BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30580.1
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933560 jgi|Araly1|933560|scaffold_401548.1 2097 0.0
Ahg919392 jgi|Araly1|919392|scaffold_100673.1 435 8e-121
> Ahg933560 jgi|Araly1|933560|scaffold_401548.1
Length=1304
Score = 2097 bits (1135), Expect = 0.0
Identities = 1246/1301 (96%), Gaps = 2/1301 (0%)
Strand=Plus/Plus
Query 424 AAAGGAGTCGTTAAGAGAGCAATGGAAGGAGACATGGTGGCTAAAGTGAAGAGAGAAACG 483
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAGAGTCGTTAAGAGAGCAATGGAAGGAGACATGGTGGCTAAAGTGAAGAGAGAAACG 60
Query 484 GTGGTGGCATGCATGACTTGTCCTCTCTGTGACAAACTCCTCCGTGACGCCACTACCATT 543
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GTGGTGGCATGCATGACTTGCCCTCTCTGTGAGAAACTCCTCCGTGACGCCACTACCATT 120
Query 544 TCAGAGTGTCTTCACACGTTTTGTAGGAAATGCATTTATGAGAAAATCACAGAGGATGAG 603
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 TCTGAGTGTCTTCACACGTTTTGTAGAAAATGCATATATGAGAAAATCACAGAGGATGAG 180
Query 604 ATAGAGAGCTGTCCAGTATGCGATATTGACCTCGGGGGTACCCCACTGGAGAAACTAAGG 663
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATAGAGTGCTGTCCAGTATGCGATATTGACCTCGGGGGTACCCCACTGGAGAAACTAAGG 240
Query 664 CCTGACCACATTTTGCAAGACTTGAGAGCCAAATTATTTCCTCTAAAACGTAAAAAG-GA 722
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || ||
Sbjct 241 CCTGACCACATTTTGCAAGATTTGAGAGCCAAATTATTTCCTCTAAAACG-AAAGAGAGA 299
Query 723 GAGAGCGCCTGAAGTTGTGTCCTCCATCTCATTACCTGCAAAGAGGAAGGAGAGGTCTAT 782
||| |||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||||
Sbjct 300 GAGGGCGCCTGAAGTTGTTTCCTCCATCACATTACCTGCAAGGAGGAAGGAAAGGTCTAT 359
Query 783 CTCGTCTTTGGTGGTAAGCACACCCAGGGTTTCAGCACAAGCTGGTACAACAGGAAAAAG 842
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 CTCGTCTTTGGTGGTAAGCACACCTAGGGTTTCAGCACAAGCTGGTACAACAGGAAAAAG 419
Query 843 AACAAAAGCTGCTACGAGAAAAGATGTAAGAGGTAGTGGTTCATTCACTAAGAGAACAGT 902
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 420 AACAAAAGCTGCTACGAGAAAAGATGTACGAGGTAGTGGCTCATTCACTAAGAGAACAGT 479
Query 903 GAAGAAGGAAGAAGAATTTGGAGATGATCATGTAGAGAGCGCAAGCTCGCCTGAAACACT 962
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 480 GAAGAAGGAAGAAGAATTTGGAGATGATCATATAGAGAGCGCAAGCTCGCCTGAAACAGT 539
Query 963 TAAAAAGTTTACTCAGAATAAAAGACAGTCTTCATATGCAAATCCTAACCAGTCCCTCTC 1022
|||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct 540 TAAAAAGTTTACTCAGAATAAAAGGCAGTCTTCATATGCAGAGCCTAACCAGTCCCTCTC 599
Query 1023 TAATCGAAGAAACAAGGATGTTGATGAACCATGGGATTCCAAATTACATCTTTGGAAACC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAATCGAAGAAACAAGGATGTTGATGAACCATGGGATTCCAAATTACATCTTTGGAAACC 659
Query 1083 TCTAAATTTTCTTGTGGATGTGGCAAACGGAACAAAGGACCCAAAATCTGAGCTTGGAAA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 TCTAAATTTTCTTGTGGATGTGGCAAACGGAACAAAGGACCCAAAATCTGAGCATGGAAA 719
Query 1143 CGCATCCCACAATGATGTTCAGGGGAGTAAAACCAAAACAAAGGATCATAAAAGAAAGTG 1202
||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TGCATCTCTCAATGATGTTCAGGGGAGTAAAACCAAAACAAAGGATCATAAAAGAAAATG 779
Query 1203 TAAACTCGAGGAAGAGATCAGCAATAACGGTGATCCTACAACATCAGAAACTGCTACACT 1262
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TAAACTTGAGGAAGAGATCAGCAATAACGGTGATCCTACAACATCAGAAACTGCTACACT 839
Query 1263 TAAACGAACGCGTCGGACTCGTCGCAAAAGGTCATCTACTTTTGGTGATTCTAGAATTCC 1322
|||| |||||||| ||||||| |||||||||||||| | |||||| ||||| ||||||||
Sbjct 840 TAAAGGAACGCGTAGGACTCGCCGCAAAAGGTCATCCAATTTTGGGGATTCAAGAATTCC 899
Query 1323 ACTGTTACCAGGTGCAGCAAGCCTAAAACAGGAGAGGAGAAACGGTCATGTTTGGTTCTC 1382
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 ACCATTACCAGGTGCAGCAAGCCTAAAACAGGAGAGGAGAAATGGTCATGTTTGGTTCTC 959
Query 1383 ACTTGTAGCGTCAAGTAATCAGGAAGGAGAAGCATCATTGCCTCAGATTCCAGCAAACTA 1442
|||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 ACTTGTGGCTTCAAATAATCAGGAAGGAGAAGCATCCTTGCCTCAGATTCCAGCAAACTA 1019
Query 1443 CTTGAGAATAAGGGATGGAAATATTCCAGTTTCTTTTATCCAAAAGTACCTCATGAGGAA 1502
||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1020 CTTGAGAATAAAGGATGGAAATATTCCAGTTTCGTTTATCCAAAAGTACCTTATGAGGAA 1079
Query 1503 GCTTGATCTCAAGAGTGAAGATGAGGTAGAGATAACATGTATGGGAGAACCAGTGATCCC 1562
|||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1080 GCTTGACCTCAAGAGTGAAGCTGAGGTAGAGATAAAATGTATGGGAGAACCAGTGATCCC 1139
Query 1563 AACGTTGCAGCTTCACAGCTTAGTAGACCTATGGTTGGAAACAACTTCTAAGCATCAAAG 1622
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 AACGTTGCAGCTTCACAGCTTAGTAGAGCTATGGTTGGAAACAACTTCTAAGCATCAAAG 1199
Query 1623 AGTCGCTGCGTCAATAGGTTCATCTGCAAAGGAATTTGTAATGGTGCTAGTTTATTCTCG 1682
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGTCGCTGCGTCAATAGGTTCCTCTGCAAAGGAATTTGTAATGGTGCTAGTTTATTCTCG 1259
Query 1683 GAAGCTCCCTGAATGCAACAACTAAAGAGCTATTCATTGAA 1723
|||||||||||||||||||||||||||| ||| |||||||
Sbjct 1260 GAAGCTCCCTGAATGCAACAACTAAAGAATTATACATTGAA 1300
> Ahg919392 jgi|Araly1|919392|scaffold_100673.1
Length=1367
Score = 435 bits (235), Expect = 8e-121
Identities = 488/605 (81%), Gaps = 38/605 (6%)
Strand=Plus/Plus
Query 1124 CAAAATCTGAGCTTG-GAAACGCATCCCACAAT-GATGTTCAGGGGAGTAAAACCAAAAC 1181
|||||||||||| | | || ||||| |||||| || |||| ||||||||||||||||
Sbjct 703 CAAAATCTGAGCACGCG-AATGCATCTCACAATCAAT-TTCAAGGGAGTAAAACCAAAAT 760
Query 1182 AAAGGATCATAAAAGAAAGTGTAAAC-TCGAGGAAGAGATCAGCAATAACGGTGATCCTA 1240
|||||| | |||||||| ||||||| | ||||| || | || | ||| ||| ||||||
Sbjct 761 TAAGGATAAAAAAAGAAAATGTAAACGT-GAGGATGA-A-AAG-AGTAATGGTAATCCTA 816
Query 1241 CAACATCAGAAACTGCTACACTTAAACGAACGCGT-CGGACTCGTCGCAAAAGG--T--C 1295
||||||||||||||||||| | ||| ||| |||| | |||| ||||||||| | |
Sbjct 817 CAACATCAGAAACTGCTACTCCGAAAAGAATGCGTAC-AACTCAACGCAAAAGGTCTGCC 875
Query 1296 ATCTACTTTTGGTGATTCTAG-AA-TT-CCACTGTTACCAGGTGCAG-CAAG-CCTAAAA 1350
| | ||||| || ||||| || || || |||| |||||| || || |||| | ||||
Sbjct 876 A-CCACTTTAGGCGATTCAAGAAATTTGCCAC---TACCAGATG-AGTCAAGTGC-AAAA 929
Query 1351 CAGGAGAGGAGAAACGGTCATGTTTGGTTCTCACTTGTAGCGTCAAGTAATCAGGAAGGA 1410
|||||||||||||| |||| ||||||||||||||||| ||||| ||| |||||||||||
Sbjct 930 CAGGAGAGGAGAAATGGTCCCGTTTGGTTCTCACTTGTGGCGTCCAGTGATCAGGAAGGA 989
Query 1411 -GAAGCATCATTGCCTCAGATTCCAGCAAACTACTTGAGAATAAGGGATGGAAATATTCC 1469
||| | || || ||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 990 GGAA-CTTCTTTACCTCAAATTCCAGCAAATTTTTTGAGAATAAGGGATGGAAATATTCC 1048
Query 1470 AGTTTCTTTTATCCAAAAGTACCTCATGAGGAAGCTTGATCTCAAGAGTGAAGA-TGAGG 1528
||||||||| |||||||||||||||||||||||||| |||||| |||||||| | ||||
Sbjct 1049 AGTTTCTTTCATCCAAAAGTACCTCATGAGGAAGCTAGATCTCGAGAGTGAA-ACTGAGA 1107
Query 1529 TAGAGATAACATGTATGGGAGAACCAGTGATCCCAACGTTG-CAGCTTCACAGCTTAGTA 1587
||||| ||| |||||||||||| |||||||||| ||| || | |||||||| ||||
Sbjct 1108 TAGAGGTAAGGTGTATGGGAGAAGCAGTGATCCCGACGCTGAC-GCTTCACAAAGTAGTG 1166
Query 1588 GACCTATGGTTGGA-AACAACTTCTAAGCATCAAAGAGTC-GCTGCGTCAATAGGTTCAT 1645
|| |||||| || | || || ||| ||||| ||| | || ||||| || |||||||| |
Sbjct 1167 GATCTATGGCTGCAGAA-AAGTTCAAAGCACCAACG-GTTTGCTGCATCGATAGGTTCCT 1224
Query 1646 CTGCAAAGGAATTTGTAATGGTGCTAGTTTATTCTCGGAAGCTCCCTGA-A-TGCAACAA 1703
| |||||||| ||| | |||||||| | ||| |||||||||| || || | ||||||||
Sbjct 1225 CCGCAAAGGATTTTATGATGGTGCTTGACTATGCTCGGAAGCTACCAGAGAGTGCAACAA 1284
Query 1704 CTAAA 1708
||||
Sbjct 1285 GTAAA 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75380594855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5