BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30395.1 Length=829 Score E Sequences producing significant alignments: (Bits) Value Ahg344803 jgi|Araly1|344803|fgenesh1_pg.C_scaffold_4001145 909 0.0 > Ahg344803 jgi|Araly1|344803|fgenesh1_pg.C_scaffold_4001145 Length=588 Score = 909 bits (492), Expect = 0.0 Identities = 558/590 (95%), Gaps = 4/590 (1%) Strand=Plus/Plus Query 7 ATGAGAGTGAAAGCAACTTTGATTAACTTCAAATCAAAGCTTTCGAAATCATGCAACAGA 66 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGAGAGTGAAAGCAACTTTGATTAACTTCAAATCAAAGCTTTCCAAATCATGCAACAGA 60 Query 67 TTTGTCTCTCTCTTCCGCTTCCGAGTTAAAAGACCTGTCTTTATTAGACCTCTTCGTGCC 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTTGTCTCTCTCTTCCGCTTCCGAGTTAAAAGACCTGTCTTTATTAGACCTCTTCGTGCC 120 Query 127 CGTCATGGCAATGTCAAACCTAGACATCAACATCATCATTCCAAGAAGCCAATCTGTTCT 186 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 121 CGTCATGGCAATGTCAAACCTAGACATCAACATCATCATCCCAAGAAGCCAATCTGTTCC 180 Query 187 TGTCTCTGTTTCCTCAATTCAAGCAAGAACCATAAGATGAGCAACGCCAAAC-ATAGAAG 245 ||||| ||||| |||| ||||||||||||| ||||||||||| |||||| | ||| Sbjct 181 TGTCTTTGTTTTCTCAGCACAAGCAAGAACCACAAGATGAGCAAAACCAAACCA-AGATC 239 Query 246 TTCCTCTTTTAGTGTGAACGATGATGATTACTCCAAGTTTATGCAATCACCTCTTACGCC 305 |||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct 240 TTCCTCTTTTAGTGTGAACGATGATGATTATTCCAAGTTTATGCACTCACCTCTCACGCC 299 Query 306 AGCAACAGCCAAGAAGCTCTTCACTTCACCCATCACGACACCTTACTCTTCACGGACCAG 365 |||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| Sbjct 300 AGCAACAGCCAAGAAGCTATTCACTTCACCCATCACGACGCCTTACTCTACACGGACCAG 359 Query 366 GAAATCGCTGAACGCAAGAGATA-CATTTGAAGACAATGCTGTGGAAGATGCTTGTAGAA 424 |||||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| Sbjct 360 AAAATCGCTGAACTCAAGAGA-AGCATTCGAAGACAATGCGGTGGAAGATGCTTGTAGAA 418 Query 425 GCTTTGAAAACTATCTGATTCATCTGATTGTTGAAGAAGGGAAAATAGATGACTTAATGG 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GCTTTGAAAACTATCTGATTCATCTGATTGTTGAAGAAGGGAAAATAGATGACTTAATGG 478 Query 485 ACATAGAGGAACTTCTCTTCTGTTGGAAGAATCTTAAGAGTCCTGTCTTCATTGAACTTG 544 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 479 ACATAGAGGAGCTTCTCTTCTGTTGGAAGAATCTAAAGAGTCCTGTCTTCATTGAACTTG 538 Query 545 TCTCAAGATTTTATGGAGAACTCTGTAGAGACTTGTTTTCAGGTGAATGA 594 |||||||||| |||||||||||||| |||||| ||||||||||||||||| Sbjct 539 TCTCAAGATTCTATGGAGAACTCTGCAGAGACCTGTTTTCAGGTGAATGA 588 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30650825268 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5