BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G30570.1

Length=841
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933558 jgi|Araly1|933558|scaffold_401546.1                        778    0.0  


> Ahg933558 jgi|Araly1|933558|scaffold_401546.1
Length=470

 Score =  778 bits (421),  Expect = 0.0
 Identities = 441/451 (98%), Gaps = 0/451 (0%)
 Strand=Plus/Plus

Query  95   AAATCAATTGAAGAGTCTCTCAGTCGTTAGGGGAAGCAAATAGAGAAATGGCTAGCTTTA  154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2    AAATCAATTGAAGAGTCTCTCAGTCGTTAGGGGAAGCAAATAGAGAAATGGCTAGCTTTA  61

Query  155  CTGCCTCCGCTTCCACCGTCTCCGCCGCTCGTCCGGCTCTCCTTCTCAAGCCTACCGTCG  214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  62   CTGCCTCCGCTTCCACCGTCTCCGCCGCTCGTCCGGCTCTCCTTCTCAAGCCTACCGTCG  121

Query  215  CCATCTCTGCTCCTGTTCTTGGTTTGCCTCCAATGGGTAAGAAGAAGGGAGGAGTGAGAT  274
            || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  122  CCGTCTCCGCTCCTGTTCTTGGTTTGCCTCCAATGGGTAAGAAGAAGGGAGGAGTGAGAT  181

Query  275  GTTCAATGGAGACAAAGCAAGGAAACGTCTCAGTCATGGGGGCTGGAGTTTCAGCTGCAG  334
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct  182  GCTCAATGGAGACAAAGCAAGGAAACGTCTCAGTCATGGGGGCTGGAGTTTCAGCGGCTG  241

Query  335  CAACAGCTGCTTTGACGGCGGTGATGAGCAATCCCGCGATGGCTTTGGTTGATGAGAGGA  394
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  242  CAACAGCTGCTTTGACAGCGGTGATGAGCAATCCCGCGATGGCTTTGGTTGATGAGAGGA  301

Query  395  TGTCAACAGAAGGAACAGGATTACCCTTTGGTCTAAGCAACAACCTCTTGGGTTGGATTC  454
            |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  302  TGTCGACAGAAGGAACAGGATTACCTTTTGGCCTAAGCAACAACCTCTTGGGTTGGATTC  361

Query  455  TGTTTGGAGTCTTTGGTTTGATCTGGACTTTCTTCTTCGTCTACACTTCATCTCTCGAGG  514
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  362  TGTTTGGAGTCTTCGGTTTGATCTGGACTTTCTTCTTCGTCTACACTTCATCTCTCGAGG  421

Query  515  AGGATGAAGAATCTGGTCTTTCACTCTGAAG  545
            |||||||||||||||||||||||||||||||
Sbjct  422  AGGATGAAGAATCTGGTCTTTCACTCTGAAG  452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31108300272


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5