BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30620.1
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481979 jgi|Araly1|481979|fgenesh2_kg.4__1039__AT2G30620.1 1373 0.0
> Ahg481979 jgi|Araly1|481979|fgenesh2_kg.4__1039__AT2G30620.1
Length=1407
Score = 1373 bits (743), Expect = 0.0
Identities = 958/1054 (91%), Gaps = 46/1054 (4%)
Strand=Plus/Plus
Query 430 ATGTCTATAGAGGAAGAAAACGTTCCAACGACTGTTGACTCAGGAGCTGCCGATACAACG 489
||||| | ||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 391 ATGTCAACAGAAGAAGAAAACGTTCCAACGACTGTTGAATCAGGAGCTGCTGATACAACG 450
Query 490 GTGAAATCTCCGGAGAAGAAACCGGCGGCGAAAGGTGGTAAATCTAAGAAGACGACGACG 549
|||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||
Sbjct 451 GTGAAAGCTCCGGAGAAGAAACCGACGGCGAAAGGTGGTAAATCTAAGAA-A--ACGA-- 505
Query 550 GCTAAAGCAACGAAGAAGCCTGTGAAAGCTGCTGCTCCAACGAAGAAGAAAACAACTTCC 609
| | ||||||||||| ||||||||||||||||| ||||| |||||||| ||||
Sbjct 506 -C----G--ACGAAGAAGCCGGTGAAAGCTGCTGCTCCGACGAAAAAGAAAACTTCTTCT 558
Query 610 TCTCACCCTACCTATGAAGAGATGATTAAAGATGCGATTGTAACGTTGAAGGAGAGAACT 669
||||||||| ||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 559 TCTCACCCTCCCTATGAAGAGATGATTAAGGACGCTATAGTAACGTTGAAGGAGAGAACT 618
Query 670 GGATCTAGTCAATACGCGATTCAGAAATTCATAGAGGAGAAACATAAATCACTGCCTCCT 729
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 619 GGATCTAGTCAATACGCGATTCAGAAATTCATAGAGGAGAAACACAAATCTCTTCCTCCT 678
Query 730 ACTTTTAGGAAGCTTTTGCTTGTGAATCTCAAGAGACTTGTTGCTTCTGAGAAATTGGTT 789
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 AATTTTAGGAAGCTTTTACTTGTGAATCTCAAGAGACTTGTTGCTTCTGAGAAATTGGTT 738
Query 790 AAAGTCAAAGCTTCTTTTAAGATTCCTTCTGCTAGATCCGCAGCAACACCTAAACCGGCT 849
||||||||||||||||| |||||||||||||||| |||||| || ||||||||||| |
Sbjct 739 AAAGTCAAAGCTTCTTTCAAGATTCCTTCTGCTAAATCCGCCGCTACACCTAAACC-G-- 795
Query 850 GCTCCGGTTAAGAAGAAGGCAACTGTAGTAGCTAAACCTAAGGGTAAGGTTGCTGCTGCT 909
||||||||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 796 GCTCCGGTTAAGAAGAAGGCAACTGTAGTAGCTAAACCTAAGGGTAA-G--G-T--TGC- 848
Query 910 GTTGCTCCTGCTAAAGCTAAAGCGGCGGCTAAAGGAACTAAGAAGCCTGCGGCTAAAGTT 969
|||||||| ||||||||||||||||||||||||||||||| | |||||| |
Sbjct 849 --TGCTCCTGTTAAAGCTAAAGCGGCGGCTAAAGGAACTAAG-A--------CTAAAGCT 897
Query 970 GTTGCTAAGGCTAAGG-T--TACTGCTAAACCTAAGGCTAAGGTTACTGCTGCTAAACCT 1026
||||||||| |||||| | ||||||||| |||||||||||||||||| |||||||||||
Sbjct 898 GTTGCTAAGCCTAAGGTTACTACTGCTAAGCCTAAGGCTAAGGTTACTACTGCTAAACCT 957
Query 1027 AAGTCTAAGTCTGTTGCTGCTGTTTCCAAGACTAAAGCTGTTGCTGCTAAGCCTAAGGCT 1086
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 958 AAGTCTAAGTCTGTTGCTGCTGTTTCAAAGACTAAAGCTGTTGCTGCTAAGCCTAAGGCT 1017
Query 1087 AAGGAGAGACCAGCTAAAGCTTCTAGGACTTCGACTAGAACATCTCCAGGGAAAAAAGTT 1146
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1018 AAGGAGAGACCAGCTAAAGCTTCTAGGACTTCGACTAGAACATCTCCTGGTAAAAAAGTT 1077
Query 1147 GCTGCTCCTGCTAAGAAAGTGGCTG-TG--ACTAAGAAGGCTCCGGCTAAGAGTGTGAAG 1203
|||||||||| ||||||||||| || || || |||||||| ||||||||||||||||||
Sbjct 1078 GCTGCTCCTGTTAAGAAAGTGGTTGCTGCGACGAAGAAGGCGCCGGCTAAGAGTGTGAAG 1137
Query 1204 GTGAAGTCTCCGGCGAAGAGAGCTTCGACTAGGAAGGCTAAGAAGTGAAGAAGATTGGTT 1263
| |||||||||||||||||||||||||||||||||| | ||||||||| |||||| ||||
Sbjct 1138 GCGAAGTCTCCGGCGAAGAGAGCTTCGACTAGGAAGACAAAGAAGTGAGGAAGATGGGTT 1197
Query 1264 TAGGATAGGTTTTGGGGGGAGATTGAATACATGGTGGTGGTTAGCTTCTATAGGGTAGTC 1323
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TAGGATAGGTTTGGGGGGGAGATTGAATACATGGTGGTGGTTAGCTTCTATAGGGTAGTC 1257
Query 1324 TTGTATAATTGAATCATCCTTGAAGGAGcttgctttccaaagttttttacttgttt-ctt 1382
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 1258 TTGTATAATTGAATCATCCTTGAAGGAGCTTGCTTTCCAAAGTTTTTTTCTT-TTTACTT 1316
Query 1383 tggtttcttcttgaaact-tttttttttct-tctttgtaagttttggtttgtttgaattt 1440
||||||||| |||||||| ||||||||| | |||| |||| |||||||||||||||||||
Sbjct 1317 TGGTTTCTTGTTGAAACTCTTTTTTTTT-TGTCTT-GTAATTTTTGGTTTGTTTGAATTT 1374
Query 1441 taagctttttgATCAATAGCTATAATGTGATGGT 1474
||||||||| ||||||||||||| |||||||||
Sbjct 1375 TAAGCTTTTA-ATCAATAGCTATATTGTGATGGT 1407
Score = 510 bits (276), Expect = 1e-143
Identities = 326/349 (93%), Gaps = 8/349 (2%)
Strand=Plus/Plus
Query 1 AATCGATTAAACACTCAAACAAAACCTTACAGAATTATCTACACAATGaaaaaaacaaaa 60
||||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 1 AATCGCTTAAACACTCAAACAAAACCTTAAAGAATTATCTACAAAACGAAAAAAACAAAA 60
Query 61 tcaaaatccataaagtaaacaaaaagttatgataaaatcaatcaaagctaaaagCACACC 120
| ||||| ||||||||||| ||||||||| ||||||||||||| |||| |||||||||||
Sbjct 61 TAAAAATTCATAAAGTAAAAAAAAAGTTACGATAAAATCAATCGAAGCAAAAAGCACACC 120
Query 121 -A-A-TACAATACACAAAAGCACCTATCCACATCCATTAACCTCCGCATCCTTACATTCG 177
| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 AACACAACAATACACAAAAGCACCTATCCACATCCATTAACCTCCTCATCCTTACATTCG 180
Query 178 TAATCCTAAATTATAAACCGTCGATAGATTTAAATCCAACGGTTGAAATTCAAACCTGAG 237
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TAATCCTTAATTATAAACCGTCGATAGATTTAAATCTAACGGTTGAAATTCAAACCTGAG 240
Query 238 TTGATACACCGATCCGAGTACTCATCATTTTAACCAATCAGAGAAGAGATTACAAACTCT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGATACACCGATCCGAGTACTCATCATTTTAACCAATCAGAGAAGAGATTACAAACTCT 300
Query 298 GTCTCATAAACACATCTGACTATATA-A-A--CATCATTCCCATAGTTC 342
||||||||| |||||||||||||||| | | |||||||||| ||||||
Sbjct 301 GTCTCATAA-CACATCTGACTATATATATAAACATCATTCCCGTAGTTC 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5