BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30410.1
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497282 jgi|Araly1|497282|fgenesh2_kg.136__2__AT2G30410.1 774 0.0
Ahg481953 jgi|Araly1|481953|fgenesh2_kg.4__1013__AT2G30410.1 736 0.0
> Ahg497282 jgi|Araly1|497282|fgenesh2_kg.136__2__AT2G30410.1
Length=760
Score = 774 bits (419), Expect = 0.0
Identities = 508/549 (93%), Gaps = 14/549 (3%)
Strand=Plus/Plus
Query 1 CGAGCACACAAGTGAGTGCATATCCAGT--ATTAAG-ttttttttttAATAATTCAGAAT 57
||||||||| |||||||||||||||| | | |||| |||||||||| | |||||| |||
Sbjct 1 CGAGCACACGAGTGAGTGCATATCCAATAAAATAAGATTTTTTTTTTTA-AATTCAAAAT 59
Query 58 TGAAAGCAAAGGAAAAAGAAGAAATCGAAATCGGAAACTGTATATTGTTGTTCTTCGATT 117
||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |
Sbjct 60 TGAAAGCAAAGGAAAAAAAAGAAATCGAAATCGGAAAGTGTATATTGTTGTTCCTCGA-T 118
Query 118 CCTCCTCGCTCTACGCCGCGTCCTCTCTCTCAAATTCATC-G--G--AAGCAACCTTCTT 172
|||||||||| |||||||| |||||||||||||||||| | | |||||||||||||
Sbjct 119 --TCCTCGCTCTGCGCCGCGTTCTCTCTCTCAAATTCATCGGAAGCAAAGCAACCTTCTT 176
Query 173 CTCCCATCATCGCCTGAATCCAATGGCAACGATAAGGAACTTGAAGATAAAAACATCAAC 232
|||| ||| ||| ||| |||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 177 CTCCGATCTTCGTCTGGATCCAATGGCAACGATTAGGAACTTGAAGATAAAAACATCGAC 236
Query 233 ATGTAAAAGGATTGTGAAAGAGCTTCACTCTTATGAGAAAGAAGTTGAGAGAGAAGCGGC 292
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 237 ATGTAAAAGGATTGAGAAAGAGCTTCACTCTTATGAGAAAGAAGTTGAGAGAGAAGCTGC 296
Query 293 TAAGACTGCTGATATGAAGGACAAAGGTGCTGATCCCTACGACCTTAAACAACAGGAAAA 352
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TAAGACTGCTGCTATGAAGGACAAAGGTGCTGATCCCTACGACCTTAAACAACAGGAAAA 356
Query 353 TGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCTGCATT 412
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 357 TGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGACTCGAGGCTGCATT 416
Query 413 GGCTGACCTCAAGTCCACTTTGGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGA 472
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGCTGAACTCAAGTCCACTTTGGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGA 476
Query 473 GATCGAAGATGCAAAGAAGACAGTCGCGGA-TGTGGAGAAGCAGTTTCCCACTGAAGATG 531
||| |||||||||||||||||||| |||| | ||||||||||||||| |||||||||||
Sbjct 477 GATTGAAGATGCAAAGAAGACAGTTGCGGGCT-TGGAGAAGCAGTTTCACACTGAAGATG 535
Query 532 CCTGATTTA 540
|||||||||
Sbjct 536 CCTGATTTA 544
> Ahg481953 jgi|Araly1|481953|fgenesh2_kg.4__1013__AT2G30410.1
Length=701
Score = 736 bits (398), Expect = 0.0
Identities = 463/494 (94%), Gaps = 6/494 (1%)
Strand=Plus/Plus
Query 48 AATTCAGAATTGAAAGCAAAGGAAAAAGAAGAAATCGAAATCGGAAACTGTATATTGTTG 107
|||||| ||||||||||||||||| || ||||||||||||||||| | ||||||||||||
Sbjct 1 AATTCAAAATTGAAAGCAAAGGAAGAA-AAGAAATCGAAATCGGATAGTGTATATTGTTG 59
Query 108 TTCTTCGATTCCTCCTCGCTCTACGCCGCGTCCTCTCTCTCAAATTCATCGGAAGCAACC 167
|||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 60 TTCTTCGA-T--TCCTCGCTCTGCGCCGCGTTCTCTCTCTCAAATTCATCGGAAGCAACC 116
Query 168 TTCTTCTCCCATCATCGCCTGAATCCAATGGCAACGATAAGGAACTTGAAGATAAAAACA 227
||||||||| ||| ||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 117 TTCTTCTCCGATCTTCGTCTGTATCCAATGGCAACGATTAGGAACTTGAAGATAAAAACA 176
Query 228 TCAACATGTAAAAGGATTGTGAAAGAGCTTCACTCTTATGAGAAAGAAGTTGAGAGAGAA 287
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TCGACATGTAAAAGGATTGAGAAAGAGCTTCACTCTTATGAGAAAGAAGTTGAGAGAGAA 236
Query 288 GCGGCTAAGACTGCTGATATGAAGGACAAAGGTGCTGATCCCTACGACCTTAAACAACAG 347
|| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 237 GCTGCTAAGACTGCTGCTATGAAGGACAAAGGTGCTGATCCCTACGATCTTAAACAGCAG 296
Query 348 GAAAATGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCT 407
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 297 GAAAATGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGACTCGAGGCT 356
Query 408 GCATTGGCTGACCTCAAGTCCACTTTGGCGGAATTGGAAGAGACGGATGAGAAGGAAGGT 467
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GCATTAGCTGAACTCAAGTCCACTTTGGCGGAATTGGAAGAGACGGATGAGAAGGAAGGT 416
Query 468 CCAGAGATCGAAGATGCAAAGAAGACAGTCGCGGA-TGTGGAGAAGCAGTTTCCCACTGA 526
|||||||| |||||||||||||||||||| |||| | ||||||||||||||| ||||||
Sbjct 417 CCAGAGATTGAAGATGCAAAGAAGACAGTTGCGGGCT-TGGAGAAGCAGTTTCACACTGA 475
Query 527 AGATGCCTGATTTA 540
||||||||||||||
Sbjct 476 AGATGCCTGATTTA 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29316523173
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5