BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30590.1 Length=1848 Score E Sequences producing significant alignments: (Bits) Value Ahg933561 jgi|Araly1|933561|scaffold_401549.1 1014 0.0 > Ahg933561 jgi|Araly1|933561|scaffold_401549.1 Length=1153 Score = 1014 bits (549), Expect = 0.0 Identities = 624/659 (95%), Gaps = 10/659 (2%) Strand=Plus/Plus Query 920 cagcagcagcagcagcagcaacagcaacagTTTCATGAACGGTTACAAGCTCACCATCTT 979 ||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 495 CAGCAACAACAGCAGCAGCAACAG---CAGTTTCATGAACGGTTACAAGCTCACCATCTT 551 Query 980 CATCAGCAACAGCAGCTACAGAAACATCAAGCTGAGCTTATGCTTAGGAAATGCAATGGT 1039 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 552 CATCAGCAGCAGCAGCTGCAGAAACATCAAGCTGAGCTTATGCTTAGGAAATGCAATGGT 611 Query 1040 GGGATAAGTTTGAGTTTCGATAACTCTAGTTGTACTCCAACTATGTCATCCACTAGGTCC 1099 |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| Sbjct 612 GGGATAAGTTTGAGTTTCGATAACTCGAGTTGTACTCCAACCATGTCATCTACTAGGTCC 671 Query 1100 TTTGTTTCTTCACTTAGCATAGATGGTAGTGTTGCTAATATAGAGGGAAAGAACTCCTTC 1159 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || Sbjct 672 TTTGTTTCTTCACTTAGCATAGATGGTAGTGTTGCTAACATAGAAAGAAAGAACTCGTTT 731 Query 1160 CATTT--T-GGGGTTCCTAGTTCAACTGATCAGAATTCACTACATTCTAAGAGGAAATG- 1215 ||||| | |||||||| |||||||| ||||||||||||||||| |||||||||||||| Sbjct 732 CATTTGGTTGGGGTTCCGAGTTCAACGGATCAGAATTCACTACACTCTAAGAGGAAATGT 791 Query 1216 CCCCTTGAAAGGAGATGAACATGGAAGCTTAAAATGCGGGAGCTCTAGCCGATGCCACTG 1275 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 792 CCCCT-GAAAGGAGATGAACATGGAGGCTTAAAATGCGGGAGCTCTAGCCGATGCCACTG 850 Query 1276 CGCTAAGAAGAGGAAACATCGGGTTAGGAGATCGATTAGAGTACCGGCTATAAGTAACAA 1335 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 851 CACTAAGAAGAGGAAACATCGGGTTAGGAGATCGATCAGAGTACCGGCTATAAGTAACAA 910 Query 1336 GGTTGCAGATATCCCTCCTGATGATTATTCATGGCGAAAATATGGTCAGAAGCCCATCAA 1395 |||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 911 GGTTGCAGATATTCCTCCTGATGATTATTCGTGGCGAAAATATGGTCAGAAACCCATCAA 970 Query 1396 GGGCTCTCCTTATCCCAGAGGATATTACAAATGTAGTAGCATGAGAGGTTGTCCAGCGAG 1455 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 971 AGGCTCTCCTTATCCCAGGGGATATTACAAATGCAGTAGCATGAGAGGTTGTCCAGCGAG 1030 Query 1456 GAAGCATGTTGAGAGATGTTTGGAAGATCCGGCAATGCTTATTGTTACTTATGAAGCAGA 1515 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1031 GAAGCATGTTGAGAGATGTTTGGAAGATCCGGCAATGCTTATCGTTACTTATGAAGCAGA 1090 Query 1516 GCATAACCACCCGAAATTGCCATCTCAAGCTATAACAACTTAACTCTCGTTT-ATCTTT 1573 |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1091 GCATAACCACCCGAAATTGCCATCTCAAGCTATAACAACTTAACTCTC-TTTCATCTTT 1148 Score = 719 bits (389), Expect = 0.0 Identities = 467/504 (93%), Gaps = 8/504 (2%) Strand=Plus/Plus Query 414 AGATGGAGGAGATAGAAGGAACAAACAGAGCAGCTGTTGAGAGTTGTCATAGAGTTCTTA 473 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 19 AGATGGAGGAGATAGAAGGAACAAACAGAGCAGCTGTAGAGAGTTGTCATAGAGTTCTTA 78 Query 474 ATCTTTTACATAGATCACAGCAACAAGATCATGTTGGTTTTGAAAAGAATTTAGTATCTG 533 |||||||||| ||| |||| |||||||||| |||||| ||||| | || ||| || |||| Sbjct 79 ATCTTTTACAAAGACCACAACAACAAGATCGTGTTGGGTTTGACAGGACTTTGGTGTCTG 138 Query 534 AAACTAGAGAAGCTGTGATTAGGTTCAAGAGAGTTGGGAGTTTGTTAAGCAGTAGTGTTG 593 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 139 AAACTAGAGAAGCTGTGATTAGGTTCAAGAGAGTTGGGAGTTTGTTAGGCAGTAGTGTGG 198 Query 594 GTCATGCTAGGTTTAGAAGAGCTAAGAAACTTCAGAGTCATGT-CTCTCAAAGTCTCTTA 652 ||||||||||||||||||||||||||||| |||||| | || | | ||||||| ||||| Sbjct 199 GTCATGCTAGGTTTAGAAGAGCTAAGAAAGTTCAGACTAATTTGC-CTCAAAGCCTCTTT 257 Query 653 CTTGATCCATGTCAACAAAG---GACAACAGAAGTTCCATCATCATCTTCTCAGAAAACA 709 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 258 GTTGATCCATGTCAACAAAGAACTACAACAGAAGTTCCATCATCATCGTCTCAGAAAACA 317 Query 710 CCGGTACTCCGGTCTGGTTTCCAGGAATTGAGCTTGAGACAACCTTCAGATTCA-C--TC 766 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 318 CCGGTACTCCGGTCTGGTTTCCAGGAATTGAGCTTGAGACAACCTTCAGATTCATCACTC 377 Query 767 ACTTTAGGGACTCGCTCTTTTAGTTTAAACTCAAATGCTAAAGCTCCTCTCCTTCAGCTT 826 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 378 ACTTTAGGGACTCGCTCTTTCAGTTTAAACTCAAATGCTAAAGCTCCTCTCCTTCAGCTT 437 Query 827 AATCAGCAGACAATGCCTCCTTCGAATTATCCTACTTTGTTTCCAGTacaacaacaacaa 886 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 438 AACCAGCAGACAATGCCTCCTTCGAATTATCCTACTTTGTTTCCAGTACAACAACAACAG 497 Query 887 caacaacaacaacaacaacaacag 910 |||||||| || || ||||| ||| Sbjct 498 CAACAACAGCAGCAGCAACAGCAG 521 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69400426390 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5