BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30420.1 Length=696 Score E Sequences producing significant alignments: (Bits) Value Ahg933542 jgi|Araly1|933542|scaffold_401530.1 418 3e-116 Ahg888011 jgi|Araly1|888011|Al_scaffold_0136_3 405 2e-112 Ahg933543 jgi|Araly1|933543|scaffold_401531.1 248 4e-65 Ahg481955 jgi|Araly1|481955|fgenesh2_kg.4__1015__AT2G30432.1 219 3e-56 Ahg357563 jgi|Araly1|357563|fgenesh1_pg.C_scaffold_8001350 204 8e-52 > Ahg933542 jgi|Araly1|933542|scaffold_401530.1 Length=351 Score = 418 bits (226), Expect = 3e-116 Identities = 300/334 (90%), Gaps = 12/334 (4%) Strand=Plus/Plus Query 227 TTCTTCTA-TTTTC-CAGTAGTTATGGATAATACCAACCGTCTTCGTCTTCGTCGCGGTC 284 ||||| || ||| | |||||||||||||||||||||| | |||||||||||||||| Sbjct 3 TTCTTATACTTTCCACAGTAGTTATGGATAATACCAA----C--CGTCTTCGTCGCGGTC 56 Query 285 CCAGTCTTAGGCAAACTAAGTTCACTCGATCCCGATATGACTCTGAAGAAGTGAGTAGCA 344 |||| |||||||||| ||||||||| |||| ||| ||||||| |||||||||||||||| Sbjct 57 GCAGTTTTAGGCAAACCAAGTTCACTAGATCGCGACATGACTCCGAAGAAGTGAGTAGCA 116 Query 345 TCGAATGGGAGTTTATCAGTATGACCGAACAAGAAGAAGATCTCATCTCTCGAATGTACA 404 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 117 TCGAATGGGAGTTTATCAGTATGACCGAACAAGAGGAAGATCTCATCTCTCGAATGCACA 176 Query 405 GACTTGTCGGTAATAGGTGGGATTTAATAGCAGGAAGAGTCGTAGGAAGAAAGGCAAATG 464 ||||||||||| |||||||||||||||||||||||||||| || ||| |||||||||||| Sbjct 177 GACTTGTCGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGGTCGGACGAAAGGCAAATG 236 Query 465 AGATTGAGAGATACTGGATTATGAGAAACTCTGACTATTTT-TCTCACAAACGACGACGT 523 |||||||||||| |||||||||||||||||||||| |||| || ||||||||||||| Sbjct 237 AGATTGAGAGATTTTGGATTATGAGAAACTCTGACT-TTTTCTCCCACAAACGACGACA- 294 Query 524 CTT-AATAATTCTCCCtttttttCTACTTCTCCT 556 ||| || |||||||||||||||||| || ||||| Sbjct 295 CTTTAACAATTCTCCCTTTTTTTCTTCTCCTCCT 328 > Ahg888011 jgi|Araly1|888011|Al_scaffold_0136_3 Length=306 Score = 405 bits (219), Expect = 2e-112 Identities = 267/290 (92%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 269 CGTCTTCGTCGCGGTCCCAGTCTTAGGCAAACTAAGTTCACTCGATCCCGATATGACTCT 328 |||||||||||||||| |||| |||||||||| ||||||||| |||| ||| ||||||| Sbjct 16 CGTCTTCGTCGCGGTCGCAGTTTTAGGCAAACCAAGTTCACTAGATCGCGACATGACTCC 75 Query 329 GAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAAGAAGATCTC 388 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 76 GAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAGGAAGATCTC 135 Query 389 ATCTCTCGAATGTACAGACTTGTCGGTAATAGGTGGGATTTAATAGCAGGAAGAGTCGTA 448 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 136 ATCTCTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGGTC 195 Query 449 GGAAGAAAGGCAAATGAGATTGAGAGATACTGGATTATGAGAAACTCTGACTATTTT-TC 507 ||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| || Sbjct 196 GGACGAAAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAACTCTGACT-TTTTCTC 254 Query 508 TCACAAACGACGACGTCTT-AATAATTCTCCCtttttttCTACTTCTCCT 556 ||||||||||||| ||| || |||||||||||||||||| || ||||| Sbjct 255 CCACAAACGACGACA-CTTTAACAATTCTCCCTTTTTTTCTTCTCCTCCT 303 > Ahg933543 jgi|Araly1|933543|scaffold_401531.1 Length=348 Score = 248 bits (134), Expect = 4e-65 Identities = 230/274 (84%), Gaps = 16/274 (6%) Strand=Plus/Plus Query 248 ATGGATAATACCAACCGTCTTCGTCTTCGTCGCGGTCCCAGTCTTAGGCAAACTAAGTTC 307 |||||||| |||||||||||||| || || | || ||||| || |||||| |||||| Sbjct 23 ATGGATAACACCAACCGTCTTCG---TC-TC-C-TTCGCAGTCCTAAGCAAACCAAGTTC 76 Query 308 ACTCGATCCCGATATGACTCTGAAGAAGTGAGTAGCATCG-AATGGGAGTTTATCAGTAT 366 |||| | || |||||| ||||| || ||||| | | |||||||||||| || ||| Sbjct 77 ACTC--T-ACG---TGACTCCGAAGAGGTAAGTAGTGT-GAAATGGGAGTTTACCAATAT 129 Query 367 GACCGAACAAGAAGAAGATCTCATCTCTCGAATGTACAGACTTGTCGGTAATAGGTGGGA 426 ||| |||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||| Sbjct 130 GACGGAACAAGAAGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGA 189 Query 427 TTTAATAGCAGGAAGAGTCGTAGGAAGAAAGGCAAATGAGATTGAGAGATACTGGATTAT 486 |||||||||||||||||| |||||| || ||||||| || || ||||||||||||||||| Sbjct 190 TTTAATAGCAGGAAGAGTGGTAGGACGAGAGGCAAAAGACATAGAGAGATACTGGATTAT 249 Query 487 GAGAAACTCTGACTATTTTTCTCA-CAAACGACG 519 |||||||| |||| ||| ||| || ||||||||| Sbjct 250 GAGAAACTGTGACCATTGTTC-CAACAAACGACG 282 > Ahg481955 jgi|Araly1|481955|fgenesh2_kg.4__1015__AT2G30432.1 Length=440 Score = 219 bits (118), Expect = 3e-56 Identities = 172/198 (87%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 324 ACTCTGAAGAAGTGAGTAGCATCG-AATGGGAGTTTATCAGTATGACCGAACAAGAAGAA 382 |||| ||||||||| |||| || | ||||||||||||||| ||||||||||||||||||| Sbjct 168 ACTCCGAAGAAGTGTGTAGTAT-GAAATGGGAGTTTATCAATATGACCGAACAAGAAGAA 226 Query 383 GATCTCATCTCTCGAATGTACAGACTTGTCGGTAATAGGTGGGATTTAATAGCAGGAAGA 442 |||||||||| | |||||||||||||||| ||| | |||||||||||||||||| ||||| Sbjct 227 GATCTCATCTTTAGAATGTACAGACTTGTTGGTGACAGGTGGGATTTAATAGCAAGAAGA 286 Query 443 GTCGTAGGAAGAAAGGCAAATG-AGATTGAGAGATACTGGATTATGAGAAACTCTGACTA 501 || || ||| | |||||| || |||| |||||||| |||||||||||||||||||| | Sbjct 287 GTGGTGGGACGTGAGGCAA-TGGAGATAGAGAGATATTGGATTATGAGAAACTCTGAGTC 345 Query 502 TTTTTCTCACAAACGACG 519 ||| || |||||| |||| Sbjct 346 TTTCTCCCACAAATGACG 363 > Ahg357563 jgi|Araly1|357563|fgenesh1_pg.C_scaffold_8001350 Length=321 Score = 204 bits (110), Expect = 8e-52 Identities = 155/176 (88%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 321 ATGACTCTGAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAAG 380 |||||||||||||||| || || ||||||||||||||||||| ||| | |||||||||| Sbjct 53 ATGACTCTGAAGAAGTTAGCAGTATCGAATGGGAGTTTATCAACATGTCTGAACAAGAAG 112 Query 381 AAGATCTCATC-TCTCGAATGTACAGACTTGTCGGTAATAGGTGGGATTTAATAGCAGGA 439 ||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 113 AAGATCTCATCTTC-CGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGA 171 Query 440 AGAGT-CGTAGGAAGA-AAGGCAAATGAGATTGAGAGATACTGGATTATGAGAAAC 493 ||||| | | |||||| || || | ||||| |||||||| ||||| ||||||||| Sbjct 172 AGAGTTCCT-GGAAGACAAC-CAGAGGAGATAGAGAGATATTGGATAATGAGAAAC 225 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25580477307 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5