BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30575.1
Length=2302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933559 jgi|Araly1|933559|scaffold_401547.1 2948 0.0
Ahg470701 jgi|Araly1|470701|fgenesh2_kg.1__655__AT1G06780.1 1166 0.0
> Ahg933559 jgi|Araly1|933559|scaffold_401547.1
Length=1875
Score = 2948 bits (1596), Expect = 0.0
Identities = 1791/1884 (95%), Gaps = 17/1884 (1%)
Strand=Plus/Plus
Query 281 CTCTGAGAAGTTACGCACATTGATGAATCAAGTTCGTCGTTGGCAGAGGATTCTGATCCT 340
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 CTCTGAGAAGTGACGCACATTGATGAATCAAGTTCGTCGTTGGCAGAGGATTTTGATCCT 60
Query 341 CTCGCTGCTATTGTTATCTGTTTTAGCTCCGATTGTTTTCGTTTCGAATCGGCTCAAGAG 400
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCGCTGCTATTGTTATCTGTGTTAGCTCCGATTGTTTTCGTTTCGAATCGGCTCAAGAG 120
Query 401 CATCACTTCCGTCGATAGAGGAGAATTCATTGAAGAATTATCCGACATTACAGATAAGAC 460
|| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 121 TATTACTTCCGTCGATAGAGGAGAATTCATTGAAGAATTATCAGACATTACATATAAGAC 180
Query 461 CGAGGATGAACTTAGACTTACTGCTATTGAACAGGACGAAGAAGGCTTGAAGGAGCCTAA 520
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 C---GATGACCTTAGACTTACTGCTATTGAACAGGACGAAGAAGGCTTGAAGGAGCCTAA 237
Query 521 ACGTATTCTGCAGGATCGAGATTTTAATTCTGTGGTTTTGTCAAATTCCTCTGATAAAAG 580
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 ACGCATTCTGCAGGATCGAGATTTTAATTCTGTGGTTTCATCAAATTCCTCTGATAAAAG 297
Query 581 TAATGATACTGTGCAGTCTAATGAGGGAGACCaaaa-aaaCTTTCTCTCAGAAGTTGATA 639
|||||||||||||||||||||||||||||| ||||| || ||||||||||||| || ||
Sbjct 298 TAATGATACTGTGCAGTCTAATGAGGGAGA-CAAAACAACCTTTCTCTCAGAAATTTATG 356
Query 640 AGGGAAATAATCACAAACCAAAGGAGGAACAAGC---AGTTTCACAGAAAACCACAGTAA 696
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 357 GGGGAAATAATCACAAACCAAAGGAGGAAGAAGCTGTAGTTTCACAGAAAACCACAGTAA 416
Query 697 GCTCGAATGCGGAGGTGAAAATTTCAGCAAGAGATATTCAACTTAATCATAAAACGGAAT 756
|||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 417 GCTCGAATGCGGAGGTTAATCTTTCATCAAGAGATATTCAACTTAATCATAAAACGGAAT 476
Query 757 TCCGACCCCCTTCAAGTAAGAGTGAAAAGAATACAAGGGTTCAACTTGAAAGAGCAACAG 816
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 477 TCCGACCCCCTTCAGGTAAGAGTGAAAAGAATACAAGGGTTCAGCTTGAAAGAGCAACAG 536
Query 817 ATGAGAGGGTAAAGGAGATCAGAGACAAAATTATCCAAGCGAAAGCCTATCTGAATTTGG 876
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 537 ATGAGAGGATAAAGGAGATCAGAGACAAAATTATCCAAGCGAAAGCCTATCTGAACTTGG 596
Query 877 CCCTACCTGGGAATAACTCCCAAATCGTAAAGGAGTTGAGAGTTCGAACGAAAGAGCTGG 936
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 597 CCCTACCTGGGAATAACTCCCAAATCGTAAAGGAATTGAGAGTTCGAACGAAAAAGCTGG 656
Query 937 AACGGGCTACT-GGTGATACTACCAAGGATAAATATTTGCCAAAGAGCTCTCCTAACAGA 995
|||| ||| | |||||| |||| | |||||||||||||||||||||| |||||||||||
Sbjct 657 AACGAGCT-GTCGGTGATGCTACTACGGATAAATATTTGCCAAAGAGCACTCCTAACAGA 715
Query 996 TTGAAGGCCATGGAAGTTGCGTTATACAAGGTCAGCCGTGCCTTTCACAACTGCCCTGCC 1055
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 716 TTGAAGGCCATAGAAGTTGCGTTATACAAGGTCAGTCGTGCCTTTCACAACTGCCCTGCC 775
Query 1056 ATTGCTACCAAACTCCAAGCCATGACTTATAAAACCGAAGAACAAGCTCGGGCGCAGAAG 1115
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 776 ATTGCTACCAAACTCCAAGTCATGACTTATAAAACCGAAGAACAAGCTCGGGCGCAGAAG 835
Query 1116 AAACAAGCAGCATATTTAATGCAGCTTGCAGCAAGGACTACCCCAAAAGGGCTTCATTGT 1175
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AAGCAAGCAGCATATTTAATGCAGCTTGCAGCAAGGACTACCCCAAAAGGGCTTCATTGT 895
Query 1176 CTCTCAATGCGGTTGACAACAGAATATTTTACCCTGGATCACGAAAAAAGGCAGCTTTTG 1235
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 896 CTCTCAATGCGGTTGACAACAGAATACTTTACCCTGGATCACGAAAAAAGGCAGCTTTTG 955
Query 1236 CAACAAAGTTATAATGATCCTGATCTCTACCATTACGTAGTCTTCTCTGACAATGTTTTG 1295
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CAACAAAATTATAATGATCCTGATCTCTACCATTACGTAGTCTTCTCTGACAATGTTTTG 1015
Query 1296 GCCTCTTCGGTTGTTGTTAACTCTACAATCTCCTCATCAAAGGAACCGGATAAAATAGTA 1355
|||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1016 GCCTGTTCGGTTGTTGTTAACTCTACAATCTCCTCATCAAAGGAACCGCAAAAAATAGTA 1075
Query 1356 TTCCATGTGGTGACAGATTCACTCAATTACCCAGCAATCTCAATGTGGTTTTTACTAAAC 1415
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1076 TTCCATGTGGTGACTGATTCACTCAATTACCCAGCAATCTCAATGTGGTTTTTATTAAAC 1135
Query 1416 CCAAGTGGCAGAGCTTCAATCCAAATCCTAAACATTGATGAAATGAATGTCCTGCCATTG 1475
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1136 CCATGTGGCAGAGCTTCAATCCAAATCCTAAACATTGATGATATGAATGTCCTGCCTTTG 1195
Query 1476 TACCATGCTGAATTGCTGATGAAGCAAAATTCAAGTGACCCAAGAATCATTTCAGCGCTC 1535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GACCATGCTGAATTGCTGATGAAGCAAAATTCAAGTGACCCAAGAATCATTTCAGCGCTC 1255
Query 1536 AACCATGCACGCTTCTATCTCCCAGATATCTTCCCAGGTCTAAACAAGATCGTACTCTTC 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AACCATGCACGCTTCTATCTCCCAGATATCTTCCCAGGTCTAAACAAGATCGTACTCTTC 1315
Query 1596 GATCATGATGTAGTAGTGCAAAGGGATCTAACTAGACTGTGGAGCCTTGA-TATGACGGG 1654
|| |||||||||||||| ||||| ||||||| ||||||||||||| || | |||||||||
Sbjct 1316 GACCATGATGTAGTAGTTCAAAGAGATCTAAGTAGACTGTGGAGC-TTAAATATGACGGG 1374
Query 1655 GAAAGTTGTTGGAGCTGTAGAGACTTGTCTTGAAGGTGATCCTTCATATCGTTCGATGGA 1714
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1375 GAAAGTTGTTGGAGCTGTAGAGACGTGTCTTGAAGGTGAACCTTCATATCGTTCGATGGA 1434
Query 1715 CTCATTCATTAA-TTTCTCAGATGCATGGGTTTCTCAGAAATTTGATCCCAAGGCTTGCA 1773
| |||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1435 CACATTCATTAACTTT-TCAGATGCATGGGTTGCTCAGAAATTTGATCCCAAGGCTTGCA 1493
Query 1774 CTTGGGCATTCGGGATGAATCTATTTGATCTCGAAGAATGGAGAAGACAGGAGTTGACTT 1833
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1494 CTTGGGCATTCGGGATGAATCTATTTGATCTCCAAGAATGGAGAAGACAGGAGTTGACTT 1553
Query 1834 CTGTATACCTGAAATACTTCGACCTGGGAGT-AAAAGGACATCTGTGGAAAGCAGGGGGA 1892
||||||||| ||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 1554 CTGTATACCAGAAATACTTCGACCTGGGAGTTAAAAG-ACGTCTGTGGAAAGCAGGGGGC 1612
Query 1893 TTGCCAGTAGGTTGGTTGACTTTTTTCGGGCAAACGTTTCCGTTGGAAAAGAGATGGAAC 1952
|||||| |||||||||||||||| |||||| ||||||| || ||||||||||||| |||
Sbjct 1613 TTGCCAATAGGTTGGTTGACTTTCTTCGGGAAAACGTTACCATTGGAAAAGAGATTGAAT 1672
Query 1953 GTGGGTGGGTTAGGTCACGAATCAGGACTCAGGGCAAGCGACATCGAACAAGCAGCGGTT 2012
||||||||||||||||||||||||||| |||||||||||||||| |||||||| | ||||
Sbjct 1673 GTGGGTGGGTTAGGTCACGAATCAGGAGTCAGGGCAAGCGACATTGAACAAGCGGTGGTT 1732
Query 2013 ATACACTACGACGGGATCATGAAACCATGGCTGGACATCGGTATAGACAAGTACAAGCGC 2072
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1733 ATACACTACGACGGGATCATGAAGCCATGGCTAGACATCGGTATAGACAAGTACAAGCGC 1792
Query 2073 TACTGGAACATACATGTACCTTACCATCACCCTCACTTACAACGGTGCAACATTCACGAT 2132
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1793 TACTGGAACATACATGTACCTTACCATCACCCTTACTTACAACGCTGCAACATTCACGAT 1852
Query 2133 TGATTTTTTGAAACAAGTTACCAC 2156
||||||||| ||||||||||||||
Sbjct 1853 TGATTTTTT-AAACAAGTTACCAC 1875
> Ahg470701 jgi|Araly1|470701|fgenesh2_kg.1__655__AT1G06780.1
Length=2120
Score = 1166 bits (631), Expect = 0.0
Identities = 1243/1531 (81%), Gaps = 72/1531 (5%)
Strand=Plus/Plus
Query 645 AATAATCAC-AAACCAAAGGAGGAACAA--G-CAGTTTCACAGAAAACCACAGTAAGCTC 700
||||||||| ||| | | ||| |||||| | |||||||||||| | ||||| |||||
Sbjct 544 AATAATCACAAAAAC-AGGGAAGAACAAGTGATAGTTTCACAGAAGATGACAGTTAGCTC 602
Query 701 -GAATGCGGA-GGTGAAAATTTC-AGCAAGAGAT-ATTCAACTTAATCATAAAACGGAAT 756
| ||| | ||| ||| ||| | ||| || | | |||||| | ||||||||| ||
Sbjct 603 TG-ATGAAAAGGGT-CAAA-TTCTACCAACAG-TCAACCAACTTGCTAATAAAACGG-AT 657
Query 757 TCCGA-CCCCCTTCAAGTAAGAGTGAAAAGAATACAAGGGTTCAACTTGAA-AGAGCAAC 814
| | | ||||||| | |||| |||||||||| ||||||||||| | || ||||||||
Sbjct 658 TTCAAGCCCCCTTTATCTAAGGGTGAAAAGAACACAAGGGTTCAGC-CCAATAGAGCAAC 716
Query 815 AGATGAGAGGGTAAAGGAGATCAGAGACAAAATTATCCAAGCGAAAGCCTATCTGAATTT 874
||||| || ||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 717 AGATGTGAAAATAAAGGAGATCAGAGACAAAATTATTCAAGCTAAAGCCTACCTGAATTT 776
Query 875 GGCCCTACCTGGGAA-TAACTCCCAAATCGTAAAGGAGTTGAGAGTTCGAACGAAAGAGC 933
|| ||||| |||| |||||| ||||| || | ||| ||||||| ||| ||||||||||
Sbjct 777 CGCTCTACC-CGGAAGTAACTCTCAAATTGTGAGGGACTTGAGAGGTCGGACGAAAGAGC 835
Query 934 TGGAACGGGCTACTGGTGATACTACCAAGGATAAATATTTGCCAAAGAGCTCTCCTAACA 993
|||||||| || ||| ||| | || |||||||| | || ||||| || ||| | ||
Sbjct 836 TGGAACGGTCTGTTGGGGATGCAACAAAGGATAAGGACTTATCAAAGGGCGCTCTTCGCA 895
Query 994 GATTGAAGGCCATGGAAGTTGCGTTATACAAGGTC-AGCCGTGCCTTTCACAACTGCCCT 1052
| ||||| |||||||| || ||||||||||| | || |||| |||| |||| ||||||
Sbjct 896 GGGTGAAGCCCATGGAAAATGTGTTATACAAGG-CTAGTCGTGTCTTTAACAATTGCCCT 954
Query 1053 GCCATTGCTACCAAACTCCAAGCCATGACTTATAAAACCGAAGAACAAGCTCGGGCGCAG 1112
||||||||||||||||||| ||||||| |||||| || |||||||||| || |||||||
Sbjct 955 GCCATTGCTACCAAACTCCGTGCCATGAATTATAACACAGAAGAACAAGTTCAGGCGCAG 1014
Query 1113 AAGAAA-CAAGCAGCATATTTAATGCAGCTTGCAGCAAGGACTACCCCAAAAGGGCTTCA 1171
|| ||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1015 AA-AAATCAAGCAGCATATCTAATGCAGCTTGCAGCAAGGACCACCCCAAAAGGGCTTCA 1073
Query 1172 TTGTCTCTCAATGCGGTTGACAACAGAATA-TTTTACCCTGGATCAC-GAAAAAAGGC-- 1227
||||||||||||||| ||||| ||||||| || | | ||||||| | ||||||||||
Sbjct 1074 CTGTCTCTCAATGCGGCTGACATCAGAATACTTCT-CACTGGATC-CTGAAAAAAGGCAG 1131
Query 1228 A-GCTTTTGCAACAAAGTTATAATGATCCTGATCTCTACCATTACGTAGTCTTCTCTGAC 1286
| || | || |||| |||| |||| ||| || || ||||||| || ||||||||||||
Sbjct 1132 ATGCCTAACCAGCAAAATTATTATGACCCTAATTTCAACCATTATGTTGTCTTCTCTGAC 1191
Query 1287 AATGTTTTGGCCTCTTCGGTTGTTGTTAACTCTACAATCTCCTCATCAAAGGAACCGGAT 1346
||||||||||| ||||| ||||||||||||||||| || || || |||||||| |||||
Sbjct 1192 AATGTTTTGGCTTCTTCAGTTGTTGTTAACTCTACGATATCTTCTTCAAAGGAGCCGGA- 1250
Query 1347 AA-AATAGTATTCCATGTGGTGACAGATTCACTCAATTACCCAGCAATCTCAATGTGGTT 1405
|| |||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1251 AAGAATAGTCTTCCATGTCGTGACTGATTCACTTAATTACCCAGCAATCTCAATGTGGTT 1310
Query 1406 TTTACT-AA-A-CCCAAGTGGCAGAGCTTCAATCCAAATCCTAAACATTGATGAAATGAA 1462
| | || || | | |||| || ||| | ||||||||||| ||||||||||| ||| |
Sbjct 1311 TCTGCTAAATATTCAAAGT---AGGGCTACCATCCAAATCCTCAACATTGATGATATGGA 1367
Query 1463 TGTCCTGCCATTGTA-C-CATGCTGAATTGCTGATGAAGCAAAATTC-AAGTGACCCAAG 1519
|||||| || | | | ||| | ||||||||||||||||||| || || |||||||||
Sbjct 1368 TGTCCTACC--TCCAGCTTATGATCAATTGCTGATGAAGCAAAACTCTAA-TGACCCAAG 1424
Query 1520 AATCATTTCAGCGCTCAACCATGCACGCTTCTATCTCCCAGATATCTTCCCAGGTCTAAA 1579
| ||||||| | ||||| || |||||||||||||| || ||||| ||||| ||| | ||
Sbjct 1425 ATTCATTTCTCCCCTCAATCACGCACGCTTCTATCTGCCGGATATATTCCCGGGTTTGAA 1484
Query 1580 CAAGATCGTACTCTTCGATCATGATGTAGTAGTGCAAAGGGATCTAACTAGACTGTGGAG 1639
||||||||||||||| || |||||||||||||| ||||| ||| ||| ||||||||||||
Sbjct 1485 CAAGATCGTACTCTTTGACCATGATGTAGTAGTTCAAAGAGATTTAAGTAGACTGTGGAG 1544
Query 1640 CCTTGATATGACGGGGAAA-GTTGTTGGAGCTGTAGAGACTTGTCTTGAAGGTGA-TCCT 1697
||||||||| ||||| || |||||||||||||||||||||||||||||||| || |
Sbjct 1545 TATTGATATGA-AAGGAAAGGTGGTTGGAGCTGTAGAGACTTGTCTTGAAGGTGAATC-T 1602
Query 1698 TCATATCGTTCGATG-GACTCATTCATTAATTTCTCAGATGCATGGGTTTCTCAGAAATT 1756
|||| ||| || ||| | | |||| |||||||||||||| ||||||| || ||||||
Sbjct 1603 TCATTTCGATCAATGAG-CACATTTATTAATTTCTCAGACACATGGGTCGCTGGGAAATT 1661
Query 1757 T-GATCCCA-AGGCTTGCACTTGGGCATTCGGGATGAATCTATTTGATCTCGAAGAATGG 1814
| | ||| | || ||||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct 1662 TAG-TCCTAGAG-CTTGCACATGGGCGTTCGGGATGAATCTAATTGATCTCGAAGAATGG 1719
Query 1815 AGAAGACAGGA-GTTGACTTCTGTATACCTGAAATACTTCGACCTGGGAGTAAA-AGGAC 1872
|||| || ||| |||||||||| ||| | ||||||||| |||||||| ||| || ||
Sbjct 1720 AGAATAC-GGAAGTTGACTTCTACGTACATAAAATACTTCAACCTGGGAACAAAGAG-AC 1777
Query 1873 -ATCTGTGGAAAGCAGGGGGATTGCCAGTAGGTTGGTTGACTTTTT-TCGGGCAAACGTT 1930
|| |||||||||| ||| | || ||| |||||||||||||||| | | || ||||| ||
Sbjct 1778 CAT-TGTGGAAAGCTGGGAGCTTACCAATAGGTTGGTTGACTTTCTATAGG-CAAACATT 1835
Query 1931 TCCGTTGGAAAAGAGATGGAACGTGGGTGGGT-TAGGTCACGAATCAGGACTCAGGGCAA 1989
| ||||| ||||||||| | ||| |||| |||||| |||||||||| ||| ||
Sbjct 1836 AGCATTGGACAAGAGATGGCATGTGA-TGGGGCTAGGTCGCGAATCAGGAATCAAAGCG- 1893
Query 1990 GC-GACATCGAACAAGCAGCGGTTATACACTACGACGG-GATCATGAAACCATGGCTGGA 2047
| |||||||||||||| ||||||||||||||||| || | | ||||| || ||| ||||
Sbjct 1894 GTTGACATCGAACAAGCGGCGGTTATACACTACGATGGAGTT-ATGAAGCCGTGGTTGGA 1952
Query 2048 CATCGGTATAGACAAGTACAAGCGCTACTGGAACATACATGTACCTTACCATCAC-CCTC 2106
||| || | ||| || ||||| || |||||||||||||| || |||||||||||| |||
Sbjct 1953 CATTGGAAAAGAGAATTACAAACGTTACTGGAACATACACGTCCCTTACCATCACACCT- 2011
Query 2107 ACTTACAACGGTGCAA-CATTCACGATTGAT 2136
|||| |||| |||||| | |||| | |||||
Sbjct 2012 ACTTGCAACAGTGCAATC-TTCAAGCTTGAT 2041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86693397620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5