BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30505.1
Length=1591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481963 jgi|Araly1|481963|fgenesh2_kg.4__1023__AT2G30505.1 2004 0.0
> Ahg481963 jgi|Araly1|481963|fgenesh2_kg.4__1023__AT2G30505.1
Length=1487
Score = 2004 bits (1085), Expect = 0.0
Identities = 1388/1523 (91%), Gaps = 65/1523 (4%)
Strand=Plus/Plus
Query 79 GAAATTGAAAATTATGGCTTACGGTTAGTCAAATTTTCAATTTTTATGTTGGGGATATTC 138
|||| |||| ||||||||| ||||||||||||| |||||| |||||| |||||||| |||
Sbjct 18 GAAAGTGAAGATTATGGCTCACGGTTAGTCAAAGTTTCAACTTTTATTTTGGGGATTTTC 77
Query 139 -ATGAGTAAAGATAGATTCATAAAGGTC-TAGTCTTTTTGGGATCTGATAGAATTCAAAG 196
||||||||||||||||||||||||| | ||||| ||||||||||| || ||||||||||
Sbjct 78 AATGAGTAAAGATAGATTCATAAAGG-CATAGTC-TTTTGGGATCTAATGGAATTCAAAG 135
Query 197 TGAGAAGTCGTTTGGTAGACTAGTGTAGGCAAATTCGGTGAATGTGATATAAGCTTGTTA 256
|| |||||||||||||| |||| | | | || || || | ||||||||
Sbjct 136 TGTTTAGTCGTTTGGTAGAGTAGT-T--G---A---GG-CAA----AT-T--GCTTGTTA 178
Query 257 CAGGAAAAA-TGGGA-ACTTGCTATATTTAGAAC-ATTTGAAATTTAGGTTTTTGTATGA 313
||| ||||| | ||| | ||||||||||||| || | ||| || | | | |||
Sbjct 179 CAGAAAAAACT-GGAGA-TTGCTATATTTAG-ACGA-TTG-AA---A------T-T-TGA 222
Query 314 CATAGGATCCAACAATAGATTAACGAATGATAACTGTTGGAAAGAGCCAGCCTTGATCTA 373
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 223 CATAGGAGCCAACAATAGATTAACGAATGATATCTGTTGGAAAGAGCCAGCCTTGATCTA 282
Query 374 TTGTTAAGAGAATTATGACCCTTGAACTTATCTTCCAACCAGCTTCCTTGTGATTTGAGA 433
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 283 TCGTTAAGAGAATTATGACCCTTGAACTTATCTTCCAACCAGCTT-CTTGTGATTTGAGA 341
Query 434 GAGAAACCAAATCTGATTTTCATGAAATCCAAAACAGAGCTCCAATGTCGGAGCTGCTtc 493
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GAGAAAACAAATCTGATTTTCATGAAATCCAAAACAGAGCTCCAATGTCGGAGCTG---- 397
Query 494 ctcctcctcctcctcctcctcctcctcctcctcctcctAGGAGGGATTCAGGATTTGGAG 553
|| ||||||||||||||||||| | || ||| |||||||||| ||||||||||
Sbjct 398 ------CT--TCCTCCTCCTCCTCCTCCT-C-CC-CCTGGGAGGGATTCCGGATTTGGAG 446
Query 554 ATCCTGCATTGGTATTCCCTGAGTTTGCTGCCAAACAATGCGGT-CTCGAAAAAGTTATA 612
||||||||||||| || |||||||||||||| ||||||||| || |||||||||||||||
Sbjct 447 ATCCTGCATTGGTTTTTCCTGAGTTTGCTGCGAAACAATGC-GTCCTCGAAAAAGTTATA 505
Query 613 GAGGAAGAAGGAGAAGGGGAAGATAGTAGCTATGGCAAAGGTTCTTTTGATCTGAGTTCA 672
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GAGGAAGAAGGAGAAGGGGAAGATAGTAGCTATGGCAAAGGTTCTTTTGATCTGAGTTCG 565
Query 673 AGATTCTCAAGCCCTTCCATTTCTCGAAACAGG-TTTGATGATGTTGAAAACCCGAAAAA 731
||||||||||||||||| | ||||||||| || ||||||||||||||||||||| |||
Sbjct 566 AGATTCTCAAGCCCTTCTGTATCTCGAAAC-GGATTTGATGATGTTGAAAACCCGGGAAA 624
Query 732 GGCTTCGTCTTTTAAGCGGCCTCCTTCTGCGTCGAGACTGTCTGGCTTTCGAGAGGAAGA 791
|||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 625 GGCTTCGTCTTTCAAGCGGCCTCTTTCCGGGTCGAGACTGTCTGGCTTTCGAGAGGAAGA 684
Query 792 AGAGGCCGATCGGAGTAGAAAATCGGGTTCCTTTGTGGATCATATCGGTCAGGAGGACAA 851
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 685 AGAGGCCGATCGGAGTAGAAAATCGGGTTCTTTTGTGGATCATATCGGTCAGGAGGACAA 744
Query 852 GAGAATATGCGCCTCTGGATGTTTCAGAAAATGCTGCGCTTGCACCTGCATGTTTGTTTC 911
||||||||| |||||||| || ||||| ||||||||||| || |||||||||||||||||
Sbjct 745 GAGAATATGTGCCTCTGGGTGCTTCAGGAAATGCTGCGCGTGTACCTGCATGTTTGTTTC 804
Query 912 TGTTGTCCTTATAATCGTCTTGTTGGTAGGATTGTCTGCAAACTCTTCAATCAAATCTAT 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 CATTGTCCTTATAATCGTCTTGTTGGTAGGATTGTCTGCAAACTCTTCAATCAAATCTAT 864
Query 972 ACTACCTCAGGTGCTTGTCACAAACCTCAAGTTCTCGAGATTGGATATCGCCAAATCATC 1031
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 865 ACTACCTCAGGTGCTTGTCACAAACCTCAAGTTCTCGAGATTGGATGTCGCCAAATCATC 924
Query 1032 GACAGATCTTCTGATGAATGCGAACTTGAACACGGTGCTTCAGCTCTCTAATAATAATGA 1091
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 925 GACAGATCTTCTGATGAATGCGAACTTGAACACGGTGCTTCAGCTCTCTAATAACAACGA 984
Query 1092 CAAGACGGTGCTATATTACAGTCCTATGAAAGCTGATATATCTTCTGAGAACATAAACCT 1151
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 985 CAAGACGGTGCTATATTACAGCCCCATGAAAGCTGATATATCTTCTGAGAACATAAACCT 1044
Query 1152 CGGAAAGAAGACACTTTCTGGATTCAAGCAGGACCCGGGAAATGTTACCTCCTTGAAGAT 1211
||||||||| | ||| ||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1045 CGGAAAGAAAATGCTTCCTGGATTCAAGCAGGACCCGGGAAACGTTACTTCTTTGAAGAT 1104
Query 1212 CCTCACAAGACTCAGAAAATCCAAAGTGTATGATGTTGATGCTACATTGCTGACAAACAA 1271
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1105 CCTCACAAGACTCAGAAAATCCAAAGTCTACGATGTTGATGCTACATTGCTGACAAACAA 1164
Query 1272 AGAGAAGACGCTTGAAGCTTTGGTTGATGTGTTCTTGAGAGGGAAACTGAGTGTTGATTG 1331
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1165 AGAGAAGACGCTTGAAGCTGTGGTTGATGTGTTCTTGAGAGGGAAACTAAGTGTTGATTG 1224
Query 1332 GTTGGGATTTAAGGTTCATATACCAATTGTTATTGCGTGCGAGAGTGTGAAGCAGAGTGA 1391
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1225 GTTGGGATTTAAGGTTCATATACCAATTGTTATTGCGTGCGAGAATGTGAAGCAGAGTGA 1284
Query 1392 TGTGATAAATGGTCTCAAACCAGCGTGCGATGTTCGAATCTTTTCCGAATGAAAACAATG 1451
|||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 1285 TGTGATAAATGGACTCAAACCAGCGTGCGATGTTCGAACCTTTTCCCAATGAAAACAGTG 1344
Query 1452 AGAGCTATTGAT-A--CACAAAG-ACCCTCTGATCTTTGTTTTGTTCTGTTCCTTTTTGT 1507
|||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1345 AGAGCTATTGATGATACACAAAACACCCTCTGATCTTTGTTTTGTTCTGTTCTTTTTTGT 1404
Query 1508 TGTTGCTAATTTACTCGTTGTAGATTGATGAATACATAGAAAGAGAGAAGTGACTCAACT 1567
|||||||||||| || |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1405 TGTTGCTAATTTTCTTGTTGTAGATTGATGAATACATAGAAAGAGAGAAGTGTCTTAACT 1464
Query 1568 TT-GTTTCTCTAAACTTAACATC 1589
|| ||||||||||||||||||||
Sbjct 1465 TTTGTTTCTCTAAACTTAACATC 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59611233425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5