BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30530.1
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933554 jgi|Araly1|933554|scaffold_401542.1 1842 0.0
> Ahg933554 jgi|Araly1|933554|scaffold_401542.1
Length=1169
Score = 1842 bits (997), Expect = 0.0
Identities = 1114/1168 (95%), Gaps = 17/1168 (1%)
Strand=Plus/Plus
Query 136 AGCATGAGCGTCAGAAGTTGATGAACAAAGTCGACGAAATCGAGGATTTCAGATTCGAGG 195
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 1 AGCATGAGCGTCAGAAGTTGATGAAGAAAGTCGACGAAATTGAGGATTTCAGATTCGAAG 60
Query 196 ATCTCGAAATGGAGACGGAGAAAGATAAGGAAAGGATGATGAC-GC--CGAC---GACGA 249
||||||||||||||||||||||||||||||||||||||||| | || |||| |||||
Sbjct 61 ATCTCGAAATGGAGACGGAGAAAGATAAGGAAAGGATGATGCCGGCGACGACGAGGACGA 120
Query 250 -GA--ATGTCTTATTCATCTTCGTCGTCTCCGTCTCCATCTTCGGCTTCATCATCTGCTG 306
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGAGGATGTCTTATACATCTTCGTCGTCTCCGTCTCCATCTTCGGCTTCATCATCTGCTG 180
Query 307 CGTCCTCTCTCGCTGCCAAGGCAATTCGAGCATCTTCTGCGCATAGAGACTCTTCTCTTT 366
|||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTCGTCTCTCGCTGCGAAGGCGATTCGAGCATCTTCTGCGCATAGAGACTCTTCTCTTT 240
Query 367 CTTCTGCTTACTCGTCTCCTTCTTCTGCTCCTGTTCCCACTCCTCCCAAGGAGGTGAATA 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCTGCTTACTCGTCTCCTTCTTCTGCTCCTGTTCCCACTCCTCCCAAGGAGGTGAATA 300
Query 427 AGGCTTATGAGTATACTTCTATGAAGAGTTTGAATGAACCAAAACGAGGCTTTTGGGGAA 486
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 AGGCTCATGAGTATACTTCTATGAAGAGTTTGAATGAACCAAAACGAGGCTTTTGGGGGA 360
Query 487 GTTTAGCTAGTAAAGCTAAGGCTTTTTTGGATGAGGATGATCCTAATCAGTTGCCTCAAA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTTAGCTAGTAAAGCTAAGGCTTTTTTGGATGAGGATGATCCTAATCAGTTGCCTCAAA 420
Query 547 GTCCTAAGAGAATGGAGCAGAGCATACCTTCTGCGACAACTTCAGGAACTAAGGAAGCTG 606
|||||||||||| |||||||| |||||||||| | || ||||||||||||||||| || |
Sbjct 421 GTCCTAAGAGAACGGAGCAGAACATACCTTCTCCAACGACTTCAGGAACTAAGGAGGCCG 480
Query 607 GTCAGACTGGTAGGAAAAGCGAGAATCCTTCATTACAG-AGAAGATTAGATGCGATCACT 665
|||||||||||||||||||||||||||||||||||||| || || ||||| || ||||||
Sbjct 481 GTCAGACTGGTAGGAAAAGCGAGAATCCTTCATTACAGAAG-AGGTTAGACGCCATCACT 539
Query 666 TCATCGTTGAATTACATTGGTGGCACCATTGGTACTGTTGTTGAGGAGGGTATTACAGCT 725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 TCATCGTTGAATTACATTGGTGGCACCATTGGTACTGTTGTTGAGGAGGGTATTACTGCT 599
Query 726 GTGGAGAATCGTACTGCAGGCATCATTCAAGAAACCCGTAAAAAGATTaaaaaaaaGCCA 785
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTGGAGAACCGTACTGCAGGAATCATTCAAGAAACCCGTAAAAAGATTAAAAAAAAGCCA 659
Query 786 AGTCTTACAAGGAACCAGCAGAATCCTGAGATACAAGCTGATTTGGAGATTCAACTAAAG 845
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 660 AGTCTTACAAGGAACCAGCAGAATCCTGAGATACAAGCAGATTTGGAAATTCAACTCAAG 719
Query 846 GCATCTCGCGACGTTGCAATGGCCATGGCTGCCAAGGC-AAAGCTTTTACTTCGGGAGCT 904
|||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 720 GCATCTCGCGACGTTGCAATGGCCATGGCTGCCAAGGCGAAA-CTCTTACTTCGGGAGCT 778
Query 905 GAAGATGGT-AAAGTCTGATCTGGCTTTTGCGAAGCAACGATGCGCACAGCTGGAAGAAG 963
||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 779 GAAGATGGTGAAA-TCTGATCTGGCTTTTGCAAAGCAACGATGCGCACAGCTGGAAGAAG 837
Query 964 AAAATAAGGTTCTGAGGGAGAACCGTAGTGGCGACAGTCAGACAGATGACGATGATCTGG 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAAATAAGGTTCTGAGGGAGAACCGTAGTGGCGACAGTCAGACAGATGACGATGATCTGG 897
Query 1024 TGCGACTTCAACTGGAAACACTGTTAGCTGAGAAAGCACGGTTGGCTCATGAAAACTCGA 1083
|||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 898 TGCGACTTCAACTGGAAACATTATTAGCTGAGAAAGCTCGGTTGGCTCATGAAAACTCGA 957
Query 1084 TATACACCCGCGAAAACCTCTATCTGAGAGGAGTCGTCGAATATCACCAGCTAACAATGC 1143
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 958 TATACACTCGCGAAAACCTCTATCTGAGAGGAGTCGTCGAATATCACCAGCTCACAATGC 1017
Query 1144 AAGATGTGGTCTACTTTGATGAGAAGACTGAAGAAGTAACGGAGGTATATCCCATTAATG 1203
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1018 AAGATGTGGTCTACTTTGATGAGAAGACTGAAGAAGTAACTGAGGTATATCCCATTAATG 1077
Query 1204 TGTCTTCAATGTCTTCTTCATCAGATAACTCTTACAATCCAAATCCAAGTTTCTTGGAGC 1263
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1078 TGTCTTCAATGTCTTCTTCATCAGATAACTCTCACAATCCAAATCCAAGTTTCTTGGAGC 1137
Query 1264 TCAAATGAAACACCA-CAACAACTATCA 1290
||||||||||||| | |||| ||| |||
Sbjct 1138 TCAAATGAAACAC-ATCAACTACTCTCA 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54888043045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5