BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30660.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951654 jgi|Araly1|951654|scaffold_803541.1 1393 0.0
Ahg900847 jgi|Araly1|900847|Al_scaffold_0004_1497 1351 0.0
Ahg481983 jgi|Araly1|481983|fgenesh2_kg.4__1043__AT2G30650.1 1075 0.0
> Ahg951654 jgi|Araly1|951654|scaffold_803541.1
Length=1186
Score = 1393 bits (754), Expect = 0.0
Identities = 1026/1158 (89%), Gaps = 16/1158 (1%)
Strand=Plus/Plus
Query 9 ATGGCATCTCAATCTCAGGTTTTGGTGGAAGAGAAATCAAGTGTTAGAATTTTGACATTA 68
||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct 33 ATGGCCTCTCAGTCTCAGGTTTTGGTGGAAGAGAAATCGAGTGTTAGAATCTTGACACTA 92
Query 69 AACCGACCCAAGCAGCTTAATGCTCTGTGCTT-CAACATGATCTCTCGGTTGCTGCAACT 127
|| |||| |||||||| |||||||||| ||| ||| ||||||||||||||| |||||||
Sbjct 93 AATAGACCAAAGCAGCTGAATGCTCTGTCCTTCCAA-ATGATCTCTCGGTTGGTGCAACT 151
Query 128 ATTCCGTGCATATGAGGAAGACCCTAGTGTTAAACTTGTCATCCTAAAGGGTCAA-GGAA 186
|||| ||||| |||||| ||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 152 GTTCCTTGCATTTGAGGAGGACCCTAGTGTGAAACTTGTCATCCTAAAGGG-CAATGGAA 210
Query 187 GAGCCTTTTGTGCCGGTGGCGACGTTCCACCTGTTGTTCAAAACATGGTACAAGGTAAAT 246
||||||||||||| |||||||| ||| || ||||||||| |||| | ||||||||| |
Sbjct 211 GAGCCTTTTGTGCTGGTGGCGATGTTGCAGCTGTTGTTCGTGACATCGAACAAGGTAACT 270
Query 247 GGAGACTTGGTGCCGATTTCTTCAGAGATCAATACACGCTCAATTATGTTATGGCCACGT 306
||||||| |||||| |||||||| ||| |||||| |||||| |||||||||||||| |
Sbjct 271 GGAGACTCGGTGCCAATTTCTTCTCCGATGAATACATGCTCAACTATGTTATGGCCACAT 330
Query 307 ATAGCAAACCTCAGGTTTCAATTTTGAATGGTATTGTCATGGGAGCCGGTGCTGGTGTCT 366
|||||||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct 331 ATAGCAAAGCTCAGGTTTCAATTTTGAATGGTATCGTCATGGGAGGCGGAGCTGGTGTCT 390
Query 367 CCATCCATGGTCGATTTCGCATTGCAACTGAGAACACGGTTTTTGCCATGCCGGAGACAT 426
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 391 CCATCCATGGTCGATTTCGTATTGCAACTGAGAACACGGTTTTTGCCATGCCTGAGACAG 450
Query 427 CTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTATTTCCTGTCACGGCTCCCTGGATTTT 486
|||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct 451 CTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTACTTCTTGTCAAGGCTCCCTGGATTTT 510
Query 487 TTGGAGAGTATGTTGGCCTTACAGGAGCTAGGTTAGATGGCGCTGAATTGCTTGCGTGTG 546
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||
Sbjct 511 TTGGAGAGTATGTTGGCCTCACAGGAGCTAGATTAGATGGCGCTGAAATGCTTGCTTGTG 570
Query 547 GTCTTGCAACTCATTTTGTTCCTTCAACGAGGTTGACAGC-TCTAGAAACAGATCTTTGC 605
| ||||||||||||||||| ||||||||||||||||| || | |||||||||||||||||
Sbjct 571 GCCTTGCAACTCATTTTGTGCCTTCAACGAGGTTGACTGCAT-TAGAAACAGATCTTTGC 629
Query 606 AAAGTTGGGTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAGCAT 665
|||||| |||| |||||||| ||||| |||||||||||| |||||||||| ||||||
Sbjct 630 CGAGTTGGTTCAAATGATCCAACCTTTGCCTCAACAATTCTCAATGCATACACCCAGCAT 689
Query 666 CCGCACCTTAAACAGAAGAGTGCTTACCACAGGTTAGATGTTATCGATAGGTGCTTCTCG 725
|||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 690 CCGCGCCTGAAACAGCAGAGTGCTTACCACAGGTTAGATGTTATTGATAGGTGCTTCTCA 749
Query 726 AAGAGAACAATGGAAGAAATTATATCTGCACTTGAGAGAGAGACCACTCAAGAA-CTAGA 784
||||||||| | ||||| |||||||||||||||||||||||| ||||||||||| | |||
Sbjct 750 AAGAGAACAGTTGAAGAGATTATATCTGCACTTGAGAGAGAGGCCACTCAAGAAGC-AGA 808
Query 785 TGATTGGAGCTTAACTACGATTCGAGCTTTGAAGAAGTCTTCACCCTCAAGCCTTAAAAT 844
|| ||||| || | |||| |||| ||| ||||||||| ||||||| |||||||||||||
Sbjct 809 TGGTTGGATCTCAGCTACCATTCAAGCATTGAAGAAGGCTTCACCAGCAAGCCTTAAAAT 868
Query 845 ATCTCTTAGATCGATAAGAGAAGGAAGATTGCAAGGGGTAGGACACTGTCTTACCCGCGA 904
||||||||||||||||| ||||| || |||| ||||| || || ||||||| ||| ||
Sbjct 869 CTCTCTTAGATCGATAAGGGAAGGGCGACTGCAGGGGGTGGGGCAGTGTCTTATCCGTGA 928
Query 905 GTATAGAATGGTGTGTCATGTGATGAAGGGAGATTTAAGCAAAGACTTGGTGGAGGGGTG 964
||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||
Sbjct 929 GTATAGAATGGTGTGTCATGTGATGAAGGGAGAAATCAGCAAAGATTTTGTGGAGGGGTG 988
Query 965 CAGAGCCATATTGATAGACAAAGATAGGAATCCAAAGTGGGAGCCAAGGCGATTGGAGGA 1024
||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||
Sbjct 989 CAGAGCCATATTGGTAGACAAAGATAAGAACCCAAAGTGGGAGCCAAGGCGACTGGAGGA 1048
Query 1025 CATGAAGGATAGCATGGTAGATCAGTTCTTTGAGAGAGTGGAAGAAGAGGAGCGA-TGGG 1083
|||||| |||||||||||||| |||| ||| ||||||||||| ||||| ||| || ||||
Sbjct 1049 CATGAATGATAGCATGGTAGAGCAGTACTTCGAGAGAGTGGAGGAAGAAGAG-GAATGGG 1107
Query 1084 AGGATCTTAAGCTTTCACCAAGGAACAACTTGCATGCTTTAA-GAATTGCAGCAAAGTTG 1142
||||||| |||||| | ||||| |||||||||| ||||||| || | | |||||| ||
Sbjct 1108 AGGATCTAAAGCTTCCGCCAAGAAACAACTTGCCTGCTTTAGCGA-T--C-GCAAAGCTG 1163
Query 1143 TGAAGTAGAAAAATGTGA 1160
||||| || ||| ||||
Sbjct 1164 TGAAGGGGAGAAA-GTGA 1180
> Ahg900847 jgi|Araly1|900847|Al_scaffold_0004_1497
Length=1149
Score = 1351 bits (731), Expect = 0.0
Identities = 1001/1130 (89%), Gaps = 23/1130 (2%)
Strand=Plus/Plus
Query 9 ATGGCATCTCAATCTCAGGTTTTGGTGGAAGAGAAATCAAGTGTTAGAATTTTGACATTA 68
||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||||
Sbjct 1 ATGGCCTCTCACTCTCAGGTTTTAGTGGAAGATAAATCCAGTGTTAGAATCTTGACATTA 60
Query 69 AACCGACCCAAGCAGCTTAATGCTCTGTGCTTCA-ACATGATCTCTCGGTTGCTGCAACT 127
||| |||| || || || |||||||| ||||| | ||||||||||||||||||| |||||
Sbjct 61 AACAGACCGAATCAACTGAATGCTCTATGCTT-AGACATGATCTCTCGGTTGCTACAACT 119
Query 128 ATTCCGTGCATATGAGGAAGACCCTAGTGTTAAACTTGTCATCC-TAAAGGGTCAAGGAA 186
|||| |||||||||||| ||||||||||| ||||||||||||| |||| ||||| ||||
Sbjct 120 GTTCCTTGCATATGAGGAGGACCCTAGTGTGAAACTTGTCATCCTTAAA-GGTCAGGGAA 178
Query 187 GAGCCTTTTGTGCCGGTGGCGACGTTCCACCTGTTGTTCAAAACATGGTACAAGGTAAAT 246
||||||||||||| ||||| |||| || |||| |||||| |||| |||||||| ||||
Sbjct 179 GAGCCTTTTGTGCTGGTGGTGACGCTCTACCTCTTGTTCGTGACATCGTACAAGGCAAAT 238
Query 247 GGAGACTTGGTGCCGATTTCTTCAGAGATCAATACACGCTCAATTATGTTATGGCCACGT 306
||||||| | ||| ||||||| | | ||||||||||||| || |||||| |||||||||
Sbjct 239 GGAGACTCGCCGCCAATTTCTTAACATATCAATACACGCTTAACTATGTTTTGGCCACGT 298
Query 307 ATAGCAAACCTCAGGTTTCAATTTTGAATGGTATTGTCATGGGAGCCGGTGCTGGTGTCT 366
||||||||||||||||||| ||||| ||||||||||||||||||| || |||||| |||
Sbjct 299 ATAGCAAACCTCAGGTTTCGATTTTTAATGGTATTGTCATGGGAGGTGGAGCTGGTCTCT 358
Query 367 CCATCCATGGTCGATTTCGCATTGCAACTGAGAACACGGTTTTTGCCATGCCGGAGACA- 425
| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct 359 CTATCCATGGTCGATTTCGTATTGCAACTGAAAACACGGTTTTTGCAATGCCTGAGACAG 418
Query 426 TCTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTATTTCCTGTCACGGCTCCCTGGATTT 485
| | |||| |||||||||||||||||||||||||| ||| ||||| | ||||||||||||
Sbjct 419 T-TTTGGGACTCTTTCCAGATGTAGGCGCCTCCTACTTCTTGTCAAGACTCCCTGGATTT 477
Query 486 TTTGGAGAGTATGTTGGCCTTACAGGAGCTAGGTTAGATGGCGCTGAATTGCTTGCGTGT 545
|||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||
Sbjct 478 TTTGGAGAGTATGTTGGCCTCACTGGAGCTAGGTTAGATGGGGCTGAAATGCTTGCGTGT 537
Query 546 GGTCTTGCAACTCATTTTGTTCCTTCAACGAGGTTGACAGCTCTAGAA-ACAGATCTTTG 604
|||||||||||||||||||| ||||||| |||||||| || |||||| | |||||||||
Sbjct 538 GGTCTTGCAACTCATTTTGTGCCTTCAATTAGGTTGACTGCACTAGAAGA-AGATCTTTG 596
Query 605 CAAAGTTGGGTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAGCA 664
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CAAAGTTGGTTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAGCA 656
Query 665 TCCGCACCTTAAACAGAAGAGTGCTTACC--A--CA-G-GTTAGATGTTATCGATAGGTG 718
||| ||||||||||||||||||||||||| | || | |||||||||||| ||||||||
Sbjct 657 TCCCCACCTTAAACAGAAGAGTGCTTACCTCAGGCAAGTGTTAGATGTTATTGATAGGTG 716
Query 719 CTTCTCGAAGA-GAACAATGGAAGAAATTATATCTGCACTTGAGAGAGAGACCACTCA-- 775
|||||| |||| ||||| | ||||||||| ||||||||||||||||||||||| ||||
Sbjct 717 CTTCTC-AAGAAGAACAGTCGAAGAAATTCTATCTGCACTTGAGAGAGAGACCGCTCATC 775
Query 776 AG-AACTAGATGATTGGAGCTTAACTA-CGATTCGAGCTTTGAAGAAGTCTTCACCCTCA 833
|| ||| | ||||||||| || ||| | | | | |||| ||||||||| ||||||| |||
Sbjct 776 AGGAACCAAATGATTGGATCTCAACCATC-ACTGGAGCATTGAAGAAGGCTTCACCATCA 834
Query 834 AGCCTTAAAATATCTCTTAGATCGATAAGAGAAGGAAGATTGCAAGGGGTAGGACACTGT 893
||||||||||||||||||||||||||||||||||||||||||||||| || || | |||
Sbjct 835 AGCCTTAAAATATCTCTTAGATCGATAAGAGAAGGAAGATTGCAAGGCGTTGGGGAGTGT 894
Query 894 CTTACCCGCGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGATTTAAGCAAAGACTTG 953
|||| ||| ||||||||||||| |||||||||| | |||||||| |||||||||||||
Sbjct 895 CTTATCCGTGAGTATAGAATGGCGTGTCATGTGTTCAAGGGAGAAATAAGCAAAGACTTT 954
Query 954 GTGGAGGGGTGCAGAGCCATATTGATAGACAAAGATAGGAATCCAAAGTGGGAGCCAAGG 1013
||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 955 GTGGAGGGGTGCAGAGCGATATTGATAGACAAAGATAGGAACCCAAAGTGGAAGCCAAGG 1014
Query 1014 CGATTGGAGGACATGAAGGATAGCATGGTAGATCAGTTCTTTGAGAGAGTGGAAGAAGAG 1073
||| | ||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||
Sbjct 1015 CGACTAGAGGACATGAAGGATAGCATGGTAGATAAGTACTTTGAGAGAGTGGAGGAAGAG 1074
Query 1074 GAGCGATGGGAGGATCTTAA-GCTTTCACCAAGGAACAACTTGCATGCTT 1122
||| ||||||||||| |||| ||||| |||||||||||||| |||||||
Sbjct 1075 GAGGGATGGGAGGAT-TTAAAGCTTTTGCCAAGGAACAACTTTCATGCTT 1123
> Ahg481983 jgi|Araly1|481983|fgenesh2_kg.4__1043__AT2G30650.1
Length=1176
Score = 1075 bits (582), Expect = 0.0
Identities = 657/693 (95%), Gaps = 6/693 (1%)
Strand=Plus/Plus
Query 9 ATGGCATCTCAATCTCAGGTTTTGGTGGAAGAGAAATCAAGTGTTAGAATTTTGACATTA 68
||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 1 ATGGCATCTCAATCTCAGGTTTTGGTGGAGGAGAAATCAAGTGTTGGAATCTTGACATTA 60
Query 69 AACCGACCCAAGCAGCTTAATGCTCTGTGCTTCAACATGATCTCTCGGTTGCTGCAACTA 128
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACAGACCCAAGCAGCTTAATGCTCTGTGCTTCAACATGATCTCTCGGTTGCTGCAACTG 120
Query 129 TTCCGTGCATATGAGGAAGACCCTAG-TGTTAAACTTGTCATCCTAAAGGGTCAAGGAAG 187
|||| ||||||||| || |||||| | ||| |||||||||||||||||||||||||||||
Sbjct 121 TTCCTTGCATATGAAGAGGACCCT-GCTGTGAAACTTGTCATCCTAAAGGGTCAAGGAAG 179
Query 188 AGCCTTTTGTGCCGGTGGCGACGTTCCACCTGTTGTTCAA-AACATGGTACAAGGTAAAT 246
|||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 180 AGCCTTTTGTGCAGGTGGCGACGTTCCACCTGTTGTT-AATAACATGGTACAAGGTAAAT 238
Query 247 GGAGACTTGGTGCCGATTTCTTCAGAGATCAATACACGCTCAATTATGTTATGGCCACGT 306
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 GGAGACTTGGTGCCGATTTCTTCAGAGATCAATACACGCTCAACTATGTTATGGCCACGT 298
Query 307 ATAGCAAACCTCAGGTTTCAATTTTGAATGGTATTGTCATGGGAGCCGGTGCTGGTGTCT 366
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 299 ATAGCAAACCCCAGGTTTCAATTTTGAATGGTATTGTCATGGGAGCCGGAGCTGGTGCCT 358
Query 367 CCATCCATGGTCGATTTCGCATTGCAACTGAGAACACGGTTTTTGCCATGCCGGAGACAT 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCATCCATGGTCGATTTCGCATTGCAACTGAGAACACGGTTTTTGCCATGCCGGAGACAG 418
Query 427 CTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTATTTCCTGTCACGGCTCCCTGGATTTT 486
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 419 CTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTATTTCTTGTCAAGGCTCCCAGGATTTT 478
Query 487 TTGGAGAGTATGTTGGCCTTACAGGAGCTAGGTTAGATGGCGCTGAATTGCTTGCGTGTG 546
||||||||||||| ||||| || |||||||||||||||||||||||| ||||||| ||||
Sbjct 479 TTGGAGAGTATGTCGGCCTCACCGGAGCTAGGTTAGATGGCGCTGAAATGCTTGCATGTG 538
Query 547 GTCTTGCAACTCATTTTGTTCCTTCAACGAGGTTGACAGCTCTAGAAACAGATCTTTGCA 606
||||||||||||||||||| |||||| ||||||||||||| |||||| ||||||||||||
Sbjct 539 GTCTTGCAACTCATTTTGTGCCTTCATCGAGGTTGACAGCACTAGAAGCAGATCTTTGCA 598
Query 607 AAGTTGGGTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAGCATC 666
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGTTGGTTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAGCATC 658
Query 667 CGCACCTTAAACAGAAGAGTGCTT-ACCACAGG 698
| |||||||||||||| ||| ||| ||||||||
Sbjct 659 CCCACCTTAAACAGAACAGT-CTTTACCACAGG 690
Score = 625 bits (338), Expect = 3e-178
Identities = 408/442 (92%), Gaps = 4/442 (1%)
Strand=Plus/Plus
Query 699 TTAGATGTTATCGATAGGTGCTTCTCGAAGAGAACAATGGAAGAAATTATATCTGCACTT 758
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 TTAGATGTTATTGATAGGTGCTTCTCGAAGAGAACAATGGAAGAAATTATATCTGCACTT 789
Query 759 GAGAGAGA-GACCACTCAAGAACTAGATGATTGGAGCTTAACTACGATTCGAGCTTTGAA 817
|||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 790 GAGAGAGATG-CCACTCAAGAACTAGATGATTGGATCTTAACTACCATTCGAGCTTTGAA 848
Query 818 GAAGTCTTCACCCTCAAGCCTTAAAATATCTCTTAGATCGATAAGAGAAGGAAGATTGCA 877
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 849 GAAGTCTTCACCATCAAGCCTTAAAATCTCTCTTAGATCGATAAGAGAAGGAAGATTGCA 908
Query 878 AGGGGTAGGACACTGTCTTACCCGCGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGA 937
|||||| || || ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 909 AGGGGTGGGGCATTGTCTTATCCGTGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGA 968
Query 938 TTTAAGCAAAGACTTGGTGGAGGGGTGCAGAGCCATATTGATAGACAAAGATAGGAATCC 997
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 969 CATAAGCAAAGACTTTGTGCAGGGGTGCAGAGCCATATTGATAGACAAAGATAGGAACCC 1028
Query 998 AAAGTGGGAGCCAAGGCGATTGGAGGACATGAAGGATAGCATGGTAGATCAGTTCTTTGA 1057
||||||||||||||||||| | |||||| |||||||||||||||||||||||| ||||||
Sbjct 1029 AAAGTGGGAGCCAAGGCGACTAGAGGACGTGAAGGATAGCATGGTAGATCAGTACTTTGA 1088
Query 1058 GAGAGTGGAAGAAGAGGAGCGATGGGAGGATCTTAAGCTTTCA-CCAAGGAACAACTTGC 1116
||| ||||| | ||||||| ||||||||||| ||||| |||| ||||||||||||||||
Sbjct 1089 GAGGGTGGAGGGAGAGGAGGGATGGGAGGATATTAAG-TTTCCGCCAAGGAACAACTTGC 1147
Query 1117 ATGCTTTAAGAATTGCAGCAAA 1138
||||| | ||| ||||||||
Sbjct 1148 CTGCTTCATCAATCGCAGCAAA 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5