BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30440.1
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481956 jgi|Araly1|481956|fgenesh2_kg.4__1016__AT2G30440.1 2209 0.0
> Ahg481956 jgi|Araly1|481956|fgenesh2_kg.4__1016__AT2G30440.1
Length=1598
Score = 2209 bits (1196), Expect = 0.0
Identities = 1473/1601 (92%), Gaps = 41/1601 (3%)
Strand=Plus/Plus
Query 39 TTTCCTTTGATTGCACAACTAATCTCAAACTAAAAGATCTTCTCTTTAGGCA-TACCCAG 97
||||||||||||||| ||||||||||||||| |||||||| | ||||||| | | ||||
Sbjct 1 TTTCCTTTGATTGCAAAACTAATCTCAAACTCAAAGATCTGCCCTTTAGGGATTTTCCAG 60
Query 98 ATCTTTCTCTCTCTAAAGTCTCCACCTTTCACGGT-TTTTTGCTTCTCACCTGAATCCAA 156
||||||||||||||||||||||||||||| || | |||| ||||||||||||||||||
Sbjct 61 ATCTTTCTCTCTCTAAAGTCTCCACCTTTAAC--TCGTTTT-CTTCTCACCTGAATCCAA 117
Query 157 TCAATCTCGCCGGAGTGAATTCACCTTCCTCCGGTTGACTCGTCGGACTTAGTCCGACCT 216
||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||| ||
Sbjct 118 TCAATCTCGCCGGAGAGAATTCACCTTCTTCCAATTGACTCGTCGGACATAGTCCGAACT 177
Query 217 TTCAATTCGTAGATTCTGTTTACAATTCACTGATCGTTTGATTAGAAATGGGTTACTTGT 276
||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 178 CTCAATTCGTCGATTCTGTTTTCAATTCACTGATCGATTGATTAGAAATGGGTTACTTGT 237
Query 277 TCTTCTAAGTCTCTCTTTAGCTGAAAGTTTGTTGCTTTACGACTCTTCGATTTACCCTTA 336
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 238 TCTTCTGAGTCTCTCTTTAGCTGAAAGTTTGTTGCTTTACGACACTTCGATTTACCCTTA 297
Query 337 CTTGTTCAAGTTCTTCATCAAATTCGTAGTTATGGCGATAAGAATCACTTTCACTTACTC 396
|||||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||| ||
Sbjct 298 CTTGTTCAAGTTCTTCTTCAAATTCGTATTTATGGCGATTAGAATTACTTTCACTTATTC 357
Query 397 CACCCATGTTGCTCGGAATCTCGTCGGGACCCGT---GTTGGTCCCGGT-GGTTACTGCT 452
||| ||||||||||||||||||||||||| |||| | ||| | ||| |||||
Sbjct 358 CACTCATGTTGCTCGGAATCTCGTCGGGATCCGTCCCGGCGGT-GATCTCCGTTGCTGCT 416
Query 453 TTGAATCCTTGGTTCGTCCTAGATTCTTCTCCCACAAGCGTGATTTCGATAGATCTCCTC 512
|||| |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct 417 TTGAGTCCTTGGTTCGTCCTAGATTCTTCACCCACAAGCGTGATTTTGATAAATCTCCTC 476
Query 513 GGAATCGACCTGCATCGATGTATGGTAGCATCGCGAGGGAGCTCATCGGAGAAGGAAGTC 572
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGAATCGACCTCCATCGATGTATGGTAGCATCGCGAGGGAGCTCATCGGAGAAGGAAGTC 536
Query 573 AAAGCCCGCTTGTGATGGGTTTGATCTCGATATTGAAGTCAACGACGGGTCATGAGTCGT 632
||||||||||||||||||||||||||||||| |||||||||||| ||| |||||| ||||
Sbjct 537 AAAGCCCGCTTGTGATGGGTTTGATCTCGATCTTGAAGTCAACGTCGGCTCATGAATCGT 596
Query 633 CAACGA---TGAATGTTCTGGGGGTTTCATCTTTCAAGGCTTCTTCTATTATTCCGTTTC 689
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CAACGACGATGAATGTTCTGGGGGTTTCATCTTTCAAGGCTTCTTCTATTATTCCGTTTC 656
Query 690 TTCAAGGGTCGAAATGGATTAAGAATCCACCGGT-GATTGATGACGTGGATAAAGGAGGA 748
||||||||||||||||||| |||||||| |||| | |||||||||||||||||||||||
Sbjct 657 TTCAAGGGTCGAAATGGATGAAGAATCCGCCGGAAG-TTGATGACGTGGATAAAGGAGGA 715
Query 749 ACAGTT-TGTGATGATGATGATGATAAGGAATCGAGGAATGGAGGAAGTGGATGGGTTAA 807
|| ||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 716 AC-GTTGTGTGATGATGATGAGGATAAGGAATCGAGGAGTGGAGGAAGTGGATGGGTTAA 774
Query 808 TAAGCTTTTGAGTGTTTGTTCTGAGGATGCTAAGGCTGCTTTCACGGCGGTTACTGTTTC 867
||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 775 TAAGCTTTTGAATATTTGTTCTGAGGATGCAAAGGCTGCTTTCACGGCGGTTACTGTTTC 834
Query 868 TATCCTTTTTAGATCAGCTCTTGCGGAGCCAAAGTCGATTCCTTCAACGTCTATGTACCC 927
||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 835 TATCCTTTTCCGATCGGCTCTTGCGGAGCCAAAGTCGATTCCTTCCACGTCTATGTACCC 894
Query 928 TACCTTGGACAAGGGTGATCGCGTTATGGCGGAGAAGGTCTCATACTTTTTCAGGAAGCC 987
||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 895 TACCTTGGATGTCGGTGACCGCGTTATGGCGGAGAAGGTCTCGTACTTTTTCAGGAAGCC 954
Query 988 AGAGGTTTCAGATATAGTAATCTTCAAGGCTCCTCCAATTTTGCTGGAATATCCGGAATA 1047
|||||||||||||||||| |||||||||||||||||||| ||||| |||||| | | |
Sbjct 955 AGAGGTTTCAGATATAGTGATCTTCAAGGCTCCTCCAATCTTGCTTGAATAT--G-A-T- 1009
Query 1048 TGGCTACAGTTCCAATGATGTATTCATAAAAAGGATAGTGGCAAGTGAAGGTGACTGGGT 1107
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1010 T----ACAGTTCCAATGATGTATTCATAAAGAGGATAGTGGCAAGTGAAGGTGACTGGGT 1065
Query 1108 TGAAGTTCGTGATGGGAAGCTCTTTGTGAATGACATTGTGCAAGAAGAAGATTTTGTCTT 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TGAAGTTCGTGATGGGAAGCTCTTTGTGAATGACATTGTGCAAGAAGAAGATTTTGTCTT 1125
Query 1168 AGAACCAATGTCATATGAAATGGAACCAATGTTTGTCCCCAAAGGTTATGTCTTTGTCCT 1227
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 AGAGCCAATGTCATATGAAATGGAACCAATGTTTGTCCCCAAAGGTTATGTCTTTGTCCT 1185
Query 1228 TGGTGATAACCGCAACAAAAGCTTTGACTCTCATAACTGGGGTCCACTTCCAATAGAGAA 1287
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1186 TGGTGACAACCGCAACAAAAGCTTCGACTCTCATAACTGGGGTCCACTTCCAATAGAGAA 1245
Query 1288 CATCGTTGGAAGATCTGTGTTCCGGTACTGGCCACCGAGCAAAGTATCAGACACCATATA 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CATCGTTGGAAGATCTGTGTTCCGGTACTGGCCACCGAGCAAAGTATCAGACACCATATA 1305
Query 1348 CCACGACCAAGCTATCACAAGGGGACCTGTTGCAGTTTCATGACAAAAGAAAGTTGGATT 1407
|||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1306 CCACGACCAAGCTATCCCAAAGGGACCTGTTGCAGTTTCATGACAAAATAAAGTTGGATG 1365
Query 1408 TTTCTTAGGATTAAAGCACAAGATTGTGCAAAACCAGTCTGGTCAGAATTGGGTAGACTT 1467
|| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1366 CTTATTAGAATTAAAGCACAAGATTGTGCAAAACCAGTCTGGTCAGAATTGGGCAGACTT 1425
Query 1468 GGAATTGAAACTCA-AAACCGTTATGATATCTGCAGATACATACTGTATCATCGTTATGG 1526
|| |||||||||| ||| |||||||||||||| ||||||||||||||| | |
Sbjct 1426 GGGATTGAAACTCGGAAA--GTTATGATATCTGCGGATACATACTGTATC---G--A--- 1475
Query 1527 ATCGCATCTGGTTCTTAGCTGATGGTCGGGAAGCCGGAGATGTTACGTGTACAAAAGGAA 1586
| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1476 --C--ATCTGGTTCTTAGCTGATGGTGGGGAAGCCGGAGAAGTTACGTGTACAAAAGGAA 1531
Query 1587 TGGAAGATGCAAAGAAAAGGAAACGATTTACTGTGATTGTT 1627
||||||||||| |||||| ||| |||||||||||||||||
Sbjct 1532 TGGAAGATGCAGAGAAAATAAAAGGATTTACTGTGATTGTT 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69857509330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5