BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30400.1
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481952 jgi|Araly1|481952|fgenesh2_kg.4__1012__AT2G30400.1 1447 0.0
Ahg497281 jgi|Araly1|497281|fgenesh2_kg.136__1__AT2G30400.1 1432 0.0
> Ahg481952 jgi|Araly1|481952|fgenesh2_kg.4__1012__AT2G30400.1
Length=957
Score = 1447 bits (783), Expect = 0.0
Identities = 905/962 (94%), Gaps = 16/962 (2%)
Strand=Plus/Plus
Query 31 GATGGGGAATTACAAGTTCAGAATTTCAGAGATGCTCCCAAATGCATGGTTCCACAAGCT 90
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GATGGGGAATTACAAGTTCAGAATTTCAGAAATGCTCCCAAATGCATGGTTCCACAAGCT 60
Query 91 CAAAGACGTGACTAAACACTCTAAACCCAAAAACAAAGCTTCTTCTTCTTCCTCAAACAC 150
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 CAAAGACATGACTAAACACTCTAAACCCAAAAACAAATCTTCTTCTTCTTCCTCAAACAC 120
Query 151 TTGTAGCAAGAAGAAACCTTCCTCAGATTCTCTTCCTCAACACTCTTATTTCTCCAACAG 210
|||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct 121 TTGTAGCAAGAAGAAACCTTACTCAGATTCTCTTCCTCATCACTCTGATTTCTCCAACAG 180
Query 211 CTTAGTAGCTAACAATCCTCCTCACCATAACTCACCAAGAAACTCTCTTCACACAAAAAA 270
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTAGTAGCTAACAATCCTCCTCACCATAACTCACCAAGAAACTCTCTTCACACAAAAAG 240
Query 271 GATGAGTAAAAGAAAGACACTTTACAAGCCATCCCTTAAACCTTTGACTCCTCCTCCTCT 330
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 241 GATGAGTAAGAGAAAGACACTTTACAAGCCATCCCTTAAACCTTTGACTCCTCCT-C-C- 297
Query 331 TCTTGTATCTGCAAGTTTCAACAAGAGCAAGATCAACGATCAAGATTCGTCTTACAGCTT 390
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 298 TCTTGTATCTGCAAGTTTCAACAAGAGCAAGATCAACGGTCAGGATTCGTCTTACAGCTT 357
Query 391 GTTCCCGGCTATTGAAACCTCCCCTGAGTCTTTTGTGTATAGTTTCTACGAAGAGGATGA 450
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 GTTCCCAGCTCTTGAAACCTCCCCTGAGTCTTTTGTGTATAGTTTCTACGAAGAGGAGGA 417
Query 451 TGATGATGAGTTCGTTGAATTTTCCAACTTCAAGATCAACACAAAGAACAAAGCTTTCAC 510
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGAGGATGAGTTCGTTGACTTTTCCAACTTCAAGATCAACACAAAGAACAAAGCTTTCAC 477
Query 511 CAAGCAGAAGGTCAAAGTGATTGATTCGGTAGAGAAAGCTTGTAC-TGCAAGCAAGCCGA 569
|||||| |||||||||||| |||||||| ||||||||||||| | |||||| || ||||
Sbjct 478 CAAGCACAAGGTCAAAGTGTTTGATTCGAAAGAGAAAGCTTGT-CTTGCAAGTAATCCGA 536
Query 570 TTAAGAAACCGCAGAAAAGCCATCTTTCTGTGAAAATT-TCA-AGAG-ATGAAGATG-AT 625
| |||||||||||||||||||||||||||||||||||| || |||| | ||||| | |
Sbjct 537 TCAAGAAACCGCAGAAAAGCCATCTTTCTGTGAAAATTAACAGAGAGAAAGAAGAAGAAG 596
Query 626 A--A---TGAATATAAAGCCGAGAAGAAGTACCAAAGGCAAGTTTCTAGTGGAAGAAAAC 680
| | |||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 597 ACGATGGTGAATATAGAGCAGAGAAGAAATACCAAAGGCAAGTTTCTAGTGGAAGAAAAT 656
Query 681 CATCTGCTGGGATAAACCTCAAAAGAGTGAATTCACCTAGAATTCAACTCTCAGGTACTC 740
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 CATCTGCTGGGATAAACCTCAAAAGAGTAAATTCACCTAGAATTCAACTCTCAGGTACTC 716
Query 741 GTAGAAGCACTTCTAGAAGATCAGAGAGCAAACAAGATGTTCTAGAGAGCTTCGCTGTGA 800
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 717 GTAGAAGCACTTCTAGAAGATCAGAGAGCAAACAAGATGTTCTTGAGAGCTTCGCTGTGA 776
Query 801 TGAAGCGGTCCGTTG-ATCCAAAGAAAGATTTCAGGGAATCAATGATTGAGATGATAGAA 859
||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 TGAAGCGGTCC-TTGGATCCAAAGAAAGATTTTAGGGAATCAATGATTGAGATGATAGAA 835
Query 860 GAGAACAACATCAGAGCTTCGAAAGACTTGGAAGACCTTCTTGCTTGCTACCTTACTTTG 919
|||||||||||||||||||| ||||||||||| || ||||||||||| |||||| |||||
Sbjct 836 GAGAACAACATCAGAGCTTCAAAAGACTTGGAGGATCTTCTTGCTTGTTACCTTTCTTTG 895
Query 920 AATCCAAAGGAGTATCATGATCTTATCATCCATGTTTTCGAACAAATCTGGCTTCAACTT 979
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 896 AATCCAAAAGAGTATCATGATCTTATCATCCATGTTTTCGAACAAATCTGGCTTCAGCTT 955
Query 980 AC 981
||
Sbjct 956 AC 957
> Ahg497281 jgi|Araly1|497281|fgenesh2_kg.136__1__AT2G30400.1
Length=958
Score = 1432 bits (775), Expect = 0.0
Identities = 903/963 (94%), Gaps = 16/963 (2%)
Strand=Plus/Plus
Query 30 AGATGGGGAATTACAAGTTCAGAATTTCAGAGATGCTCCCAAATGCATGGTTCCACAAGC 89
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AGATGGGGAATTACAAGTTCAGAATTTCAGAAATGCTCCCAAATGCATGGTTCCACAAGC 60
Query 90 TCAAAGACGTGACTAAACACTCTAAACCCAAAAACAAAGCTTCTTCTTCTTCCTCAAACA 149
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TCAAAGACATGACTAAACACTCTAAACCCAAAAACAAATCTTCTTCTTCTTCCTCAAACA 120
Query 150 CTTGTAGCAAGAAGAAACCTTCCTCAGATTCTCTTCCTCAACACTCTTATTTCTCCAACA 209
||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||
Sbjct 121 CTTGTAGCAAGAAGAAACCTTACTCAGATTCTCTTCCTCATCACTCTGATTTCTCCAACA 180
Query 210 GCTTAGTAGCTAACAATCCTCCTCACCATAACTCACCAAGAAACTCTCTTCACACAAAAA 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTTAGTAGCTAACAATCCTCCTCACCATAACTCACCAAGAAACTCTCTTCACACAAAAA 240
Query 270 AGATGAGTAAAAGAAAGACACTTTACAAGCCATCCCTTAAACCTTTGACTCCTCCTCCTC 329
||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 241 GGATGAGTAAAAGAAAGACACTGGGCAAGCCATCCCTTAAACCTTTGACTCCTCCT-C-C 298
Query 330 TTCTTGTATCTGCAAGTTTCAACAAGAGCAAGATCAACGATCAAGATTCGTCTTACAGCT 389
||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 299 -TCTTGTATCTGCAAGTTTCAAGAAGAGCAAAATCAACGGTCAAGATTCGTCTTACAGCT 357
Query 390 TGTTCCCGGCTATTGAAACCTCCCCTGAGTCTTTTGTGTATAGTTTCTACGAAGAGGATG 449
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 358 TGTTCCCAGCTCTTGAAACCTCCCCTGAGTCTTTTGTGTATAGTTTCTACGAAGAGGAGG 417
Query 450 ATGATGATGAGTTCGTTGAATTTTCCAACTTCAAGATCAACACAAAGAACAAAGCTTTCA 509
| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGGAGGATGAGTTCGTTGACTTTTCCAACTTCAAGATCAACACAAAGAACAAAGCTTTCA 477
Query 510 CCAAGCAGAAGGTCAAAGTGATTGATTCGGTAGAGAAAGCTTGTAC-TGCAAGCAAGCCG 568
||||||| |||||||||||| |||||||| ||||||||||||| | |||||| || |||
Sbjct 478 CCAAGCACAAGGTCAAAGTGTTTGATTCGAAAGAGAAAGCTTGT-CTTGCAAGTAATCCG 536
Query 569 ATTAAGAAACCGCAGAAAAGCCATCTTTCTGTGAAAATT-TCA-AGAG-ATGAAGATG-A 624
|| |||||||||||||||||||||||||||||||||||| || |||| | ||||| | |
Sbjct 537 ATCAAGAAACCGCAGAAAAGCCATCTTTCTGTGAAAATTAACAGAGAGAAAGAAGAAGAA 596
Query 625 TA--A---TGAATATAAAGCCGAGAAGAAGTACCAAAGGCAAGTTTCTAGTGGAAGAAAA 679
| | |||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 597 GACGATGGTGAATATAGAGCAGAGAAGAAATACCAAAGGCAAGTTTCTAGTGGAAGAAAA 656
Query 680 CCATCTGCTGGGATAAACCTCAAAAGAGTGAATTCACCTAGAATTCAACTCTCAGGTACT 739
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 657 TCATCTGCTGGGATAAACCTCAAAAGAGTAAATTCACCTAGAATTCAACTCTCAGGTACT 716
Query 740 CGTAGAAGCACTTCTAGAAGATCAGAGAGCAAACAAGATGTTCTAGAGAGCTTCGCTGTG 799
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 717 CGTAGAAGCACTTCTAGAAGATCAGAGAGCAAACAAGATGTTCTTGAGAGCTTCGCTGTG 776
Query 800 ATGAAGCGGTCCGTTG-ATCCAAAGAAAGATTTCAGGGAATCAATGATTGAGATGATAGA 858
|||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 777 ATGAAGCGGTCC-TTGGATCCAAAGAAAGATTTTAGGGAATCAATGATTGAGATGATAGA 835
Query 859 AGAGAACAACATCAGAGCTTCGAAAGACTTGGAAGACCTTCTTGCTTGCTACCTTACTTT 918
||||||||||||||||||||| ||||||||||| || ||||||||||| |||||| ||||
Sbjct 836 AGAGAACAACATCAGAGCTTCAAAAGACTTGGAGGATCTTCTTGCTTGTTACCTTTCTTT 895
Query 919 GAATCCAAAGGAGTATCATGATCTTATCATCCATGTTTTCGAACAAATCTGGCTTCAACT 978
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 896 GAATCCAAAAGAGTATCATGATCTTATCATCCATGTTTTCGAACAAATCTGGCTTCAGCT 955
Query 979 TAC 981
|||
Sbjct 956 TAC 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36941106573
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5