BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30500.1 Length=1754 Score E Sequences producing significant alignments: (Bits) Value Ahg481962 jgi|Araly1|481962|fgenesh2_kg.4__1022__AT2G30500.1 2338 0.0 > Ahg481962 jgi|Araly1|481962|fgenesh2_kg.4__1022__AT2G30500.1 Length=1590 Score = 2338 bits (1266), Expect = 0.0 Identities = 1487/1595 (93%), Gaps = 10/1595 (1%) Strand=Plus/Plus Query 11 tttCTCTGCACTCCACGGTCATGGCTTCGTCTACGGCTCAGAGCAAGAAGCAGTTTAAGA 70 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1 TTTCTCTGCACTCCACGGTCATGGCCTCATCTACGGCTCAGAGCAAGAAGCAGTTTAAGA 60 Query 71 GGTCTATGACTAAGAAATCACATTCATGGTGGTGGGATAGTCACAATTGTCCCAAGAACT 130 |||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 61 GGTCTATGACCAAGAAATCACACTCATGGTGGTGGGATAGTCACAATTCTCCCAAGAACT 120 Query 131 CAAAATGGCTTGCAGAGAATCTAGAAAAGATGGATGATCGAGTGAACCACATGTTAAAAC 190 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 121 CAAAATGGCTCGCAGAGAATCTAGAGAAGATGGATGATCGAGTGAACCACATGTTGAAAC 180 Query 191 TGATTGAAGAAGACGCAGACTCTTTTGCAAAGAAAGCTCAGATGTATTTTCAGAAACGTC 250 |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct 181 TGATTGAAGAAGACGCAGACTCTTTTGCCAAGAAAGCTCAGATGTATTTCCAGAAGCGTC 240 Query 251 CCGAGTTAATCCAGCTTGTCGAGGAATTCTACCGCATGTATCGCGCATTGGCTGAGCGTT 310 | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 241 CAGAGTTAATCCAACTTGTTGAGGAATTCTACCGCATGTATCGCGCATTGGCTGAGCGTT 300 Query 311 ATGATCAAGCTAGTGGTGAACTTCAGAAGAACCATACATCTGAGATCCAGTCACAGAGCT 370 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 301 ATGATCAAGCTAGTGGTGAACTTCAGAAGAATCATACATCTGAGATCCAGTCACAGAGCT 360 Query 371 CTCTTGAGATATCATCTCCTACCAAAGAGAAGTTGAGTCGCCGTCAATCTAGCCATAAAG 430 |||||||| ||||||||||||||||||||||||||||||| ||||||||| || |||||| Sbjct 361 CTCTTGAGTTATCATCTCCTACCAAAGAGAAGTTGAGTCGTCGTCAATCTGGCAATAAAG 420 Query 431 AAGAGGAAGATTCATCGTCTTTGACAGATTCTGGTTCTGATTCTGATCATTCCTCTGCCA 490 |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 421 AAGAGGAAGATTCATCATCTTTGACTGATTCCGGTTCTGATTCTGATCATTCCTCTGCCA 480 Query 491 ATGATGAAGACGGTGACGAGGCATTGATCCGTAGAATGGCTGAACTT-GAGCTTGAGCTT 549 |||||||||||| |||||||||| ||||||| || |||||||| || |||||||||||| Sbjct 481 ATGATGAAGACGCTGACGAGGCACTGATCCGAAGGATGGCTGAT-TTAGAGCTTGAGCTT 539 Query 550 CAAGAGACGAAACAGAAGCTCCTTCTCCAGCAGGAAAGTGTTGATGGTGACAACAATGTT 609 |||||||| ||||| ||||||||||||||||||||||||||| ||||||| || |||||| Sbjct 540 CAAGAGACAAAACAAAAGCTCCTTCTCCAGCAGGAAAGTGTTAATGGTGATAATAATGTT 599 Query 610 GATCTCCTTCACAAAATTACTACATATGAGGGAGAGCTTAAAGAAGCTAATGAGAAGATG 669 ||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||| Sbjct 600 GATCTCCTTCAGAAAATTGCTGTTTATGAGGGAGAGCTTAAAGAGGCTAATGAGAAGATG 659 Query 670 CGAATGCACGAAGACGAGATTGCTAATCTGAAGAATCAGCTTCAGAGCTTCATGTCTTTT 729 |||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||| ||| Sbjct 660 CGAATGCACGAAGAAGAGATCGCTAATCTGAAGGTTCAGCTTCAGAACTTCATGTCCTTT 719 Query 730 GACACAGAGGATCATCTTGGTGCTGAACAAAAGAGTGTTGATTTGGATAAAGAGGACACT 789 |||||||| | |||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 720 GACACAGAAGCTCATCTTGGTGCTGAAGAAAAGAGTCCTGATTTGGATAAAGAGGACACT 779 Query 790 AAAGAAGATGCAGTAGCTACAAAAGTGCTAGCCTTGGAGGAAGAGCTGAGTATCGCGAAA 849 ||||||||||||| |||||||||| |||||||||||||||||||||| |||| ||||||| Sbjct 780 AAAGAAGATGCAGCAGCTACAAAATTGCTAGCCTTGGAGGAAGAGCTCAGTAACGCGAAA 839 Query 850 GAGAAGCTTCAGCACTTTGAGAAAGAGACTTATTCTCTGAAAAAT-GAGCTCGAG-ATCG 907 ||||||||||| ||||||||||||||||||||||| || |||||| ||||| || | || Sbjct 840 GAGAAGCTTCAACACTTTGAGAAAGAGACTTATTCACT-AAAAATTGAGCTAGAACA-CG 897 Query 908 GCAAAGCCGCTGAGGAGAAGCTGAAGAGCTTACAACATGAGCTCGAGTTGGCTCAGAGAG 967 | ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| || Sbjct 898 GTAAAGCTGCTGAGGAGAAGCTGAAGAGCTTACAGCATGAGCTTGAGTTGGCTCAGAAAG 957 Query 968 ACGCTGATACCTACATAAACAAGCTCAACGCAGAGAAGAAAGAAGTCTTGAAGTTGCAGG 1027 || ||||||||||| |||||| |||||| | ||||||||||||||||||||||||||||| Sbjct 958 ACACTGATACCTACTTAAACAGGCTCAATGTAGAGAAGAAAGAAGTCTTGAAGTTGCAGG 1017 Query 1028 AGAGATTGGCAATGGTGAAAACTAGTTTACAGGATAGAGATAACGAGATAAGGGCATTGA 1087 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1018 AGAGATTAGCAATGGTGAAAACTAGTTTACAGGATAGAGATAACGAGATACGGGCATTGA 1077 Query 1088 AAACTGCGGTTTCAGACGCTGAACAGAAGATATTCCCCGAAAAAGCACAGATCAAGGGAG 1147 ||||||||||||| || |||||||| |||||||| ||||| ||||||||||||| ||||| Sbjct 1078 AAACTGCGGTTTCTGATGCTGAACAAAAGATATTTCCCGAGAAAGCACAGATCATGGGAG 1137 Query 1148 AAATGTCGAAGATGCTTGAAGAACGAAGCCAACTTGGAGAGCAACTGAGAGAGCTGGAAT 1207 |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| Sbjct 1138 AAATGTCGAAGATGCTCGAAGAAAGAAGCCAACTTGGGGAGCAACTGAGAGAGCTGGAAT 1197 Query 1208 CACATATAAGGCTGATCAAGGAAGAGAAAGCTGAAACAGAGGAGAAGCTTAGAGGAGGAA 1267 |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || Sbjct 1198 CACATATAAGGCTGATCACGGAAGAGAAAGCTGAAACAGAGGAGAAACTTAGAGGAG-AA 1256 Query 1268 -CTGAGAAAATCAGCGGAATgagagacgagagcaatgtgctaagagaagagattgggaag 1326 | ||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||| Sbjct 1257 GCCGAGAAAATCAGCGTAATGAGAGATGAGAGCAATATGCTAAGAGAAGAGATTAGGAAG 1316 Query 1327 agagaagagaagaTAAAGGAAACGGAAAAGCATATGGAGGAGCTTCACATGGAGCAAGTG 1386 |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 1317 AGAGAAGAGAAGGTAAAGGAAATGGAAAAGCATATGGAGGAGCTTCACATGGATCAAGTG 1376 Query 1387 AGGCTGAGAAGACGGTCAAGTGAGCTTACGGAAGAAGTGGAAAGGACGAGAGTGTCTGCA 1446 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1377 AGGCTGAGAAGACGGTCGAGTGAGCTTACAGAAGAAGTGGAAAGGACGAGAGTATCTGCA 1436 Query 1447 TCGGAAATGGCTGAGCAGAAAAGAGAAGCTATAAGACAGCTTTGTATGTCTCTTGACCAT 1506 || |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1437 TCAGAAATGGCTGAGCAGAAAAGAGAAGCTATAAGGCAGCTTTGTATGTCTCTTGAGCAT 1496 Query 1507 TACAGAGATGGGTACGACAGACTTTGGAGAGTTGTTGCAGGACATAAGAG-TAAGAGAGT 1565 ||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||| Sbjct 1497 TACAGAGATGGATACGACAGGCTTTGGAGAGTTGTTGCAGGACATAA-AGGTAAGAGAGT 1555 Query 1566 AGTGGTCTTATCAACTTGAAGTGTAAGAACAATGA 1600 |||||||||| |||| ||||||||||||||||||| Sbjct 1556 AGTGGTCTTAGCAACGTGAAGTGTAAGAACAATGA 1590 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65819943360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5