BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30420.1
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933542 jgi|Araly1|933542|scaffold_401530.1 418 3e-116
Ahg888011 jgi|Araly1|888011|Al_scaffold_0136_3 405 2e-112
Ahg933543 jgi|Araly1|933543|scaffold_401531.1 248 4e-65
Ahg481955 jgi|Araly1|481955|fgenesh2_kg.4__1015__AT2G30432.1 219 3e-56
Ahg357563 jgi|Araly1|357563|fgenesh1_pg.C_scaffold_8001350 204 8e-52
> Ahg933542 jgi|Araly1|933542|scaffold_401530.1
Length=351
Score = 418 bits (226), Expect = 3e-116
Identities = 300/334 (90%), Gaps = 12/334 (4%)
Strand=Plus/Plus
Query 227 TTCTTCTA-TTTTC-CAGTAGTTATGGATAATACCAACCGTCTTCGTCTTCGTCGCGGTC 284
||||| || ||| | |||||||||||||||||||||| | ||||||||||||||||
Sbjct 3 TTCTTATACTTTCCACAGTAGTTATGGATAATACCAA----C--CGTCTTCGTCGCGGTC 56
Query 285 CCAGTCTTAGGCAAACTAAGTTCACTCGATCCCGATATGACTCTGAAGAAGTGAGTAGCA 344
|||| |||||||||| ||||||||| |||| ||| ||||||| ||||||||||||||||
Sbjct 57 GCAGTTTTAGGCAAACCAAGTTCACTAGATCGCGACATGACTCCGAAGAAGTGAGTAGCA 116
Query 345 TCGAATGGGAGTTTATCAGTATGACCGAACAAGAAGAAGATCTCATCTCTCGAATGTACA 404
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 117 TCGAATGGGAGTTTATCAGTATGACCGAACAAGAGGAAGATCTCATCTCTCGAATGCACA 176
Query 405 GACTTGTCGGTAATAGGTGGGATTTAATAGCAGGAAGAGTCGTAGGAAGAAAGGCAAATG 464
||||||||||| |||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 177 GACTTGTCGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGGTCGGACGAAAGGCAAATG 236
Query 465 AGATTGAGAGATACTGGATTATGAGAAACTCTGACTATTTT-TCTCACAAACGACGACGT 523
|||||||||||| |||||||||||||||||||||| |||| || |||||||||||||
Sbjct 237 AGATTGAGAGATTTTGGATTATGAGAAACTCTGACT-TTTTCTCCCACAAACGACGACA- 294
Query 524 CTT-AATAATTCTCCCtttttttCTACTTCTCCT 556
||| || |||||||||||||||||| || |||||
Sbjct 295 CTTTAACAATTCTCCCTTTTTTTCTTCTCCTCCT 328
> Ahg888011 jgi|Araly1|888011|Al_scaffold_0136_3
Length=306
Score = 405 bits (219), Expect = 2e-112
Identities = 267/290 (92%), Gaps = 4/290 (1%)
Strand=Plus/Plus
Query 269 CGTCTTCGTCGCGGTCCCAGTCTTAGGCAAACTAAGTTCACTCGATCCCGATATGACTCT 328
|||||||||||||||| |||| |||||||||| ||||||||| |||| ||| |||||||
Sbjct 16 CGTCTTCGTCGCGGTCGCAGTTTTAGGCAAACCAAGTTCACTAGATCGCGACATGACTCC 75
Query 329 GAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAAGAAGATCTC 388
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 76 GAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAGGAAGATCTC 135
Query 389 ATCTCTCGAATGTACAGACTTGTCGGTAATAGGTGGGATTTAATAGCAGGAAGAGTCGTA 448
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 136 ATCTCTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGGTC 195
Query 449 GGAAGAAAGGCAAATGAGATTGAGAGATACTGGATTATGAGAAACTCTGACTATTTT-TC 507
||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| ||
Sbjct 196 GGACGAAAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAACTCTGACT-TTTTCTC 254
Query 508 TCACAAACGACGACGTCTT-AATAATTCTCCCtttttttCTACTTCTCCT 556
||||||||||||| ||| || |||||||||||||||||| || |||||
Sbjct 255 CCACAAACGACGACA-CTTTAACAATTCTCCCTTTTTTTCTTCTCCTCCT 303
> Ahg933543 jgi|Araly1|933543|scaffold_401531.1
Length=348
Score = 248 bits (134), Expect = 4e-65
Identities = 230/274 (84%), Gaps = 16/274 (6%)
Strand=Plus/Plus
Query 248 ATGGATAATACCAACCGTCTTCGTCTTCGTCGCGGTCCCAGTCTTAGGCAAACTAAGTTC 307
|||||||| |||||||||||||| || || | || ||||| || |||||| ||||||
Sbjct 23 ATGGATAACACCAACCGTCTTCG---TC-TC-C-TTCGCAGTCCTAAGCAAACCAAGTTC 76
Query 308 ACTCGATCCCGATATGACTCTGAAGAAGTGAGTAGCATCG-AATGGGAGTTTATCAGTAT 366
|||| | || |||||| ||||| || ||||| | | |||||||||||| || |||
Sbjct 77 ACTC--T-ACG---TGACTCCGAAGAGGTAAGTAGTGT-GAAATGGGAGTTTACCAATAT 129
Query 367 GACCGAACAAGAAGAAGATCTCATCTCTCGAATGTACAGACTTGTCGGTAATAGGTGGGA 426
||| |||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||
Sbjct 130 GACGGAACAAGAAGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGA 189
Query 427 TTTAATAGCAGGAAGAGTCGTAGGAAGAAAGGCAAATGAGATTGAGAGATACTGGATTAT 486
|||||||||||||||||| |||||| || ||||||| || || |||||||||||||||||
Sbjct 190 TTTAATAGCAGGAAGAGTGGTAGGACGAGAGGCAAAAGACATAGAGAGATACTGGATTAT 249
Query 487 GAGAAACTCTGACTATTTTTCTCA-CAAACGACG 519
|||||||| |||| ||| ||| || |||||||||
Sbjct 250 GAGAAACTGTGACCATTGTTC-CAACAAACGACG 282
> Ahg481955 jgi|Araly1|481955|fgenesh2_kg.4__1015__AT2G30432.1
Length=440
Score = 219 bits (118), Expect = 3e-56
Identities = 172/198 (87%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 324 ACTCTGAAGAAGTGAGTAGCATCG-AATGGGAGTTTATCAGTATGACCGAACAAGAAGAA 382
|||| ||||||||| |||| || | ||||||||||||||| |||||||||||||||||||
Sbjct 168 ACTCCGAAGAAGTGTGTAGTAT-GAAATGGGAGTTTATCAATATGACCGAACAAGAAGAA 226
Query 383 GATCTCATCTCTCGAATGTACAGACTTGTCGGTAATAGGTGGGATTTAATAGCAGGAAGA 442
|||||||||| | |||||||||||||||| ||| | |||||||||||||||||| |||||
Sbjct 227 GATCTCATCTTTAGAATGTACAGACTTGTTGGTGACAGGTGGGATTTAATAGCAAGAAGA 286
Query 443 GTCGTAGGAAGAAAGGCAAATG-AGATTGAGAGATACTGGATTATGAGAAACTCTGACTA 501
|| || ||| | |||||| || |||| |||||||| |||||||||||||||||||| |
Sbjct 287 GTGGTGGGACGTGAGGCAA-TGGAGATAGAGAGATATTGGATTATGAGAAACTCTGAGTC 345
Query 502 TTTTTCTCACAAACGACG 519
||| || |||||| ||||
Sbjct 346 TTTCTCCCACAAATGACG 363
> Ahg357563 jgi|Araly1|357563|fgenesh1_pg.C_scaffold_8001350
Length=321
Score = 204 bits (110), Expect = 8e-52
Identities = 155/176 (88%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 321 ATGACTCTGAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAAG 380
|||||||||||||||| || || ||||||||||||||||||| ||| | ||||||||||
Sbjct 53 ATGACTCTGAAGAAGTTAGCAGTATCGAATGGGAGTTTATCAACATGTCTGAACAAGAAG 112
Query 381 AAGATCTCATC-TCTCGAATGTACAGACTTGTCGGTAATAGGTGGGATTTAATAGCAGGA 439
||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 113 AAGATCTCATCTTC-CGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGA 171
Query 440 AGAGT-CGTAGGAAGA-AAGGCAAATGAGATTGAGAGATACTGGATTATGAGAAAC 493
||||| | | |||||| || || | ||||| |||||||| ||||| |||||||||
Sbjct 172 AGAGTTCCT-GGAAGACAAC-CAGAGGAGATAGAGAGATATTGGATAATGAGAAAC 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25580477307
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5