BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30390.2
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481950 jgi|Araly1|481950|fgenesh2_kg.4__1010__AT2G30390.1 1338 0.0
> Ahg481950 jgi|Araly1|481950|fgenesh2_kg.4__1010__AT2G30390.1
Length=1683
Score = 1338 bits (724), Expect = 0.0
Identities = 776/801 (97%), Gaps = 3/801 (0%)
Strand=Plus/Plus
Query 1018 CAGGTTGTAATATTTTTCAGTGCACATGGCGTGCCTCTTGCATATGTCGAAGAAGCCGGT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 CAGGTTGTAATATTTTTCAGTGCACATGGCGTGCCTCTTGCATATGTCGAAGAAGCCGGT 926
Query 1078 GATCCTTACAAGGCAGAGATGGAAGAATGTGTTGATCTAATCATGGAGGAATTAGACAAG 1137
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 927 GATCCTTACAAGGCAGAGATGGAAGAATGTGTTGATCTGATCATGGAGGAATTAGACAAG 986
Query 1138 AGAAAGATAACTAATGCTTACACTCTTGCTTATCAGAGCAGAGTTGGACCAGTTGAATGG 1197
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 987 AGAAAGATAACTAATGCTTACACCCTTGCTTATCAGAGCAGAGTTGGACCAGTGGAATGG 1046
Query 1198 CTGAAACCATACACTGAAGAAGCCATTACTGAACTTGGTAAAAAAGGTGTTGAAAATCTT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 CTGAAACCATACACTGAAGAAGCCATTACTGAACTTGGTAAAAAAGGTGTTGAAAATCTT 1106
Query 1258 CTGGCTGTACCCATAAGTTTTGTGAGCGAGCACATTGAAACTCTGGAGGAGATAGATGTT 1317
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 CTGGCTGTACCCATAAGCTTTGTGAGCGAGCACATTGAAACTCTGGAGGAGATAGATGTT 1166
Query 1318 GAGTATAAAGAGTTGGCTTTGAAGTCTGGTATCAAAAACTGGGGGCGAGTACCTGCTCTA 1377
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1167 GAGTATAAAGAGTTGGCTTTAAAGTCTGGTATCAAAAACTGGGGGCGAGTACCTGCGCTA 1226
Query 1378 GGAACAGAACCTATGTTTATATCTGACTTGGCAGATGCTGTTGTGGAAAGTCTTCCATAC 1437
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1227 GGAACAGAACCCATGTTTATATCTGACTTGGCAGATGCTGTTGTGGAAAGTCTTCCTTAT 1286
Query 1438 GTTGGTGCTATGGCTGTCTCAAACCTTGAAGCTCGACAGTCGTTAGTTCCGCTCGGGAGT 1497
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 GTTGGAGCTATGGCAGTCTCAAACCTTGAAGCTCGACAGTCGTTAGTTCCGCTCGGGAGT 1346
Query 1498 GTAGAAGAATTATTAGCAACGTATGATTCACAGAGAAGGGAGTTACCAGCACCGGTGACA 1557
||||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 1347 GTAGAAGAACTATTAGCAACATATGATTCACAGAGGAGGGAGTTACCAGCGCCGGTGACA 1406
Query 1558 ATGTGGGAATGGGGATGGACAAAAAGTGCAGAAACATGGAACGGAAGAGCAGCAATGTTA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATGTGGGAATGGGGATGGACAAAAAGTGCAGAAACATGGAACGGAAGAGCAGCAATGTTA 1466
Query 1618 GCGGTGCTAGCACTCTTGGTGCTCGAAGTCACCACCGGAAAAGGGTTTCTGCATCAGTGG 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 GCGGTGCTAGCACTCTTGGTGCTCGAAGTCACCACCGGAAAAGGGTTTCTGCATCAGTGG 1526
Query 1678 GGCATCTTGCCTTCATTATAATAAAGATAACGTATAGTCTTTTTCTCTATGA-AAACCCA 1736
|| |||||||||||||||||||||||| | | |||||||||||||||||| | ||||| |
Sbjct 1527 GGGATCTTGCCTTCATTATAATAAAGA-A-CATATAGTCTTTTTCTCTATCACAAACCAA 1584
Query 1737 ATCCAAGAATCCAAATGTGAGCTTTCACATGTGGAATAAGGCCAGCTATGTTATTATGCT 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1585 ATCCAAGAATCCAAATGTGAGCTTTCACATGTGGAATAAGGCCAGCTATGTTACTATACT 1644
Query 1797 CTCTTCTTCTCTGTTGTAGAA 1817
|||||||||| ||||||||||
Sbjct 1645 CTCTTCTTCTTTGTTGTAGAA 1665
Score = 1317 bits (713), Expect = 0.0
Identities = 821/873 (94%), Gaps = 8/873 (1%)
Strand=Plus/Plus
Query 122 TTTTTGCAATGAATTGCCCAGCCATGACTGcttctccttcttcttcctcttcttcttcct 181
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 TTTTGGCAATGAATTGCCCAGCCATGACTGCTTCTCCTTCTTCTTGCTCTTCTTCTTCCT 60
Query 182 actcaacgtt--tcgtcc--tcctcctccactcttGCCACAATTGAGTAACGATTCACAA 237
|| | || || || || ||||||||||||||||||||||||||| ||||||||
Sbjct 61 GTTCCTC-TTACTCCACCTTTCGTCCTCCACTCTTGCCACAATTGAGTAATGATTCACAG 119
Query 238 AGATCTGTTGTTATGCACTGCACAAGATTACCCTTTGAAGCATTTGCTGCTACTTCATCA 297
|||||| ||| || ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 120 AGATCTATTG-TA--CACTGTTCAAGATTACCCTTTGAAGCATTTGCTACTACTTCATCA 176
Query 298 AACCGGCTTCTTGGGAAACATTCATTGCCTTTGAGAGCAGCTTTGGTTACTTCGAACCCT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 177 AACCGGCTTCTTGGGAAACATTCATTGCCTTTGAGAGCAGCTTTGGTTACTTCAAACCCT 236
Query 358 TTAAACATTTCATCTTCCTCAGTTATCTCTGATGCCATTTCATCTTCCTCTGTTATCACT 417
| |||||||||||||||||| |||||| |||||| ||||||||| ||||||||||||||
Sbjct 237 TCAAACATTTCATCTTCCTCTGTTATCAGTGATGCTATTTCATCTGCCTCTGTTATCACT 296
Query 418 GATGATGCCAAAATTGGTGTCTTGTTATTAAACCTTGGAGGTCCTGAGACTTTAGATGAT 477
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 297 GATGATGCCAAAATTGGTGTCTTGTTATTGAACCTTGGAGGTCCTGAGACTTTAGATGAT 356
Query 478 GTACAACCCTTTTTGTTTAACCTCTTCGCCGACCCGGACATTATACGGTTGCCGCCGGTA 537
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 357 GTTCAACCTTTTTTGTTTAACCTCTTCGCCGACCCGGACATTATACGGTTGCCACCGCTA 416
Query 538 TTCCAGTTTCTTCAGAAGCCATTAGCACAGTTTATATCAGTAGCAAGAGCACCCAAAAGC 597
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 417 TTCCAGTTTCTTCAGAAGCCATTAGCACAGTTTATATCAGTAGCAAGGGCTCCCAAAAGC 476
Query 598 AAGGAAGGATATGCATCTATTGGTGGAGGTTCTCCTCTTCGCCACATAACTGATGCACAG 657
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 477 AAGGAAGGATATGCATCTATTGGTGGTGGTTCTCCTCTTCGCCACATAACTGATGCACAG 536
Query 658 GCTGAAGAATTAAGAAAATGCCTTTGGGaaaaaaaTGTACCAGCAAAGGTATATGTTGGT 717
||||||||||||||||| | ||||||||| |||||||| |||||||||||||||||||||
Sbjct 537 GCTGAAGAATTAAGAAAGTCCCTTTGGGAGAAAAATGTCCCAGCAAAGGTATATGTTGGT 596
Query 718 ATGCGGTATTGGCATCCATTCACTGAGGAAGCCATTGAACAGATAAAAAGAGATGGAATT 777
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATGCGGTATTGGCATCCGTTCACTGAGGAAGCCATTGAACAGATAAAAAGAGATGGAATT 656
Query 778 ACAAAACTAGTTGTTCTACCACTTTATCCTCAATTTTCTATATCAACTAGTGGTTCAAGC 837
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 657 ACAAAACTAGTTGTTCTACCACTTTATCCTCAATTTTCGATATCGACTAGTGGTTCAAGC 716
Query 838 CTAAGACTCTTGGAGAGAATATTTCGAGAGGACGAGTATCTTGTTAACATGCAACATACT 897
|||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 717 CTAAGACTCTTGGAGAGAATATTTAGAGAGGACGAGTATCTTGTGAACATGCAGCATACT 776
Query 898 GTTATACCATCGTGGTATCAGCGGGAGGGATATATAAAGGCAATGGCAAATCTAATCCAA 957
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 777 GTTATACCATCTTGGTATCAGCGGGAGGGATATATAAAAGCAATGGCAAATCTAATCCAA 836
Query 958 AGCGAGTTGGGAAAATTTGGTTCTCCTAATCAG 990
||||||||||||||||||||||| |||| ||||
Sbjct 837 AGCGAGTTGGGAAAATTTGGTTCCCCTAGTCAG 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70543133740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5