BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30590.1
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933561 jgi|Araly1|933561|scaffold_401549.1 1014 0.0
> Ahg933561 jgi|Araly1|933561|scaffold_401549.1
Length=1153
Score = 1014 bits (549), Expect = 0.0
Identities = 624/659 (95%), Gaps = 10/659 (2%)
Strand=Plus/Plus
Query 920 cagcagcagcagcagcagcaacagcaacagTTTCATGAACGGTTACAAGCTCACCATCTT 979
||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 495 CAGCAACAACAGCAGCAGCAACAG---CAGTTTCATGAACGGTTACAAGCTCACCATCTT 551
Query 980 CATCAGCAACAGCAGCTACAGAAACATCAAGCTGAGCTTATGCTTAGGAAATGCAATGGT 1039
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CATCAGCAGCAGCAGCTGCAGAAACATCAAGCTGAGCTTATGCTTAGGAAATGCAATGGT 611
Query 1040 GGGATAAGTTTGAGTTTCGATAACTCTAGTTGTACTCCAACTATGTCATCCACTAGGTCC 1099
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 612 GGGATAAGTTTGAGTTTCGATAACTCGAGTTGTACTCCAACCATGTCATCTACTAGGTCC 671
Query 1100 TTTGTTTCTTCACTTAGCATAGATGGTAGTGTTGCTAATATAGAGGGAAAGAACTCCTTC 1159
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 672 TTTGTTTCTTCACTTAGCATAGATGGTAGTGTTGCTAACATAGAAAGAAAGAACTCGTTT 731
Query 1160 CATTT--T-GGGGTTCCTAGTTCAACTGATCAGAATTCACTACATTCTAAGAGGAAATG- 1215
||||| | |||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 732 CATTTGGTTGGGGTTCCGAGTTCAACGGATCAGAATTCACTACACTCTAAGAGGAAATGT 791
Query 1216 CCCCTTGAAAGGAGATGAACATGGAAGCTTAAAATGCGGGAGCTCTAGCCGATGCCACTG 1275
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 792 CCCCT-GAAAGGAGATGAACATGGAGGCTTAAAATGCGGGAGCTCTAGCCGATGCCACTG 850
Query 1276 CGCTAAGAAGAGGAAACATCGGGTTAGGAGATCGATTAGAGTACCGGCTATAAGTAACAA 1335
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 851 CACTAAGAAGAGGAAACATCGGGTTAGGAGATCGATCAGAGTACCGGCTATAAGTAACAA 910
Query 1336 GGTTGCAGATATCCCTCCTGATGATTATTCATGGCGAAAATATGGTCAGAAGCCCATCAA 1395
|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 911 GGTTGCAGATATTCCTCCTGATGATTATTCGTGGCGAAAATATGGTCAGAAACCCATCAA 970
Query 1396 GGGCTCTCCTTATCCCAGAGGATATTACAAATGTAGTAGCATGAGAGGTTGTCCAGCGAG 1455
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 971 AGGCTCTCCTTATCCCAGGGGATATTACAAATGCAGTAGCATGAGAGGTTGTCCAGCGAG 1030
Query 1456 GAAGCATGTTGAGAGATGTTTGGAAGATCCGGCAATGCTTATTGTTACTTATGAAGCAGA 1515
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1031 GAAGCATGTTGAGAGATGTTTGGAAGATCCGGCAATGCTTATCGTTACTTATGAAGCAGA 1090
Query 1516 GCATAACCACCCGAAATTGCCATCTCAAGCTATAACAACTTAACTCTCGTTT-ATCTTT 1573
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1091 GCATAACCACCCGAAATTGCCATCTCAAGCTATAACAACTTAACTCTC-TTTCATCTTT 1148
Score = 719 bits (389), Expect = 0.0
Identities = 467/504 (93%), Gaps = 8/504 (2%)
Strand=Plus/Plus
Query 414 AGATGGAGGAGATAGAAGGAACAAACAGAGCAGCTGTTGAGAGTTGTCATAGAGTTCTTA 473
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 19 AGATGGAGGAGATAGAAGGAACAAACAGAGCAGCTGTAGAGAGTTGTCATAGAGTTCTTA 78
Query 474 ATCTTTTACATAGATCACAGCAACAAGATCATGTTGGTTTTGAAAAGAATTTAGTATCTG 533
|||||||||| ||| |||| |||||||||| |||||| ||||| | || ||| || ||||
Sbjct 79 ATCTTTTACAAAGACCACAACAACAAGATCGTGTTGGGTTTGACAGGACTTTGGTGTCTG 138
Query 534 AAACTAGAGAAGCTGTGATTAGGTTCAAGAGAGTTGGGAGTTTGTTAAGCAGTAGTGTTG 593
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 139 AAACTAGAGAAGCTGTGATTAGGTTCAAGAGAGTTGGGAGTTTGTTAGGCAGTAGTGTGG 198
Query 594 GTCATGCTAGGTTTAGAAGAGCTAAGAAACTTCAGAGTCATGT-CTCTCAAAGTCTCTTA 652
||||||||||||||||||||||||||||| |||||| | || | | ||||||| |||||
Sbjct 199 GTCATGCTAGGTTTAGAAGAGCTAAGAAAGTTCAGACTAATTTGC-CTCAAAGCCTCTTT 257
Query 653 CTTGATCCATGTCAACAAAG---GACAACAGAAGTTCCATCATCATCTTCTCAGAAAACA 709
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 258 GTTGATCCATGTCAACAAAGAACTACAACAGAAGTTCCATCATCATCGTCTCAGAAAACA 317
Query 710 CCGGTACTCCGGTCTGGTTTCCAGGAATTGAGCTTGAGACAACCTTCAGATTCA-C--TC 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 318 CCGGTACTCCGGTCTGGTTTCCAGGAATTGAGCTTGAGACAACCTTCAGATTCATCACTC 377
Query 767 ACTTTAGGGACTCGCTCTTTTAGTTTAAACTCAAATGCTAAAGCTCCTCTCCTTCAGCTT 826
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 378 ACTTTAGGGACTCGCTCTTTCAGTTTAAACTCAAATGCTAAAGCTCCTCTCCTTCAGCTT 437
Query 827 AATCAGCAGACAATGCCTCCTTCGAATTATCCTACTTTGTTTCCAGTacaacaacaacaa 886
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AACCAGCAGACAATGCCTCCTTCGAATTATCCTACTTTGTTTCCAGTACAACAACAACAG 497
Query 887 caacaacaacaacaacaacaacag 910
|||||||| || || ||||| |||
Sbjct 498 CAACAACAGCAGCAGCAACAGCAG 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69400426390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5