BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30490.1
Length=1803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481961 jgi|Araly1|481961|fgenesh2_kg.4__1021__AT2G30490.1 2615 0.0
> Ahg481961 jgi|Araly1|481961|fgenesh2_kg.4__1021__AT2G30490.1
Length=1780
Score = 2615 bits (1416), Expect = 0.0
Identities = 1680/1805 (93%), Gaps = 28/1805 (2%)
Strand=Plus/Plus
Query 2 TCAGCAGCTTCTTCTGCTTTCAATTACTCTCGCCGACGATTTTCTCACCGGaaaaaaaCA 61
||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||
Sbjct 1 TCAGCAGCTTCTTCTGCTTTCAA-T-CACTCGCCGACGATTTTCTCACCGG--AAAAATT 56
Query 62 ATATCATTGCGGATACACAAACTATAATGGACCTCCTCTTGCTGGAGAAGTCTTTAATCG 121
| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 57 A-ATCATTGCGGATACACAAACTATAATGGACCTTCTCTTGTTGGAGAAGTCTTTAATCG 115
Query 122 CCGTCTTCGTGGCGGTGATTCTCGCCACGGTGATTTCAAAGCTCCGCGGCAAGAAATTGA 181
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CCGTCTTCGTGGCGGTGGTTCTCGCCACGGTGATTTCAAAGCTCCGCGGCAAGAAATTGA 175
Query 182 AGCTACCTCCAGGTCCTATACCAATTCCGATCTTCGGAAACTGGCTTCAAGTCGGAGATG 241
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 176 AGCTACCTCCAGGTCCTATGCCGATTCCGATCTTCGGAAACTGGCTTCAAGTCGGAGATG 235
Query 242 ATCTCAACCACCGTAATCTCGTCGATTACGCTAAGAAATTCGGCGATCTCTTCCTCCTCC 301
|||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 236 ATCTTAACCACCGTAATCTCATCGATTACGCTAAAAAATTTGGCGATCTCTTCCTCCTCA 295
Query 302 GTATGGGTCAGCGAAACCTAGTCGTCGTCTCCTCACCGGATCTAAC-AAAGGAAGTGCTC 360
| ||||||||||||||||||||||||||||| ||||||||||| || ||| ||||| |||
Sbjct 296 GGATGGGTCAGCGAAACCTAGTCGTCGTCTCTTCACCGGATCTGACTAAA-GAAGTACTC 354
Query 361 CTCACTCAAGGCGTTGAGTTTGGATCCAGAACGAGAAACGTCGTGTTCGACATTTTCACC 420
| ||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 355 CACACACAAGGTGTTGAGTTTGGATCTAGAACGAGAAACATCGTGTTCGACATTTTCACC 414
Query 421 GGGAAAGGTCAAGATATGGTGTTCACTGTTTACGGCGAGCATTGGAGGAAGATGAGAAGA 480
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 415 GGGAAAGGTCAAGATATGGTGTTCACTGTTTACGGAGAGCATTGGAGGAAGATGAGAAGG 474
Query 481 ATCATGACGGTTCCTTTCTTCACCAACAAAGTTGTTCAACAGAATCGTGAAGGTTGGGAG 540
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ATCATGACGGTTCCGTTCTTCACCAACAAAGTTGTTCAACAGAATCGTGAAGGTTGGGAA 534
Query 541 TTTGAAGCAGCTAGTGTTGTTGAAGATGTTAAGAAGAATCCAGATTCTGCTACGAAAGGA 600
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 535 TTCGAAGCAGCGAGTGTTGTTGAAGATGTGAAGAAGAATCCAGATTCTGCTACTAAAGGA 594
Query 601 ATCGTGTTGAGGAAACGTTTGCAATTGATGATGTATAACAATATGTTCCGTATCATGTTC 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ATTGTGTTGAGGAAACGTTTGCAATTGATGATGTATAACAATATGTTCCGTATCATGTTC 654
Query 661 GATAGAAGATTTGAGAGTGAGGATGATCCTCTTTTCCTTAGGCTTAAGGCTTTGAATGGT 720
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 655 GATAGAAGATTTGAGAGTGAAGATGATCCTCTTTTTCTTAGGCTTAAGGCTTTGAATGGT 714
Query 721 GAGAGAAGTCGATTAGCTCAGAGCTTTGAGTATAACTATGGAGATTTCATTCCTATCCTT 780
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 715 GAGAGAAGTCGATTAGCTCAGAGCTTTGAGTACAACTATGGAGATTTCATCCCTATCCTT 774
Query 781 AGACCATTCCTCAGAGGCTATTTGAAGATTTGTCAAGATGTGAAAGATCGAAGAATCGCT 840
||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 775 AGACCATTCCTTAGAGGTTATTTGAAGATTTGCCAAGATGTGAAGGATCGAAGAATTGCT 834
Query 841 CTTTTCAAGAAGTACTTTGTTGATGAGAGGAAGCAAATTGCGAGTTCTAAGCCTACAGGT 900
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CTATTCAAGAAGTACTTTGTTGATGAGAGGAAGCAAATTGCGAGTTCTAAGCCTACAGGT 894
Query 901 AGTGAAGGATTGAAATGTGCCATTGATCACATCCTTGAAGCTGAGCAGAAGGGAGAAATC 960
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 895 AGTGAAGGATTGAAATGTGCCATTGATCATATCCTTGAAGCTGAACAGAAGGGAGAAATC 954
Query 961 AACGAGGACAATGTTCTTTACATCGTCGAGAACATCAATGTCGCCGCGATTGAGACAACA 1020
|| |||||||| |||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 955 AATGAGGACAACGTTCTTTACATCGTCGAGAACATCAACGTTGCTGCGATTGAGACAACA 1014
Query 1021 TTGTGGTCTATCGAGTGGGGAATTGCAGAGCTAGTGAACCATCCTGAAATCCAGAGTAAG 1080
|||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1015 TTGTGGTCAATCGAATGGGGAATTGCGGAGCTGGTGAACCATCCTGAAATCCAGAGTAAG 1074
Query 1081 CTAAGGAACGAACTCGACACAGTTCTTGGACCGGGTGTGCAAGTCACCGAGCCTGATCTT 1140
|||||||| ||| ||||||| ||||||||||||||||||||||| || |||||||| |||
Sbjct 1075 CTAAGGAATGAAATCGACACGGTTCTTGGACCGGGTGTGCAAGTGACTGAGCCTGAGCTT 1134
Query 1141 CACAAACTTCCATACCTTCAAGCTGTGGTTAAGGAGACTCTTCGTCTGAGAATGGCGATT 1200
||||| ||||||||||||||||| ||| | |||||||| |||||||| ||||||||||||
Sbjct 1135 CACAAGCTTCCATACCTTCAAGCAGTGATCAAGGAGACACTTCGTCTAAGAATGGCGATT 1194
Query 1201 CCTCTCCTCGTGCCTCACATGAACCTCCATGATGCGAAGCTCGCTGGCTACGATATCCCA 1260
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 1195 CCTCTCCTCGTGCCTCACATGAACCTCCACGACGCCAAGCTCGCTGGCTACGATATCCCA 1254
Query 1261 GCAGAAAGCAAAATCCTTGTTAATGCTTGGTGGCTAGCAAACAACCCCAACAGCTGGAAG 1320
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GCAGAAAGCAAAATCCTTGTCAATGCTTGGTGGCTAGCAAACAACCCCAACAGCTGGAAG 1314
Query 1321 AAGCCTGAAGAGTTTAGACCAGAGAGGTTCTTTGAAGAAGAATCGCACGTGGAAGCTAAC 1380
|| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 1315 AAACCTGAAGAGTTTAGACCAGAGAGGTTCTTGGAAGAAGAAGCGCACGTGGAAGCGAAT 1374
Query 1381 GGTAATGACTTCAGGTATGTGCCATTTGGTGTTGGACGTCGAAGCTGTCCCGGGATTATA 1440
|||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1375 GGTAATGACTTCAGGTTTGTGCCGTTTGGTGTTGGACGTAGAAGCTGTCCCGGGATTATA 1434
Query 1441 TTGGCATTGCCTATTTTGGGGATCACCATTGGTAGGATGGTCCAGAACTTCGAGCTTCTT 1500
||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1435 TTGGCATTGCCCATTTTGGGAATCACCATTGGAAGGATGGTCCAAAACTTCGAGCTGCTT 1494
Query 1501 CCTCCTCCAGGACAGTCTAAAGTGGATACTAGTGAGAAAGGTGGACAATTCAGCTTGCAC 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CCTCCTCCAGGACAGTCTAAAGTGGATACTAGTGAGAAAGGTGGACAATTCAGCTTGCAC 1554
Query 1561 ATCCTTAACCACTCCATAATCGTTATGAAACCAAGGAACTGTTAAACTTTCTGCACaaaa 1620
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1555 ATCCTTAACCACTCCACAATCGTTATGAAACCAAGGAACTTTTAAATTTTCTGCA-AAAA 1613
Query 1621 aaaaGGATGAAGATGACTTTA-TAAATGTTTGTGAAATCTGTTGAAATATTCCCTTGTTT 1679
| ||| | | | || | | |||||||||||||||||||| ||||||| |||||
Sbjct 1614 A------TGACTTT-A-TATAATGA-TGTTTGTGAAATCTGTTGAA-TATTCCCATGTTT 1663
Query 1680 TGCTTTTGTGAGATGTTTTTGTGTAAAATGTCTTTAAATGGTTCGTTCTA-CGATTGCAA 1738
||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||
Sbjct 1664 TGCTTTTGTGAGATGTTTT-GTGTAAAATGTCTTTAAATGGCTCGTTCTATCGATTGCAA 1722
Query 1739 TAATAATTAGTGGTGCTCATTGTTTTGGATGGATCAATGTTATACTTATATCATTTGAAA 1798
|||| | |||||||| |||||||||| ||||| || || || || |||||||| |||
Sbjct 1723 TAAT--T-AGTGGTGCCCATTGTTTTGAATGGA-CATTG--ATG-TTCTATCATTTCAAA 1775
Query 1799 ATCTC 1803
|||||
Sbjct 1776 ATCTC 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67686365365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5