BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30480.3
Length=3041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320802 jgi|Araly1|320802|fgenesh1_pm.C_scaffold_4000859 3203 0.0
> Ahg320802 jgi|Araly1|320802|fgenesh1_pm.C_scaffold_4000859
Length=2106
Score = 3203 bits (1734), Expect = 0.0
Identities = 1998/2124 (94%), Gaps = 24/2124 (1%)
Strand=Plus/Plus
Query 474 ATGCTGCAATGGATGGGAGGATCGAGGCGGAAAGTAGCCGCTTCACACACGTCAGTGAAG 533
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGCTGCAATGGATGGGAGGATCGAGGCGGAAAGTGGCCGCTTCACACACGTCAGTGAAG 60
Query 534 AAGAGGCAAAAACAATATTTTGAGCAGAGGAGACAGCAACAGCATCAGTTCACAGTTGGG 593
||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AAGAGGCAAAAGCAATACTTTGAGCAGAGGAGACAGCAACAGCATCAGCTCACAGTTGGG 120
Query 594 TCTGAGAGCTGTAGTAATGATATAAACAATAGTAATCAACACTTAAGAGAACACCAATCT 653
||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 121 TCTGAGAGCTGTACTAATGATATAAACAATAGTAACCAACACTCAAGAGAACACCAATCT 180
Query 654 CTGGATATTCTCAATTTGCTGAATTTGTCAACCGCTACTCCTGAATGCAAACCTTCTGGT 713
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||
Sbjct 181 CTGGATATTCTCAATTTGCTGAACTTGTCAACCGCTACTCCTGAATGCAAACTTTCTTGT 240
Query 714 CCAGAAAATGGAATGCAAGATCTGGATGCTGATTTTTACAGCCTTAAGGACAACATGTCC 773
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 241 CCAGAAAATGGAATGCAAGATCTGGATGCTGATTTCTACAGCCTGAAGGACAACATTTCC 300
Query 774 GGAGTAGGAAGTTCATTTAACCATATAGCAGAACCTACTTCCTCTAAGAGGACTTTGTTT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAGTAGGAAGTTCATTTAACCATATAGCAGAACCTACTTCCTCTAAGAGGACTTTGTTT 360
Query 834 AGTATCCCTGACAACCAGACAAATGATTTCAAGAAAGCAAACACTGACAACCAGACAAAT 893
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 AGTCTCCCTGACAACCAGACAAATGACTTCAAGAAAGCAAACACTGACAACCAGACAAAT 420
Query 894 GATTTCAAGAAAACAAACACCACCGCAGATCTGATGGATGGCACTGAGCGGAAGTTATCT 953
|||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 421 GATTTCAAGAAAGCAAACACCACAGCAGATCTGATGGATGGCACAGAGCGGAAGTTATCT 480
Query 954 GTCTTTGATTTGGTTGGTGATGATCATACAACAACCAACCTGGAAGAATGTTCTCCGTCT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTCTTTGATTTGGTTGGTGATGATCATACAACAACCAACCTGGAAGAATGTTCTCCGTCT 540
Query 1014 GAGGCTCACATGGCATTTTCAGTCGAAGGATTAGGTAAAATAAACACGGAAACTCCAGTT 1073
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGGCCCACATGGCCTTTTCAGTTGAAGGATTAGGTAAAATAAACACGGAAACTCCAGTT 600
Query 1074 AATTCCCCACAACCATCAGACAGAACTTTTGTGTACCGGTGCTCCTCTCCATGGAAGGAT 1133
||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 601 AATTCTCCACAACCATCAGACAGAACCTTTGTGTACCGGTGCTCCTCTCCATGGATGG-T 659
Query 1134 -ACTGGTCAACCAGATACATCACATGTCAGGGGAAGGCTCAACGACTTTGAGAACGAAGT 1192
| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 AAATGGTCAACCAAATACATCACATGTCAGGGAAAGGCTCAACGACTTTGAGAACGAAGT 719
Query 1193 GGACACAATGATTCAAAGTAGCAAAATGTTCCAAGATGACAGCCTTTATAGGTCTCCAAT 1252
||||||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 720 GGACACAATAATTGAAAGTAGCAAAATCTTCCAAGATGACAGCCGTTATAGGTCTCCAAT 779
Query 1253 TGGCATACATGCTAAAGATGGGGGCAGAAAGCAAAAACTGCAAACTTTCAGTGATCACTT 1312
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 TGGCATACATGCTAAAGATGGGGGCAGAAAGCAAAAACTGCAGACTTTCAGTGATCACTT 839
Query 1313 GCACAAACAATATAGCGACTCTAGAAATTACTTCTGTGACGTTGCAGATTTCAACAACAG 1372
||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||||||
Sbjct 840 GCACAAACAATATAGCGACTCAAGAAGTAACTTCTGCGACGTTGCAGATTTCAACAACAG 899
Query 1373 CAGGTTCTCTGACGATGAATGGAATGCTAAGCCCGCCTTTCTTGATGACGGGGAAGATAG 1432
|||||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 900 CAGGTTCTCTGATGACGAATGGAATGCTAAGTCCGCCTTTCTTGACGACGGGGAAGATAG 959
Query 1433 TTTTTACTGGAAGGCCGAACAGCCATGCCAAAAGGAGAGTTTGAACCCTGATTTCCTGAA 1492
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 TTTTTACTGGAAGGGCGAACAGCCATGCCAAAAGGAAAGTTTGAACCCTGATTTCCTGAA 1019
Query 1493 ATATTGCAATGATTGCACTGAGAGTCGCTCTTCTACAGAACACCATAGGAAAAAGAAGAG 1552
|||| | || |||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1020 ATATGGTAAGGATTACACTGAGAGTCGCTCTTCTTCAGAACACCATAGGAAAAAGAAGAG 1079
Query 1553 GGATTACCTGGAAACGACCTGGAGGTCCAACATTAGAGATTCACCAACTCGAAGATCACA 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGATTACCTGGAAACGACCTGGAGGTCCAACATTAGAGATTCACCAACTCGAAGATCACA 1139
Query 1613 TCTTTTAAAAAGGAATATCGATTATCCAAGTTTCGCAAAGGCAGCAACCTCCGACTTTGA 1672
||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||||||
Sbjct 1140 TCTTTTAGAAAGGAATATCGACCATCCAAGTTTCGCTAAGCCAGCAACCTCCGACTTTGA 1199
Query 1673 TTTTGACAATGTATTTGACCGACCGGTTTGGTCATCCATTGTACTTGAGGAAGATAAAGA 1732
|||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1200 TTTTAACAATGTATTTGACCAACCGGTTTGGTCATCCATTGTACCTGAGGAAGATAAAGA 1259
Query 1733 CAGCCATAGTTTGCGTAGCGAAGAATCTTGCTCGTCTAGTGCAGTTTGGACCAATGAAAC 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CAGCCATAGTTTGCGTAGCGAAGAATCTTGCTCGTCTAGTGCAGTTTGGACCAATGAAAC 1319
Query 1793 CCACAATTCACAGTTTGAGACCAACACAAGACAAAGGAAAAGGGAAACTAATAAGTTTAG 1852
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
Sbjct 1320 CCACAATTCACAGTTTGAGACCAACACAAGACAAAGAAAAAGGGAAACTAATTCGTTTCG 1379
Query 1853 CAACCTTGGAGACAAAAAGTATATCAATACTGACCTTTTCCAAGAATCGTGGGAAGACTG 1912
||||||||||||||| | ||| | |||| | |||||||||||||||| |||||||||||
Sbjct 1380 CAACCTTGGAGACAAGTATTATCTGAATAATAACCTTTTCCAAGAATCATGGGAAGACTG 1439
Query 1913 GGAAGTGGATGATCAACATATGAAGAGACAAGTTAGGTCTGGAAAGCAGGGCAGACTATC 1972
||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1440 GGATGTGGATGATCAACATATGAAGAGACAAGTTGGGTCTGGAAAGCAGGTCAGACTATC 1499
Query 1973 AAACTCAGGAAAGTTAAAATCTACCAGTCAGAGA-AAGGGTGGTCTAGACGCGTCTTACG 2031
|||| ||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 1500 AAACCCAGGAAAGTTAAAATCTACCAGTCAGAGAGAAGG-TGGTCTAGACGAGTCTTACA 1558
Query 2032 ATTGGTTTGGAGAAGGATTTACATCAGCAGGAATAAACTCAGAGATTACAAGTGAGAGGA 2091
||||||||| ||||||||| |||| ||||| ||||||||||| |||||||||||||||
Sbjct 1559 ATTGGTTTGCTGAAGGATTTTCATCTGCAGGCATAAACTCAGATATTACAAGTGAGAGGG 1618
Query 2092 ATAAGCCATATCCTTTCCTAAACCCTGAGCGTGGTTCCTCTCACTGGCGTTCATCTCGTG 2151
| ||||||||||||||||| ||| ||||| |||| ||| |||||||||||||||||||
Sbjct 1619 ACAAGCCATATCCTTTCCTTAACGCTGAGATTGGTAGCTCGCACTGGCGTTCATCTCGTG 1678
Query 2152 CCCCTGATTCTATTCCGGAAACATGGATTCCCAAGTTTTCAGTAGGAGGCACCGGAGATG 2211
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1679 CCCCTGATTCTATTCCGGAAACATGGGTTCCCAAGTTTTCAGTAGGAGGCACCGGAGATG 1738
Query 2212 ATGATGATGGTGACCACGATGAAGAGGACTATGTAAACTGTTTATCAGCAAACCATAAAT 2271
||||||||| | | || || ||||||||||||||||||||||||||||||||
Sbjct 1739 ATGATGATG---A--A-GACGA------CTATGTAAACTGTTTATCAGCAAACCATAAAT 1786
Query 2272 CTAAACTAGCAGGAGACACATGCGGTTTTGAGAATGACACGTTATCAGAGAACGATAATG 2331
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 CTAAACTAGCAGGAGGCACATGCGGTTTTGAGAATGACACGTTATCAGAGAACGATAATG 1846
Query 2332 AGCAAAGCAGAGAAGTAAATCACCCAAAAAATC-AGGGAGATGAGACCTCATCATCCATT 2390
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1847 AGCAAAGCAGAGAAGTAAATCACCCAAAAA-TCCAGGGAGATGAGACCTCATCATCCGTT 1905
Query 2391 GCAAAGAGCCTCTCAGACGAAAATGATGT-TGTTA-GATGTAACCCCAACAAGGAGGTCA 2448
|| ||||||||||||||||||||||| || ||| | ||| ||||||||||||||||||||
Sbjct 1906 GCTAAGAGCCTCTCAGACGAAAATGA-GTATGT-ACGATATAACCCCAACAAGGAGGTCA 1963
Query 2449 TGGAAGCTCGTCACCAAAG-AAACAGAGAATCAGGAGAAAAGACAAGTAGAGACCCGTTC 2507
|| |||||||||||||| | |||||||||||||||||||||||||||||||||| || ||
Sbjct 1964 TGCAAGCTCGTCACCAA-GTAAACAGAGAATCAGGAGAAAAGACAAGTAGAGACTCGCTC 2022
Query 2508 CAACAAATGATAATGCTGGAAAGACGCACACTTCAGCTCGTTTGTTTTAACAAGGCATTG 2567
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2023 CAACAAATGATAATGCTGGAAAGACGCACACTTCAGCTCGTTTGTTTTAAGAAAACATTG 2082
Query 2568 CTTCTTGACTCTTTAAAAACTTAG 2591
|| |||||||| ||||||||||||
Sbjct 2083 CTCCTTGACTCCTTAAAAACTTAG 2106
Score = 69.4 bits (37), Expect = 1e-10
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 841 CTGACAACCAGACAAATGATTTCAAGAAAGCAAACAC 877
|||||||||||||||||||||||||||||||||||||
Sbjct 404 CTGACAACCAGACAAATGATTTCAAGAAAGCAAACAC 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114842088675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5