BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30460.1
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320800 jgi|Araly1|320800|fgenesh1_pm.C_scaffold_4000857 1718 0.0
Ahg470711 jgi|Araly1|470711|fgenesh2_kg.1__665__AT1G06890.1 1192 0.0
> Ahg320800 jgi|Araly1|320800|fgenesh1_pm.C_scaffold_4000857
Length=1062
Score = 1718 bits (930), Expect = 0.0
Identities = 1021/1065 (96%), Gaps = 6/1065 (1%)
Strand=Plus/Plus
Query 107 ATGAGCGATG-CCCAGAAGTTCCAGCTTGGAACAATCGGCGCTTTGAGTTTATCCGTTGT 165
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCGA-GAGCCACAAGTTCCAGCTTGGAACAATCGGCGCTTTGAGTTTATCCGTTGT 59
Query 166 GTCCTCTGTTTCGATCGTGATCTGTAACAAGGCCCTTATTAGCACCCTTGGTTTCACATT 225
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 60 GTCCTCTGTTTCGATCGTGATCTGTAACAAGGCCCTTATCAGCACTCTTGGTTTCACATT 119
Query 226 TGCAACTACTTTGACAAGCTGGCATCTTTTGGTGACATTTTGTTCACTTCATGTGGCATT 285
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 TGCAACTACTTTGACAAGCTGGCATCTTTTGGTCACATTTTGTTCACTTCATGTGGCATT 179
Query 286 ATGGATGAAGTTTTTTGAGCACAAGCCTTTTGATCCACGAGCTGTCCTGGGATTTGGTGT 345
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 180 ATGGATGAAGTTTTTTGAGCACCAGCCTTTTGATCCACGAGCTGTCTTGGGATTTGGTGT 239
Query 346 ATTAAATGGTATATCCATTGGATTATTAAATCTCAGCTTGGGTTTTAATTCTGTTGGTTT 405
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 ATTAAATGGTATATCCATTGGATTATTGAATCTCAGCTTGGGTTTTAATTCTGTTGGTTT 299
Query 406 TTACCAGATGACAAAACTTGCAATCATCCCCTGTACTGTTGTCTTAGAGACCATCTTCTT 465
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTACCAGATGACAAAACTAGCAATCATCCCCTGTACTGTTGTCTTAGAGACCATCTTCTT 359
Query 466 CAGAAAGATGTTCAGTCGAAAAATCCAGTTTTCATTAGTCATCCTTCTCCTTGGTGTTGG 525
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAGAAAGAAGTTCAGTCGAAAAATCCAGTTTTCATTAGTCATCCTTCTCCTTGGTGTTGG 419
Query 526 AATTGCAACCGTAACAGATCTCCAGCTTAATATGCTGGGTTCTGTCTTGTCGCTACTGGC 585
|||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 420 AATTGCAACCGTTACAGATCTTCAGCTTAATATGATGGGTTCTGTCTTGTCGCTGCTGGC 479
Query 586 TGTTATCACAACTTGTGTTGCCCAAATTATGACCAATACGATCCAGAAGAAATATAAGGT 645
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 TGTTATCACAACTTGTGTTGCCCAAATTATGACCAATACGATCCAGAAGAAATACAAGGT 539
Query 646 TTCATCCACCCAACTTCTGTATCAGTCTTGCCCATATCAAGCAATCACACTTTTTGTTAC 705
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 TTCATCTACCCAACTTCTGTATCAGTCTTGCCCATATCAAGCAATCACTCTTTTTGTTAC 599
Query 706 TGGCCCATTTTTAGATGGTCTCTTAACCAACCAGAACGTGTTTGCTTTCAAATACACGTC 765
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 600 AGGCCCATTTTTAGATGGTCTGTTAACCAACCAGAACGTGTTTGCTTTCAAGTACACGTC 659
Query 766 TCAAGTTGTGTTCTTCATCG-TCTTGTCCTGCCTCATATCTGTTTCAGTAAACTTCAGCA 824
|||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct 660 TCAAGTTGTGTTCTTCATCGTTC-TGTCCTGCCTGATATCTGTTTCAGTAAACTTCAGCA 718
Query 825 CGTTTCTCGTCATTGGAAAGACATCTCCTGTCACTTATCAGGTTCTAGGACATCTAAAAA 884
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 CGTTTCTCGTCATTGGAAAGACATCTCCAGTCACTTATCAGGTTCTAGGACATCTAAAAA 778
Query 885 CATGCTTAGTGTTAGCATTTGGGTATCTTTTGCTGAAAGACGCATTCAGCTGGCGCAACA 944
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CATGCCTAGTGTTAGCATTTGGGTATCTTTTGCTGAAAGACGCATTCAGCTGGCGCAACA 838
Query 945 TTCTTGGTATTCTTGTCGCCGTGATTGGAATGGTGCTTTATTCCTATTACTGCACACTCG 1004
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 TTCTTGGTATTCTTGTCGCCGTGATTGGAATGGTGCTTTATTCCTACTACTGCACACTCG 898
Query 1005 AAACCCAACAGAAGGCCACAGAAACATCAACTCAATTGCCTCAGATGGATGAAAACGAGA 1064
|||||||||| ||||| | ||||||||||| |||||||| |||||||||||||||||||
Sbjct 899 AAACCCAACAAAAGGCTGCTGAAACATCAACCCAATTGCCCCAGATGGATGAAAACGAGA 958
Query 1065 AAGATCCGCTAGTTAGTGCGGAAAACGGGAGCGGATTGATATCAGACAATGGAGTGCAAA 1124
| ||||||||| | |||| |||||||||||||||||||||||||||||||| ||| | ||
Sbjct 959 AGGATCCGCTAATAAGTGTGGAAAACGGGAGCGGATTGATATCAGACAATGTAGTTCCAA 1018
Query 1125 AG-CAGGATCCTGTATGGAATTCAAACAAAGATTTTCAAGCGTAG 1168
|| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1019 AGAC-GGATCCTGTATGGAACTCAAACAAAGATTTTCAAGCGTAG 1062
> Ahg470711 jgi|Araly1|470711|fgenesh2_kg.1__665__AT1G06890.1
Length=1487
Score = 1192 bits (645), Expect = 0.0
Identities = 950/1095 (87%), Gaps = 30/1095 (3%)
Strand=Plus/Plus
Query 99 GAGCAAATATGAGCGATGCCCAGAAGTTCCAGCTT-GGAACAATCGGCGCTTTGAGTTTA 157
|||| || |||||||| | ||||||||||||| || |||||||||||||||||||||||
Sbjct 261 GAGCGAAGATGAGCGAGGGCCAGAAGTTCCAG-TTGGGAACAATCGGCGCTTTGAGTTTG 319
Query 158 TCCGTTGTGTCCTCTGTTTCGATCGTGATCTGTAACAAGGCCCTTATTAGCACCCTTGGT 217
||||||||||| ||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 320 TCCGTTGTGTCGTCTGTCTCCATCGTGATCTGTAACAAAGCACTTATTAGCACCCTTGGC 379
Query 218 TTCACATTTGCAACTACTTTGACAAGCTGGCATCTTTTGGTGACATTTTGTTCACTTCAT 277
|||||||| || |||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 380 TTCACATTCGCGACTACTTTGACAAGTTGGCATCTTTTGGTCACATTTTGTTCCCTTCAT 439
Query 278 GTGGCATTATGGATGAAGTTTTTTGAGCACAAGCCTTTTGATCCACGAGCTGTCCTGGGA 337
|||||||||||||||||| | || || |||||||||||||||||||||||||| |||||
Sbjct 440 GTGGCATTATGGATGAAGATGTTCGAACACAAGCCTTTTGATCCACGAGCTGTGATGGGA 499
Query 338 TTTGGTGTATTAAATGGTATATCCATTGGATTATTAAATCTCAGCTTGGGTTTTAATTCT 397
||||| |||| ||||| |||||||| ||| |||| || |||||| |||| |||||||||
Sbjct 500 TTTGGCATATTGAATGGGATATCCATAGGACTATTGAACCTCAGCCTGGGCTTTAATTCT 559
Query 398 GTTGGTTTTTACCAGATGACAAAACTTGCAATCATCCCCTGTACTGTTGTCTTAGAGACC 457
|| ||||||||||||||||||||||| |||||||||||||| |||||| |||| ||||||
Sbjct 560 GTCGGTTTTTACCAGATGACAAAACTAGCAATCATCCCCTGCACTGTTCTCTTGGAGACC 619
Query 458 ATCTTCTTCA-GAAAGATGTTCAGTCGAAAAATCCAGTTTTCATTAGTCATCCTTCTCCT 516
||||||||| |||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct 620 CTCTTCTTCAGGAAA-AAGTTCAGTCGAAAAATCCAGTTTTCATTAACCATCCTTCTCCT 678
Query 517 TGGTGTTGGAATTGCAACCGTAACAGATCTCCAGCTTAATATGCTGGGTTCTGTCTTGTC 576
||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 679 TGGTGTTGGAATTGCAACCGTCACAGATCTTCAACTTAATATGCTGGGTTCAGTCTTGTC 738
Query 577 GCTACTGGCTGTTATCACAACTTGTGTTGCCCAAATTATGACCAATACGATCCAGAAGAA 636
||| ||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 739 GCTGCTGGCTGTTGTCACAACTTGTGTTGCTCAAATTATGACAAATACTATCCAGAAGAA 798
Query 637 ATAT-AAGGTTTCATCCACCCAACTTCTGTATCAGTCTTGCCCATATCAAGCAATCACAC 695
| | || ||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 799 GT-TCAAAGTTTCATCCACGCAACTTCTGTATCAGTCTTGCCCGTATCAAGCAATCACTC 857
Query 696 TTTTTGTTACTGGCCCATTTTTAGATGGTCTCTTAACCAACCAGAACGTGTTTGCTTTCA 755
|||| || ||||| |||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct 858 TTTTCGTCACTGGGCCATTTTTAGATGGGCTCCTAACCAATCAGAACGTGTTTGCTTTCA 917
Query 756 AATACACGTCTCAAGTTGTGTTCTTCATCGTCTTGTCCTGCCTCATATCTGTTTCAGTAA 815
| ||||| |||||||| ||||||||||||||| |||||||||||||||| || || ||||
Sbjct 918 AGTACACTTCTCAAGTAGTGTTCTTCATCGTCCTGTCCTGCCTCATATCAGTCTCTGTAA 977
Query 816 ACTTCAGCACGTTTCTCGTCATTGGAAAGACATCTCCTGTCACTTATCAGGTTCTAGGAC 875
|||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 978 ACTTCAGCACATTTCTTGTCATTGGAAAAACATCTCCTGTCACATATCAGGTTCTGGGAC 1037
Query 876 ATCTAAAAACATGCTTAGTGT-TAGCATTTGGGTATCTTTTGCTGAAAGACGCATTC-AG 933
|||| ||||||||| | || | |||||||||| ||| | |||||| |||| ||||| |
Sbjct 1038 ATCTCAAAACATGCCTGGT-TCTAGCATTTGGCTATGTGTTGCTGCGAGACCCATTCGA- 1095
Query 934 CTGGCGCAACATTCTTGGTATTCTTGTCGCCGTGATTGGAATGGT-GCTTTATTCCTATT 992
||||||||||||||| |||||||| || || |||||||||||||| | ||||||||||||
Sbjct 1096 CTGGCGCAACATTCTCGGTATTCTGGTGGCTGTGATTGGAATGGTTG-TTTATTCCTATT 1154
Query 993 ACTGCAC-ACTCGAAACCCAACAGAAGGCCA-CAGAAACATCAACTCAATTGCCTCAGAT 1050
||||| | | | || || || |||||||| | | ||||| |||||||| |||||||||||
Sbjct 1155 ACTGCTCGATT-GAGACTCAGCAGAAGGCAAGC-GAAACCTCAACTCAGTTGCCTCAGAT 1212
Query 1051 GGATGAAAACGAGAAAGATCCGCTAGTTAGT-GCGGAAAACGGGAGCGGATTGATATCAG 1109
| | || | |||||| ||||||||| | || || ||||| || |||||| || ||||||
Sbjct 1213 GAAAGAGAGCGAGAACGATCCGCTAAT-AGCAGCTGAAAATGGAAGCGGAGTGTTATCAG 1271
Query 1110 ACAATGGAG------TGC---AAAAG-CAG-GA-TCCTGTATGGAATTCAAACAAAGATT 1157
| ||||| ||| ||||| | | | |||||||||||| ||||| |||||||
Sbjct 1272 ATGGTGGAGGGGGAGTGCCGCAAAAGACGGTGGCTCCTGTATGGAACTCAAATAAAGATT 1331
Query 1158 TTCAAGCGTAGAGCT 1172
||||||| || ||||
Sbjct 1332 TTCAAGCCTAAAGCT 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55040404025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5