BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30550.2
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481969 jgi|Araly1|481969|fgenesh2_kg.4__1029__AT2G30550.2 2453 0.0
Ahg470702 jgi|Araly1|470702|fgenesh2_kg.1__656__AT1G06800.1 992 0.0
> Ahg481969 jgi|Araly1|481969|fgenesh2_kg.4__1029__AT2G30550.2
Length=1642
Score = 2453 bits (1328), Expect = 0.0
Identities = 1546/1649 (94%), Gaps = 23/1649 (1%)
Strand=Plus/Plus
Query 8 CGAAATCAAGCTTTTGAAGCTTCTCAACAATGGCGGCTATTCCTTCCCACAACAACCTTC 67
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4 CGAAATCAAGCTTTTGAAGCTTCTCAACAATGGCGACTATTCCTTCCCACAACAACCTTC 63
Query 68 TTACCATCAACCACAAAAACTCCATAACCGGT------TCTTCTTCCCTAAATACC-AAT 120
|||||||||||||||||||||||||||||||| |||||||| | |||||| |||
Sbjct 64 TTACCATCAACCACAAAAACTCCATAACCGGTCACCACTCTTCTTCGGTTAATACCAAAT 123
Query 121 TTCTCAGAAATCAATTTTCCCGCCAAATTCCGAGTAGCTACGAGAGCTTTGTCCAGAACC 180
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 124 TT-TCAGAAATCAATTTTCCCGCCAAATTCCAAGTAGCTACGAGAGCTTTGTCCAGAACC 182
Query 181 GACGAGTCGTCTTTATCCGCCGTGATTTCTCGCCTCGAGCGAGAAAGGCGGGAAAGACAA 240
|||||||| ||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 183 GACGAGTCTTCTCTATCCGCCGTGATTTCTCGTCTCGAGCGCGAAAGGCGGGAAAGACAA 242
Query 241 GGTTTATTAATCGAGGAAGCGGAAGGAGCT-GGAGAACTATGGATGACGGCGGAAGATAT 299
|| | |||||||| ||||| ||||||| | ||||||| ||| |||||||||| |||||
Sbjct 243 GG--T-TTAATCGACGAAGCCGAAGGAG-TGGGAGAACGGTGGTTGACGGCGGAGGATAT 298
Query 300 TCGCCGGCGAGATaaaaaaaCCGAAGAAGAAAGAAGACTAAGAGACACGTGGCGTAAGAT 359
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 299 TCGCCGGCGTGATAAAAAAACCGAAGAAGAGAGAAGACTAAGAGACACGTGGCGTAAGAT 358
Query 360 CCAAGGAGAAGACGATTGGGCCGGGTTAATGGATCCAATGGATCCAATTCTTAGATCGGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCAAGGAGAAGACGATTGGGCCGGGTTAATGGATCCAATGGATCCAATTCTTAGATCGGA 418
Query 420 GCTAATCCGTTACGGCGAAATGGCTCAAGCTTGTTACGACGCTTTCGATTTCGATCCCGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCTAATCCGTTACGGCGAAATGGCTCAAGCTTGTTACGACGCTTTCGATTTCGATCCCGC 478
Query 480 TTCCAAATACTGCGGCACCTCCAGGTTCACGCGACTCGAGTTCTTCGATTCTCTCGGAAT 539
||| ||||||||||||||||| || ||| |||| ||||||||||||||||||||||||||
Sbjct 479 TTCGAAATACTGCGGCACCTCAAGATTCTCGCGGCTCGAGTTCTTCGATTCTCTCGGAAT 538
Query 540 GATCGATTCCGGTTACGAGGTGGCGCGTTACCTCTACGCGACGTCGAACATCAATCTCCC 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 GATCGATTCCGGTTACGAGGTGGCGCGTTACCTCTACGCGACGTCGAATATCAATCTCCC 598
Query 600 GAACTTCTTCTCGAAATCGCGGTGGTCTAAAGTCTGGAGCAAAAACGCTAATTGGATGGG 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 GAACTTCTTCTCGAAATCGCGGTGGTCTAAAGTTTGGAGCAAAAACGCTAATTGGATGGG 658
Query 660 ATACGTCGCCGTTTCAGACGACGAAACGTCTCGTAACCGACTCGGCCGCCGTGATATCGC 719
||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 659 ATACGTCGCTGTCTCCGACGACGAAACGTCTCGTAACCGCCTCGGCCGCCGTGATATCGC 718
Query 720 GATTGCGTGGAGAGGAACCGTTACGAAACTTGAATGGATCGCGGATCTAAAGGATTATTT 779
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 719 GATTGCGTGGAGAGGAACCGTCACGAAACTAGAGTGGATCGCGGATCTAAAGGATTATTT 778
Query 780 AAAACCGGTAACCGAAAACAAGATCCGATGCCCCGACCCGGCCGTTAAAGTCGAATCCGG 839
|||||| ||| ||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct 779 AAAACCAGTATCCGGTAATAATATCCGGTGCCCCGACCCGGCCGTTAAAGTCGAATCCGG 838
Query 840 ATTCTTAGATCTCTACACTGACAAAGACACAACCTGCAAATTCGCGAGATTCTCAGCGCG 899
|||||| ||||||||||| |||||||||| ||||||||||||||| | |||||| |||||
Sbjct 839 ATTCTTGGATCTCTACACAGACAAAGACAAAACCTGCAAATTCGCAAAATTCTCGGCGCG 898
Query 900 TGAACAGATTTTAACGGAGGTGAAACGGT-TAGTGGAAGA-ACACGGCGACGACGATGAT 957
||| |||||||||||||||||||| || | | |||||| | | ||||||| ||||||||
Sbjct 899 TGAGCAGATTTTAACGGAGGTGAAGCG-TCTGGTGGAA-ATATACGGCGATGACGATGAC 956
Query 958 TCCGATTTAAGCATCACCGTGACGGGACACAGTCTCGGCGGCGCGTTAGCGATATTAAGC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 957 TCCGATTTAAGCATCACCGTGACGGGACACAGTCTCGGCGGCGCGTTAGCGATGTTAAGC 1016
Query 1018 GCGTACGATATAGCGGAGATGAGATTGAATCGGAGTAAGAAAGGGAAAGTGATTCCGGTG 1077
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1017 GCGTACGATATAGCGGAGATGGGATTGAATCGGAGTAAGAACGGGAAAGTGATTCCGGTG 1076
Query 1078 ACGGTGTTGACATACGGAGGACCGAGAGTTGGGAACGTTAGGTTTAGGGAGAGGATGGAG 1137
||||||||||| ||||||||||||||||| |||||||| | ||||| ||| |||||||||
Sbjct 1077 ACGGTGTTGACTTACGGAGGACCGAGAGTGGGGAACGTGAAGTTTAAGGATAGGATGGAG 1136
Query 1138 GAA-TTGGGAGTGAAAGTGATGAGAGTAGTGAATGTTCACGACGTGGTTCCCAAGTCGCC 1196
|| |||| |||||| ||| ||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1137 GAGCTTGG-AGTGAAGGTGCTGAGAGTGGTGAATGTTCACGACGTCGTTCCTAAGTCGCC 1195
Query 1197 GGGATTGTTTTTGAACGAGAGTAGACCTCACGCGCTGATGAAGATAGCGGAGGGGTTGCC 1256
|||||||||||||||||||||| | |||||||||||||||||||| |||||||| |||||
Sbjct 1196 GGGATTGTTTTTGAACGAGAGTCGGCCTCACGCGCTGATGAAGATCGCGGAGGGTTTGCC 1255
Query 1257 GTGGTGTTATAGCCACGTGGGGGAGGAGCTGGCGTTGGATCATCAGAACTCGCCGTTTCT 1316
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1256 GTGGTGTTATAGCCACGTGGGGGAGGAGCTGGCGTTGGATCATCAAAACTCGCCGTTTCT 1315
Query 1317 TAAACCTTCCGTTGATGTTTCTACTGCTCATAATCTTGAAGCTATGCTTCAT-TTACTTG 1375
|||||||||||||||| |||||||| | |||||||||||||||||||||||| || ||||
Sbjct 1316 TAAACCTTCCGTTGATCTTTCTACTTCCCATAATCTTGAAGCTATGCTTCATCTT-CTTG 1374
Query 1376 ACGGGTATCATGGAAAAGGAGAGAGATTTGTGCTGTCGAGTGGGAGAGACCATGCGCTAG 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 ACGGGTATCATGGAAAAGGAGAGAGATTTGTGCTGTCGAGTGGGAGAGACCATGCGCTAG 1434
Query 1436 TGAACAAAGCGTCGGACTTTTTGAAAGAGCATTTACAAATTCCACCGTTTTGGCGTCAAG 1495
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1435 TGAACAAAGCGTCGGACTTTTTGAAAGAGCACTTACAAATTCCACCGTTTTGGCGTCAAG 1494
Query 1496 ACGCGAATAAAGGAATGGTTCGGAACAGTGAAGGTCGTTGGATTCAAGCCGAGCGTCTCC 1555
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1495 ACGCGAACAAAGGAATGGTTCGGAATAGTGAAGGTCGTTGGATTCAAGCCGAGCGACTCC 1554
Query 1556 GTTTTGAGGATCATCATTCTCCTGATATCCACCACCATCTCTCTCAGCTCCGTCTTGATC 1615
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1555 GTTCTGAGGATCATCATTCTCCTGACATCCACCACCATCTCTCTCAGCTCCGTCTTGATC 1614
Query 1616 ATCCT-TGTTAATCACACGCACATATATA 1643
||||| | |||||||||| ||||||||||
Sbjct 1615 ATCCTCT-TTAATCACACACACATATATA 1642
> Ahg470702 jgi|Araly1|470702|fgenesh2_kg.1__656__AT1G06800.1
Length=1660
Score = 992 bits (537), Expect = 0.0
Identities = 1088/1350 (81%), Gaps = 53/1350 (4%)
Strand=Plus/Plus
Query 285 GACGGCGGAAGATATTCGCCGGCGAGATaaaaaaaCCGAAGAA-GAAAGAAGACTAAGAG 343
||||||||| || || ||||| || |||| | || | ||||| ||| || | ||||
Sbjct 311 GACGGCGGAGGACATCCGCCGACGGGATAGAGAAGCTAAAGAATCCAAG-AGGTTGAGAG 369
Query 344 ACACGTGGCGTAAGATCCAAGGAGAAGACGATTGGGCCGGGTTAATGGATCCAATGGATC 403
|||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |
Sbjct 370 ACACGTGGCGGAAGATCCAAGGGGAAGATGATTGGGCCGGGTTAATGGATCCTATGGACC 429
Query 404 CAATTCTTAGATCGGAGCTAATCCGTTACGGCGAAATGGCTCAAGCTTGTTACGACGCTT 463
| |||| ||||| || || ||||| ||||| |||||||| || || ||||||||||| |
Sbjct 430 CGGTTCTGAGATCCGAACTGATCCGGTACGGAGAAATGGCCCAGGCCTGTTACGACGCCT 489
Query 464 TCGATTTCGATCCCGCTTC-CAA-ATACTGCGGCACCTCCAGGTTCACGCGAC-TCGAGT 520
||||||||||| || ||| ||| ||||| || | || ||| |||||||| | || |
Sbjct 490 TCGATTTCGAT-CC-ATTCTCAAGGTACTGTGGGAGCTGCAGATTCACGCGCCGTC-ACC 546
Query 521 TCTTCGATTCTCTCGGAATGA-TCGATTCCGGTTACGAGGTGGCGCGTTACCTCTACGCG 579
| |||||||| ||||| || | |||||||||| ||||||||||||||||| |||||||||
Sbjct 547 TGTTCGATTCGCTCGGGAT-ACTCGATTCCGGCTACGAGGTGGCGCGTTATCTCTACGCG 605
Query 580 ACGTCGAACATCAATCTCCCGAACTTCTTCTCGAAATCGCGGTGGTCTAAAGTCTGGAGC 639
|||||||||||||| ||||| |||||||||||||||||| | ||||| || || ||||||
Sbjct 606 ACGTCGAACATCAACCTCCCTAACTTCTTCTCGAAATCGAGATGGTCCAAGGTGTGGAGC 665
Query 640 AAAAACGCTAATTGGATGGGATACGTCGCCGTTT-C-A-GACGACGAAACGTCTCG-TAA 695
|| ||||| ||||||||||| ||||| || |||| | | ||||||||| | | || |
Sbjct 666 AAGAACGCCAATTGGATGGGTTACGTGGCGGTTTCCGACGACGACGAAGCCACGCGCT-G 724
Query 696 CCGACTCGGCCGCCGTGATATCGCGATTGCGTGGAGAGGAACCGTTACGAAACTTGAATG 755
||| | || ||||| || |||||||| || |||||||| ||||| ||| || || ||
Sbjct 725 CCGTTTAGGACGCCGCGACATCGCGATCGCATGGAGAGGGACCGTCACGCGGCTCGAGTG 784
Query 756 GATCGCGGATCTAAAGGATTAT-TTAAAACCGGTAACCGAAAACAAG-ATCCGATGCCCC 813
||| |||||||| ||||||| | | ||||||||| ||| |||| | |||| ||||||
Sbjct 785 GATAGCGGATCTCAAGGATT-TCCTCAAACCGGTATCCGGAAAC-GGTTTCCGGTGCCCC 842
Query 814 GACCCGGCCGTTAAAGTCGAATCC-GGATTCTTAGATCTCTACACTGACAAAGACACAAC 872
|||||||||||||||| ||||||| || ||| | ||||||||||| ||||||||||| |
Sbjct 843 GACCCGGCCGTTAAAGCCGAATCCGGGTTTC-TGGATCTCTACACGGACAAAGACACGTC 901
Query 873 CTGCAAATTCGCGAGATTCTCAGCGCGTGAAC-AGATTTTAACGGAGGTGAAACGGTTAG 931
|||||| ||| | | |||||| |||||||||| || || | ||||| ||||| ||| | |
Sbjct 902 CTGCAATTTCTCAAAATTCTCGGCGCGTGAACAAG-TTCTGACGGAAGTGAAGCGGCTGG 960
Query 932 TGG-AAGAACACGGCGACGACGATGATTCCGATTTAAGCATCACCGTGACGGGACACAGT 990
||| ||| ||||||| || || || || | ||||||||||||||||||||||||
Sbjct 961 TGGAAAG-GTACGGCGATGAGGAAGAAGAAGAACTGAGCATCACCGTGACGGGACACAGT 1019
Query 991 CTCGGCGGCGCGTTAGCGATATTAAGCGCGTACGATATAGCGGAGATGAGAT-TGAATCG 1049
|||||||| ||||| ||| || ||||||||||||| | ||||||||| | | |||| |
Sbjct 1020 CTCGGCGGTGCGTTGGCGGTACTAAGCGCGTACGACGTGGCGGAGATGGG-TCTGAA-CA 1077
Query 1050 GAG-TAAGAAAGGGAAAGTGATTCCGGTGACGGTGTTGACATACGGAGGACCGAGAGTTG 1108
|| || |||||| ||||||||||||||||||| ||| || |||||||||||| | ||||
Sbjct 1078 GAACTAGGAAAGGAAAAGTGATTCCGGTGACGGCGTTCACGTACGGAGGACCGCGCGTTG 1137
Query 1109 GGAACGTTAGGTTT-AGGGAGAGGATGGAGGAATTGGGAGTGAAAGTGATGAGAGTAGTG 1167
||||| | | | || | ||||||||| ||||||||||||||||| ||| |||| || |||
Sbjct 1138 GGAACAT-ACGATTCAAGGAGAGGATTGAGGAATTGGGAGTGAAGGTGTTGAGGGTGGTG 1196
Query 1168 AATGTTCACGACGTGGTTCCCAAGTCGCCGGGATTGTTTTTGAACGAGAGTAG-ACCTCA 1226
|| | |||||||| || | |||||||||||| ||||| |||||||| || | ||| ||
Sbjct 1197 AACGAGCACGACGTCGTGGCTAAGTCGCCGGGACTGTTTCTGAACGAGCGT-GCACCACA 1255
Query 1227 CGCGCTGATGAAGATAG-CGG-AGGGGTTGCCGTGGTGTTATAGCCACGTGGGGGAGGA- 1283
||||| ||||| || | ||| ||| ||||||||||| ||||||||||||||||| |
Sbjct 1256 GGCGCTAATGAA-ATTGGCGGGAGGA-TTGCCGTGGTGCTATAGCCACGTGGGGGAA-AT 1312
Query 1284 GCTGGCGTTGGATCATCAGAACTCGCCGTTTCTTAAACCTTCCGTTGATGTTTCTACTGC 1343
|||| |||||||||||||||| |||||||| ||||| || |||||||| |||| |||||
Sbjct 1313 GCTGCCGTTGGATCATCAGAAGTCGCCGTTCCTTAAGCCCACCGTTGATCTTTCAACTGC 1372
Query 1344 TCATAATCTTG-AAGCTATGCTTCATTTACTTGACGGGTATCATGGAAAAGGAG-AGAGA 1401
|||||| |||| ||||| | || ||| | ||||||||||||||||| ||||| | |||||
Sbjct 1373 TCATAA-CTTGGAAGCTCTCCTCCATCTCCTTGACGGGTATCATGGGAAAGG-GCAGAGA 1430
Query 1402 TTTGTGCTGTCGAGTGGGAGAGA-CCATGCGCTAGTGAACAAAGCGTCGGACTTTTTGAA 1460
|||||| | || ||||||||||| ||| ||| ||||||||||||| || || ||||||||
Sbjct 1431 TTTGTGTTATCAAGTGGGAGAGATCCA-GCGTTAGTGAACAAAGCATCTGATTTTTTGAA 1489
Query 1461 AGAGCATTTACAAATTCCA-CCGTTTTGGCGTCAAGACGCGAATAAAGGAATGGTTC-GG 1518
||| ||||| || ||| || | |||||| |||||||| || ||||| ||||| | ||
Sbjct 1490 AGACCATTT-CATGGTCCCTCCCTATTGGCGCCAAGACGCAAACAAAGGGATGGT-CAGG 1547
Query 1519 AACAGTGAAGGTCGTTGGATTCAAGCC-GAGCGTC-TCCGTTTTGAGGATCATCATTCTC 1576
|||| ||| || |||||||||||| || || || | ||||| || ||||||||| |||
Sbjct 1548 AACACTGACGGCCGTTGGATTCAA-CCAGATCG-CATCCGTGCAGATGATCATCATGCTC 1605
Query 1577 CTGATATCCACCACCATCTCTCTCAGCTCC 1606
|||| || || || | |||| | || ||||
Sbjct 1606 CTGACATACATCAACTTCTCACCCAACTCC 1635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66581748260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5