAGTGAGAGCAAAGGAGAGTGAGATACACTCT 560 Query 523 TTGATTAAGAAACA--AGAATGTTTGGTTGCAGAGAATAGGAAAC-TCGAAAACAGGATT 579 |||| | |||| | ||| ||||||||||||||||||||||||| | ||| | |||||| Sbjct 561 TTGA--AGGAAAGATTAGATTGTTTGGTTGCAGAGAATAGGAAACAT-GAAGAGAGGATT 617 Query 580 GTGAGTGTATCTTCCTTTGAATTCGCTTTTCGAGCTGCTTCAAAGTCGGTTCACGACTTT 639 |||||||| ||||| ||| |||||||||||||||||||||| ||| |||||||||||||| Sbjct 618 GTGAGTGTTTCTTCGTTTCAATTCGCTTTTCGAGCTGCTTCTAAGGCGGTTCACGACTTT 677 Query 640 GCAAAGCCATTGATCACCCTGATGAAAGCTACAGATTGGAACTTGGAGAAAGCAGTGGAA 699 | |||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||| Sbjct 678 TCGAAGCCATTGATCACTCTGATGAAAGCTACAGATTGGAATTTGGACAAGGCAGTGGAA 737 Query 700 TCTATAGTTGGAAATGTAACATTTGCTAAGACCTCAGATAAGAAGTATGCTTTTGAGTCA 759 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 738 TCTATAGTTGGAAATGTAACATTTGCTAAGACCTCAGATAAGAAGTATGCTTTTGAGTCA 797 Query 760 TACATTGTTCGGAGAATGTTTCACGGCATAAAGCTTAATCCATGTGATGTGACCGAACTA 819 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 798 TACATTGTTCGGAGAATGTTTCACGGCATTAAGCTTAATCCATGTGATGTGACCGAACTA 857 Query 820 ATGAGTTTCGATGATCCTTTAGACGCGTTAACAGCGTTTTCAGATTCCGCGTTTTCAAGA 879 ||||| ||||||||||| || |||||||||||||||||| || ||||||||||||||||| Sbjct 858 ATGAGCTTCGATGATCCATTGGACGCGTTAACAGCGTTTCCAAATTCCGCGTTTTCAAGA 917 Query 880 TTCTGCGGTCAGAAGTATCTTTTAGTTGTTCATCCATCGATGGAGGCTTCATTCTTTGGG 939 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 918 TTCTGCGGTCAGAAGTATCTTTTAGTTGTTCATCCATCGATGGAGGCTTCATTCTTTGGG 977 Query 940 AATTTGGATATGAGGGGACTAGTTTT 965 ||| |||||||||||||||||||||| Sbjct 978 AATATGGATATGAGGGGACTAGTTTT 1003 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58430435830 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5