BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30395.1
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344803 jgi|Araly1|344803|fgenesh1_pg.C_scaffold_4001145 909 0.0
> Ahg344803 jgi|Araly1|344803|fgenesh1_pg.C_scaffold_4001145
Length=588
Score = 909 bits (492), Expect = 0.0
Identities = 558/590 (95%), Gaps = 4/590 (1%)
Strand=Plus/Plus
Query 7 ATGAGAGTGAAAGCAACTTTGATTAACTTCAAATCAAAGCTTTCGAAATCATGCAACAGA 66
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAGAGTGAAAGCAACTTTGATTAACTTCAAATCAAAGCTTTCCAAATCATGCAACAGA 60
Query 67 TTTGTCTCTCTCTTCCGCTTCCGAGTTAAAAGACCTGTCTTTATTAGACCTCTTCGTGCC 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGTCTCTCTCTTCCGCTTCCGAGTTAAAAGACCTGTCTTTATTAGACCTCTTCGTGCC 120
Query 127 CGTCATGGCAATGTCAAACCTAGACATCAACATCATCATTCCAAGAAGCCAATCTGTTCT 186
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CGTCATGGCAATGTCAAACCTAGACATCAACATCATCATCCCAAGAAGCCAATCTGTTCC 180
Query 187 TGTCTCTGTTTCCTCAATTCAAGCAAGAACCATAAGATGAGCAACGCCAAAC-ATAGAAG 245
||||| ||||| |||| ||||||||||||| ||||||||||| |||||| | |||
Sbjct 181 TGTCTTTGTTTTCTCAGCACAAGCAAGAACCACAAGATGAGCAAAACCAAACCA-AGATC 239
Query 246 TTCCTCTTTTAGTGTGAACGATGATGATTACTCCAAGTTTATGCAATCACCTCTTACGCC 305
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 240 TTCCTCTTTTAGTGTGAACGATGATGATTATTCCAAGTTTATGCACTCACCTCTCACGCC 299
Query 306 AGCAACAGCCAAGAAGCTCTTCACTTCACCCATCACGACACCTTACTCTTCACGGACCAG 365
|||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 300 AGCAACAGCCAAGAAGCTATTCACTTCACCCATCACGACGCCTTACTCTACACGGACCAG 359
Query 366 GAAATCGCTGAACGCAAGAGATA-CATTTGAAGACAATGCTGTGGAAGATGCTTGTAGAA 424
|||||||||||| ||||||| | |||| ||||||||||| |||||||||||||||||||
Sbjct 360 AAAATCGCTGAACTCAAGAGA-AGCATTCGAAGACAATGCGGTGGAAGATGCTTGTAGAA 418
Query 425 GCTTTGAAAACTATCTGATTCATCTGATTGTTGAAGAAGGGAAAATAGATGACTTAATGG 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCTTTGAAAACTATCTGATTCATCTGATTGTTGAAGAAGGGAAAATAGATGACTTAATGG 478
Query 485 ACATAGAGGAACTTCTCTTCTGTTGGAAGAATCTTAAGAGTCCTGTCTTCATTGAACTTG 544
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 ACATAGAGGAGCTTCTCTTCTGTTGGAAGAATCTAAAGAGTCCTGTCTTCATTGAACTTG 538
Query 545 TCTCAAGATTTTATGGAGAACTCTGTAGAGACTTGTTTTCAGGTGAATGA 594
|||||||||| |||||||||||||| |||||| |||||||||||||||||
Sbjct 539 TCTCAAGATTCTATGGAGAACTCTGCAGAGACCTGTTTTCAGGTGAATGA 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30650825268
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5