BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30500.1
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481962 jgi|Araly1|481962|fgenesh2_kg.4__1022__AT2G30500.1 2338 0.0
> Ahg481962 jgi|Araly1|481962|fgenesh2_kg.4__1022__AT2G30500.1
Length=1590
Score = 2338 bits (1266), Expect = 0.0
Identities = 1487/1595 (93%), Gaps = 10/1595 (1%)
Strand=Plus/Plus
Query 11 tttCTCTGCACTCCACGGTCATGGCTTCGTCTACGGCTCAGAGCAAGAAGCAGTTTAAGA 70
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1 TTTCTCTGCACTCCACGGTCATGGCCTCATCTACGGCTCAGAGCAAGAAGCAGTTTAAGA 60
Query 71 GGTCTATGACTAAGAAATCACATTCATGGTGGTGGGATAGTCACAATTGTCCCAAGAACT 130
|||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 61 GGTCTATGACCAAGAAATCACACTCATGGTGGTGGGATAGTCACAATTCTCCCAAGAACT 120
Query 131 CAAAATGGCTTGCAGAGAATCTAGAAAAGATGGATGATCGAGTGAACCACATGTTAAAAC 190
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 121 CAAAATGGCTCGCAGAGAATCTAGAGAAGATGGATGATCGAGTGAACCACATGTTGAAAC 180
Query 191 TGATTGAAGAAGACGCAGACTCTTTTGCAAAGAAAGCTCAGATGTATTTTCAGAAACGTC 250
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 181 TGATTGAAGAAGACGCAGACTCTTTTGCCAAGAAAGCTCAGATGTATTTCCAGAAGCGTC 240
Query 251 CCGAGTTAATCCAGCTTGTCGAGGAATTCTACCGCATGTATCGCGCATTGGCTGAGCGTT 310
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGAGTTAATCCAACTTGTTGAGGAATTCTACCGCATGTATCGCGCATTGGCTGAGCGTT 300
Query 311 ATGATCAAGCTAGTGGTGAACTTCAGAAGAACCATACATCTGAGATCCAGTCACAGAGCT 370
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 ATGATCAAGCTAGTGGTGAACTTCAGAAGAATCATACATCTGAGATCCAGTCACAGAGCT 360
Query 371 CTCTTGAGATATCATCTCCTACCAAAGAGAAGTTGAGTCGCCGTCAATCTAGCCATAAAG 430
|||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 361 CTCTTGAGTTATCATCTCCTACCAAAGAGAAGTTGAGTCGTCGTCAATCTGGCAATAAAG 420
Query 431 AAGAGGAAGATTCATCGTCTTTGACAGATTCTGGTTCTGATTCTGATCATTCCTCTGCCA 490
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 421 AAGAGGAAGATTCATCATCTTTGACTGATTCCGGTTCTGATTCTGATCATTCCTCTGCCA 480
Query 491 ATGATGAAGACGGTGACGAGGCATTGATCCGTAGAATGGCTGAACTT-GAGCTTGAGCTT 549
|||||||||||| |||||||||| ||||||| || |||||||| || ||||||||||||
Sbjct 481 ATGATGAAGACGCTGACGAGGCACTGATCCGAAGGATGGCTGAT-TTAGAGCTTGAGCTT 539
Query 550 CAAGAGACGAAACAGAAGCTCCTTCTCCAGCAGGAAAGTGTTGATGGTGACAACAATGTT 609
|||||||| ||||| ||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 540 CAAGAGACAAAACAAAAGCTCCTTCTCCAGCAGGAAAGTGTTAATGGTGATAATAATGTT 599
Query 610 GATCTCCTTCACAAAATTACTACATATGAGGGAGAGCTTAAAGAAGCTAATGAGAAGATG 669
||||||||||| |||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 600 GATCTCCTTCAGAAAATTGCTGTTTATGAGGGAGAGCTTAAAGAGGCTAATGAGAAGATG 659
Query 670 CGAATGCACGAAGACGAGATTGCTAATCTGAAGAATCAGCTTCAGAGCTTCATGTCTTTT 729
|||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||| |||
Sbjct 660 CGAATGCACGAAGAAGAGATCGCTAATCTGAAGGTTCAGCTTCAGAACTTCATGTCCTTT 719
Query 730 GACACAGAGGATCATCTTGGTGCTGAACAAAAGAGTGTTGATTTGGATAAAGAGGACACT 789
|||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 720 GACACAGAAGCTCATCTTGGTGCTGAAGAAAAGAGTCCTGATTTGGATAAAGAGGACACT 779
Query 790 AAAGAAGATGCAGTAGCTACAAAAGTGCTAGCCTTGGAGGAAGAGCTGAGTATCGCGAAA 849
||||||||||||| |||||||||| |||||||||||||||||||||| |||| |||||||
Sbjct 780 AAAGAAGATGCAGCAGCTACAAAATTGCTAGCCTTGGAGGAAGAGCTCAGTAACGCGAAA 839
Query 850 GAGAAGCTTCAGCACTTTGAGAAAGAGACTTATTCTCTGAAAAAT-GAGCTCGAG-ATCG 907
||||||||||| ||||||||||||||||||||||| || |||||| ||||| || | ||
Sbjct 840 GAGAAGCTTCAACACTTTGAGAAAGAGACTTATTCACT-AAAAATTGAGCTAGAACA-CG 897
Query 908 GCAAAGCCGCTGAGGAGAAGCTGAAGAGCTTACAACATGAGCTCGAGTTGGCTCAGAGAG 967
| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| ||
Sbjct 898 GTAAAGCTGCTGAGGAGAAGCTGAAGAGCTTACAGCATGAGCTTGAGTTGGCTCAGAAAG 957
Query 968 ACGCTGATACCTACATAAACAAGCTCAACGCAGAGAAGAAAGAAGTCTTGAAGTTGCAGG 1027
|| ||||||||||| |||||| |||||| | |||||||||||||||||||||||||||||
Sbjct 958 ACACTGATACCTACTTAAACAGGCTCAATGTAGAGAAGAAAGAAGTCTTGAAGTTGCAGG 1017
Query 1028 AGAGATTGGCAATGGTGAAAACTAGTTTACAGGATAGAGATAACGAGATAAGGGCATTGA 1087
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1018 AGAGATTAGCAATGGTGAAAACTAGTTTACAGGATAGAGATAACGAGATACGGGCATTGA 1077
Query 1088 AAACTGCGGTTTCAGACGCTGAACAGAAGATATTCCCCGAAAAAGCACAGATCAAGGGAG 1147
||||||||||||| || |||||||| |||||||| ||||| ||||||||||||| |||||
Sbjct 1078 AAACTGCGGTTTCTGATGCTGAACAAAAGATATTTCCCGAGAAAGCACAGATCATGGGAG 1137
Query 1148 AAATGTCGAAGATGCTTGAAGAACGAAGCCAACTTGGAGAGCAACTGAGAGAGCTGGAAT 1207
|||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1138 AAATGTCGAAGATGCTCGAAGAAAGAAGCCAACTTGGGGAGCAACTGAGAGAGCTGGAAT 1197
Query 1208 CACATATAAGGCTGATCAAGGAAGAGAAAGCTGAAACAGAGGAGAAGCTTAGAGGAGGAA 1267
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1198 CACATATAAGGCTGATCACGGAAGAGAAAGCTGAAACAGAGGAGAAACTTAGAGGAG-AA 1256
Query 1268 -CTGAGAAAATCAGCGGAATgagagacgagagcaatgtgctaagagaagagattgggaag 1326
| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct 1257 GCCGAGAAAATCAGCGTAATGAGAGATGAGAGCAATATGCTAAGAGAAGAGATTAGGAAG 1316
Query 1327 agagaagagaagaTAAAGGAAACGGAAAAGCATATGGAGGAGCTTCACATGGAGCAAGTG 1386
|||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1317 AGAGAAGAGAAGGTAAAGGAAATGGAAAAGCATATGGAGGAGCTTCACATGGATCAAGTG 1376
Query 1387 AGGCTGAGAAGACGGTCAAGTGAGCTTACGGAAGAAGTGGAAAGGACGAGAGTGTCTGCA 1446
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1377 AGGCTGAGAAGACGGTCGAGTGAGCTTACAGAAGAAGTGGAAAGGACGAGAGTATCTGCA 1436
Query 1447 TCGGAAATGGCTGAGCAGAAAAGAGAAGCTATAAGACAGCTTTGTATGTCTCTTGACCAT 1506
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1437 TCAGAAATGGCTGAGCAGAAAAGAGAAGCTATAAGGCAGCTTTGTATGTCTCTTGAGCAT 1496
Query 1507 TACAGAGATGGGTACGACAGACTTTGGAGAGTTGTTGCAGGACATAAGAG-TAAGAGAGT 1565
||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1497 TACAGAGATGGATACGACAGGCTTTGGAGAGTTGTTGCAGGACATAA-AGGTAAGAGAGT 1555
Query 1566 AGTGGTCTTATCAACTTGAAGTGTAAGAACAATGA 1600
|||||||||| |||| |||||||||||||||||||
Sbjct 1556 AGTGGTCTTAGCAACGTGAAGTGTAAGAACAATGA 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65819943360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5