BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G30432.1

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481955 jgi|Araly1|481955|fgenesh2_kg.4__1015__AT2G30432.1         433    8e-121


> Ahg481955 jgi|Araly1|481955|fgenesh2_kg.4__1015__AT2G30432.1
Length=440

 Score =  433 bits (234),  Expect = 8e-121
 Identities = 267/283 (94%), Gaps = 2/283 (1%)
 Strand=Plus/Plus

Query  144  ATACTAATGGATAACACAAACCGTCTTCGCCGCCTTCACTGTCATAAACAACCCAAGTTC  203
            ||||||||||||||||||||||||||||||||||||||  ||| ||| ||||||||||||
Sbjct  101  ATACTAATGGATAACACAAACCGTCTTCGCCGCCTTCAGGGTCGTAAGCAACCCAAGTTC  160

Query  204  ACTCATAGCTCTC-AAGAAGTGAGTAGTATGAAATGGGAGTTTATCAATATGACCGAACA  262
            ||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  161  ACTCATAACTC-CGAAGAAGTGTGTAGTATGAAATGGGAGTTTATCAATATGACCGAACA  219

Query  263  AGAAGAAGATCTCATCTTTAGAATGTACAGACTTGTTGGCGACAGGTGGGATTTAATAGC  322
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  220  AGAAGAAGATCTCATCTTTAGAATGTACAGACTTGTTGGTGACAGGTGGGATTTAATAGC  279

Query  323  AAGAAGAGTGGTGGGACGTGAGGCAAAGGAGATAGAGAGATACTGGATTATGAGAAATTG  382
            |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | 
Sbjct  280  AAGAAGAGTGGTGGGACGTGAGGCAATGGAGATAGAGAGATATTGGATTATGAGAAACTC  339

Query  383  TGACTATTTCTCCCACAAATGACGCAAAAGTCACTCTCTTTAA  425
            ||| | |||||||||||||||||||||| ||||||||||||||
Sbjct  340  TGAGTCTTTCTCCCACAAATGACGCAAACGTCACTCTCTTTAA  382


 Score =  117 bits (63),  Expect = 9e-26
 Identities = 72/76 (95%), Gaps = 1/76 (1%)
 Strand=Plus/Plus

Query  4   AGAGTTGGGGACCTCTCTTTGTGTCTCTACATAGTTTTGTAAACCTCACATCTCTTTCTT  63
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct  1   AGAGTTGGGGACCTCTCTTTGTGTCTCTACATAGTTTTGTAA-CCTCACATCTTTTTCTT  59

Query  64  CGCTTGCATTCTCCAA  79
           | || |||||||||||
Sbjct  60  CCCTAGCATTCTCCAA  75



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20146150992


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5