BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30660.1 Length=1395 Score E Sequences producing significant alignments: (Bits) Value Ahg951654 jgi|Araly1|951654|scaffold_803541.1 1393 0.0 Ahg900847 jgi|Araly1|900847|Al_scaffold_0004_1497 1351 0.0 Ahg481983 jgi|Araly1|481983|fgenesh2_kg.4__1043__AT2G30650.1 1075 0.0 > Ahg951654 jgi|Araly1|951654|scaffold_803541.1 Length=1186 Score = 1393 bits (754), Expect = 0.0 Identities = 1026/1158 (89%), Gaps = 16/1158 (1%) Strand=Plus/Plus Query 9 ATGGCATCTCAATCTCAGGTTTTGGTGGAAGAGAAATCAAGTGTTAGAATTTTGACATTA 68 ||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||| || Sbjct 33 ATGGCCTCTCAGTCTCAGGTTTTGGTGGAAGAGAAATCGAGTGTTAGAATCTTGACACTA 92 Query 69 AACCGACCCAAGCAGCTTAATGCTCTGTGCTT-CAACATGATCTCTCGGTTGCTGCAACT 127 || |||| |||||||| |||||||||| ||| ||| ||||||||||||||| ||||||| Sbjct 93 AATAGACCAAAGCAGCTGAATGCTCTGTCCTTCCAA-ATGATCTCTCGGTTGGTGCAACT 151 Query 128 ATTCCGTGCATATGAGGAAGACCCTAGTGTTAAACTTGTCATCCTAAAGGGTCAA-GGAA 186 |||| ||||| |||||| ||||||||||| |||||||||||||||||||| ||| |||| Sbjct 152 GTTCCTTGCATTTGAGGAGGACCCTAGTGTGAAACTTGTCATCCTAAAGGG-CAATGGAA 210 Query 187 GAGCCTTTTGTGCCGGTGGCGACGTTCCACCTGTTGTTCAAAACATGGTACAAGGTAAAT 246 ||||||||||||| |||||||| ||| || ||||||||| |||| | ||||||||| | Sbjct 211 GAGCCTTTTGTGCTGGTGGCGATGTTGCAGCTGTTGTTCGTGACATCGAACAAGGTAACT 270 Query 247 GGAGACTTGGTGCCGATTTCTTCAGAGATCAATACACGCTCAATTATGTTATGGCCACGT 306 ||||||| |||||| |||||||| ||| |||||| |||||| |||||||||||||| | Sbjct 271 GGAGACTCGGTGCCAATTTCTTCTCCGATGAATACATGCTCAACTATGTTATGGCCACAT 330 Query 307 ATAGCAAACCTCAGGTTTCAATTTTGAATGGTATTGTCATGGGAGCCGGTGCTGGTGTCT 366 |||||||| ||||||||||||||||||||||||| |||||||||| ||| |||||||||| Sbjct 331 ATAGCAAAGCTCAGGTTTCAATTTTGAATGGTATCGTCATGGGAGGCGGAGCTGGTGTCT 390 Query 367 CCATCCATGGTCGATTTCGCATTGCAACTGAGAACACGGTTTTTGCCATGCCGGAGACAT 426 ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 391 CCATCCATGGTCGATTTCGTATTGCAACTGAGAACACGGTTTTTGCCATGCCTGAGACAG 450 Query 427 CTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTATTTCCTGTCACGGCTCCCTGGATTTT 486 |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| Sbjct 451 CTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTACTTCTTGTCAAGGCTCCCTGGATTTT 510 Query 487 TTGGAGAGTATGTTGGCCTTACAGGAGCTAGGTTAGATGGCGCTGAATTGCTTGCGTGTG 546 ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||| Sbjct 511 TTGGAGAGTATGTTGGCCTCACAGGAGCTAGATTAGATGGCGCTGAAATGCTTGCTTGTG 570 Query 547 GTCTTGCAACTCATTTTGTTCCTTCAACGAGGTTGACAGC-TCTAGAAACAGATCTTTGC 605 | ||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||| Sbjct 571 GCCTTGCAACTCATTTTGTGCCTTCAACGAGGTTGACTGCAT-TAGAAACAGATCTTTGC 629 Query 606 AAAGTTGGGTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAGCAT 665 |||||| |||| |||||||| ||||| |||||||||||| |||||||||| |||||| Sbjct 630 CGAGTTGGTTCAAATGATCCAACCTTTGCCTCAACAATTCTCAATGCATACACCCAGCAT 689 Query 666 CCGCACCTTAAACAGAAGAGTGCTTACCACAGGTTAGATGTTATCGATAGGTGCTTCTCG 725 |||| ||| |||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 690 CCGCGCCTGAAACAGCAGAGTGCTTACCACAGGTTAGATGTTATTGATAGGTGCTTCTCA 749 Query 726 AAGAGAACAATGGAAGAAATTATATCTGCACTTGAGAGAGAGACCACTCAAGAA-CTAGA 784 ||||||||| | ||||| |||||||||||||||||||||||| ||||||||||| | ||| Sbjct 750 AAGAGAACAGTTGAAGAGATTATATCTGCACTTGAGAGAGAGGCCACTCAAGAAGC-AGA 808 Query 785 TGATTGGAGCTTAACTACGATTCGAGCTTTGAAGAAGTCTTCACCCTCAAGCCTTAAAAT 844 || ||||| || | |||| |||| ||| ||||||||| ||||||| ||||||||||||| Sbjct 809 TGGTTGGATCTCAGCTACCATTCAAGCATTGAAGAAGGCTTCACCAGCAAGCCTTAAAAT 868 Query 845 ATCTCTTAGATCGATAAGAGAAGGAAGATTGCAAGGGGTAGGACACTGTCTTACCCGCGA 904 ||||||||||||||||| ||||| || |||| ||||| || || ||||||| ||| || Sbjct 869 CTCTCTTAGATCGATAAGGGAAGGGCGACTGCAGGGGGTGGGGCAGTGTCTTATCCGTGA 928 Query 905 GTATAGAATGGTGTGTCATGTGATGAAGGGAGATTTAAGCAAAGACTTGGTGGAGGGGTG 964 ||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||| Sbjct 929 GTATAGAATGGTGTGTCATGTGATGAAGGGAGAAATCAGCAAAGATTTTGTGGAGGGGTG 988 Query 965 CAGAGCCATATTGATAGACAAAGATAGGAATCCAAAGTGGGAGCCAAGGCGATTGGAGGA 1024 ||||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||| Sbjct 989 CAGAGCCATATTGGTAGACAAAGATAAGAACCCAAAGTGGGAGCCAAGGCGACTGGAGGA 1048 Query 1025 CATGAAGGATAGCATGGTAGATCAGTTCTTTGAGAGAGTGGAAGAAGAGGAGCGA-TGGG 1083 |||||| |||||||||||||| |||| ||| ||||||||||| ||||| ||| || |||| Sbjct 1049 CATGAATGATAGCATGGTAGAGCAGTACTTCGAGAGAGTGGAGGAAGAAGAG-GAATGGG 1107 Query 1084 AGGATCTTAAGCTTTCACCAAGGAACAACTTGCATGCTTTAA-GAATTGCAGCAAAGTTG 1142 ||||||| |||||| | ||||| |||||||||| ||||||| || | | |||||| || Sbjct 1108 AGGATCTAAAGCTTCCGCCAAGAAACAACTTGCCTGCTTTAGCGA-T--C-GCAAAGCTG 1163 Query 1143 TGAAGTAGAAAAATGTGA 1160 ||||| || ||| |||| Sbjct 1164 TGAAGGGGAGAAA-GTGA 1180 > Ahg900847 jgi|Araly1|900847|Al_scaffold_0004_1497 Length=1149 Score = 1351 bits (731), Expect = 0.0 Identities = 1001/1130 (89%), Gaps = 23/1130 (2%) Strand=Plus/Plus Query 9 ATGGCATCTCAATCTCAGGTTTTGGTGGAAGAGAAATCAAGTGTTAGAATTTTGACATTA 68 ||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||| Sbjct 1 ATGGCCTCTCACTCTCAGGTTTTAGTGGAAGATAAATCCAGTGTTAGAATCTTGACATTA 60 Query 69 AACCGACCCAAGCAGCTTAATGCTCTGTGCTTCA-ACATGATCTCTCGGTTGCTGCAACT 127 ||| |||| || || || |||||||| ||||| | ||||||||||||||||||| ||||| Sbjct 61 AACAGACCGAATCAACTGAATGCTCTATGCTT-AGACATGATCTCTCGGTTGCTACAACT 119 Query 128 ATTCCGTGCATATGAGGAAGACCCTAGTGTTAAACTTGTCATCC-TAAAGGGTCAAGGAA 186 |||| |||||||||||| ||||||||||| ||||||||||||| |||| ||||| |||| Sbjct 120 GTTCCTTGCATATGAGGAGGACCCTAGTGTGAAACTTGTCATCCTTAAA-GGTCAGGGAA 178 Query 187 GAGCCTTTTGTGCCGGTGGCGACGTTCCACCTGTTGTTCAAAACATGGTACAAGGTAAAT 246 ||||||||||||| ||||| |||| || |||| |||||| |||| |||||||| |||| Sbjct 179 GAGCCTTTTGTGCTGGTGGTGACGCTCTACCTCTTGTTCGTGACATCGTACAAGGCAAAT 238 Query 247 GGAGACTTGGTGCCGATTTCTTCAGAGATCAATACACGCTCAATTATGTTATGGCCACGT 306 ||||||| | ||| ||||||| | | ||||||||||||| || |||||| ||||||||| Sbjct 239 GGAGACTCGCCGCCAATTTCTTAACATATCAATACACGCTTAACTATGTTTTGGCCACGT 298 Query 307 ATAGCAAACCTCAGGTTTCAATTTTGAATGGTATTGTCATGGGAGCCGGTGCTGGTGTCT 366 ||||||||||||||||||| ||||| ||||||||||||||||||| || |||||| ||| Sbjct 299 ATAGCAAACCTCAGGTTTCGATTTTTAATGGTATTGTCATGGGAGGTGGAGCTGGTCTCT 358 Query 367 CCATCCATGGTCGATTTCGCATTGCAACTGAGAACACGGTTTTTGCCATGCCGGAGACA- 425 | ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||| Sbjct 359 CTATCCATGGTCGATTTCGTATTGCAACTGAAAACACGGTTTTTGCAATGCCTGAGACAG 418 Query 426 TCTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTATTTCCTGTCACGGCTCCCTGGATTT 485 | | |||| |||||||||||||||||||||||||| ||| ||||| | |||||||||||| Sbjct 419 T-TTTGGGACTCTTTCCAGATGTAGGCGCCTCCTACTTCTTGTCAAGACTCCCTGGATTT 477 Query 486 TTTGGAGAGTATGTTGGCCTTACAGGAGCTAGGTTAGATGGCGCTGAATTGCTTGCGTGT 545 |||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||||| Sbjct 478 TTTGGAGAGTATGTTGGCCTCACTGGAGCTAGGTTAGATGGGGCTGAAATGCTTGCGTGT 537 Query 546 GGTCTTGCAACTCATTTTGTTCCTTCAACGAGGTTGACAGCTCTAGAA-ACAGATCTTTG 604 |||||||||||||||||||| ||||||| |||||||| || |||||| | ||||||||| Sbjct 538 GGTCTTGCAACTCATTTTGTGCCTTCAATTAGGTTGACTGCACTAGAAGA-AGATCTTTG 596 Query 605 CAAAGTTGGGTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAGCA 664 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 CAAAGTTGGTTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAGCA 656 Query 665 TCCGCACCTTAAACAGAAGAGTGCTTACC--A--CA-G-GTTAGATGTTATCGATAGGTG 718 ||| ||||||||||||||||||||||||| | || | |||||||||||| |||||||| Sbjct 657 TCCCCACCTTAAACAGAAGAGTGCTTACCTCAGGCAAGTGTTAGATGTTATTGATAGGTG 716 Query 719 CTTCTCGAAGA-GAACAATGGAAGAAATTATATCTGCACTTGAGAGAGAGACCACTCA-- 775 |||||| |||| ||||| | ||||||||| ||||||||||||||||||||||| |||| Sbjct 717 CTTCTC-AAGAAGAACAGTCGAAGAAATTCTATCTGCACTTGAGAGAGAGACCGCTCATC 775 Query 776 AG-AACTAGATGATTGGAGCTTAACTA-CGATTCGAGCTTTGAAGAAGTCTTCACCCTCA 833 || ||| | ||||||||| || ||| | | | | |||| ||||||||| ||||||| ||| Sbjct 776 AGGAACCAAATGATTGGATCTCAACCATC-ACTGGAGCATTGAAGAAGGCTTCACCATCA 834 Query 834 AGCCTTAAAATATCTCTTAGATCGATAAGAGAAGGAAGATTGCAAGGGGTAGGACACTGT 893 ||||||||||||||||||||||||||||||||||||||||||||||| || || | ||| Sbjct 835 AGCCTTAAAATATCTCTTAGATCGATAAGAGAAGGAAGATTGCAAGGCGTTGGGGAGTGT 894 Query 894 CTTACCCGCGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGATTTAAGCAAAGACTTG 953 |||| ||| ||||||||||||| |||||||||| | |||||||| ||||||||||||| Sbjct 895 CTTATCCGTGAGTATAGAATGGCGTGTCATGTGTTCAAGGGAGAAATAAGCAAAGACTTT 954 Query 954 GTGGAGGGGTGCAGAGCCATATTGATAGACAAAGATAGGAATCCAAAGTGGGAGCCAAGG 1013 ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| Sbjct 955 GTGGAGGGGTGCAGAGCGATATTGATAGACAAAGATAGGAACCCAAAGTGGAAGCCAAGG 1014 Query 1014 CGATTGGAGGACATGAAGGATAGCATGGTAGATCAGTTCTTTGAGAGAGTGGAAGAAGAG 1073 ||| | ||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| Sbjct 1015 CGACTAGAGGACATGAAGGATAGCATGGTAGATAAGTACTTTGAGAGAGTGGAGGAAGAG 1074 Query 1074 GAGCGATGGGAGGATCTTAA-GCTTTCACCAAGGAACAACTTGCATGCTT 1122 ||| ||||||||||| |||| ||||| |||||||||||||| ||||||| Sbjct 1075 GAGGGATGGGAGGAT-TTAAAGCTTTTGCCAAGGAACAACTTTCATGCTT 1123 > Ahg481983 jgi|Araly1|481983|fgenesh2_kg.4__1043__AT2G30650.1 Length=1176 Score = 1075 bits (582), Expect = 0.0 Identities = 657/693 (95%), Gaps = 6/693 (1%) Strand=Plus/Plus Query 9 ATGGCATCTCAATCTCAGGTTTTGGTGGAAGAGAAATCAAGTGTTAGAATTTTGACATTA 68 ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| Sbjct 1 ATGGCATCTCAATCTCAGGTTTTGGTGGAGGAGAAATCAAGTGTTGGAATCTTGACATTA 60 Query 69 AACCGACCCAAGCAGCTTAATGCTCTGTGCTTCAACATGATCTCTCGGTTGCTGCAACTA 128 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AACAGACCCAAGCAGCTTAATGCTCTGTGCTTCAACATGATCTCTCGGTTGCTGCAACTG 120 Query 129 TTCCGTGCATATGAGGAAGACCCTAG-TGTTAAACTTGTCATCCTAAAGGGTCAAGGAAG 187 |||| ||||||||| || |||||| | ||| ||||||||||||||||||||||||||||| Sbjct 121 TTCCTTGCATATGAAGAGGACCCT-GCTGTGAAACTTGTCATCCTAAAGGGTCAAGGAAG 179 Query 188 AGCCTTTTGTGCCGGTGGCGACGTTCCACCTGTTGTTCAA-AACATGGTACAAGGTAAAT 246 |||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 180 AGCCTTTTGTGCAGGTGGCGACGTTCCACCTGTTGTT-AATAACATGGTACAAGGTAAAT 238 Query 247 GGAGACTTGGTGCCGATTTCTTCAGAGATCAATACACGCTCAATTATGTTATGGCCACGT 306 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 239 GGAGACTTGGTGCCGATTTCTTCAGAGATCAATACACGCTCAACTATGTTATGGCCACGT 298 Query 307 ATAGCAAACCTCAGGTTTCAATTTTGAATGGTATTGTCATGGGAGCCGGTGCTGGTGTCT 366 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 299 ATAGCAAACCCCAGGTTTCAATTTTGAATGGTATTGTCATGGGAGCCGGAGCTGGTGCCT 358 Query 367 CCATCCATGGTCGATTTCGCATTGCAACTGAGAACACGGTTTTTGCCATGCCGGAGACAT 426 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 CCATCCATGGTCGATTTCGCATTGCAACTGAGAACACGGTTTTTGCCATGCCGGAGACAG 418 Query 427 CTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTATTTCCTGTCACGGCTCCCTGGATTTT 486 |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| Sbjct 419 CTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTATTTCTTGTCAAGGCTCCCAGGATTTT 478 Query 487 TTGGAGAGTATGTTGGCCTTACAGGAGCTAGGTTAGATGGCGCTGAATTGCTTGCGTGTG 546 ||||||||||||| ||||| || |||||||||||||||||||||||| ||||||| |||| Sbjct 479 TTGGAGAGTATGTCGGCCTCACCGGAGCTAGGTTAGATGGCGCTGAAATGCTTGCATGTG 538 Query 547 GTCTTGCAACTCATTTTGTTCCTTCAACGAGGTTGACAGCTCTAGAAACAGATCTTTGCA 606 ||||||||||||||||||| |||||| ||||||||||||| |||||| |||||||||||| Sbjct 539 GTCTTGCAACTCATTTTGTGCCTTCATCGAGGTTGACAGCACTAGAAGCAGATCTTTGCA 598 Query 607 AAGTTGGGTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAGCATC 666 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AAGTTGGTTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAGCATC 658 Query 667 CGCACCTTAAACAGAAGAGTGCTT-ACCACAGG 698 | |||||||||||||| ||| ||| |||||||| Sbjct 659 CCCACCTTAAACAGAACAGT-CTTTACCACAGG 690 Score = 625 bits (338), Expect = 3e-178 Identities = 408/442 (92%), Gaps = 4/442 (1%) Strand=Plus/Plus Query 699 TTAGATGTTATCGATAGGTGCTTCTCGAAGAGAACAATGGAAGAAATTATATCTGCACTT 758 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 730 TTAGATGTTATTGATAGGTGCTTCTCGAAGAGAACAATGGAAGAAATTATATCTGCACTT 789 Query 759 GAGAGAGA-GACCACTCAAGAACTAGATGATTGGAGCTTAACTACGATTCGAGCTTTGAA 817 |||||||| | |||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 790 GAGAGAGATG-CCACTCAAGAACTAGATGATTGGATCTTAACTACCATTCGAGCTTTGAA 848 Query 818 GAAGTCTTCACCCTCAAGCCTTAAAATATCTCTTAGATCGATAAGAGAAGGAAGATTGCA 877 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 849 GAAGTCTTCACCATCAAGCCTTAAAATCTCTCTTAGATCGATAAGAGAAGGAAGATTGCA 908 Query 878 AGGGGTAGGACACTGTCTTACCCGCGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGA 937 |||||| || || ||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 909 AGGGGTGGGGCATTGTCTTATCCGTGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGA 968 Query 938 TTTAAGCAAAGACTTGGTGGAGGGGTGCAGAGCCATATTGATAGACAAAGATAGGAATCC 997 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || Sbjct 969 CATAAGCAAAGACTTTGTGCAGGGGTGCAGAGCCATATTGATAGACAAAGATAGGAACCC 1028 Query 998 AAAGTGGGAGCCAAGGCGATTGGAGGACATGAAGGATAGCATGGTAGATCAGTTCTTTGA 1057 ||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||| Sbjct 1029 AAAGTGGGAGCCAAGGCGACTAGAGGACGTGAAGGATAGCATGGTAGATCAGTACTTTGA 1088 Query 1058 GAGAGTGGAAGAAGAGGAGCGATGGGAGGATCTTAAGCTTTCA-CCAAGGAACAACTTGC 1116 ||| ||||| | ||||||| ||||||||||| ||||| |||| |||||||||||||||| Sbjct 1089 GAGGGTGGAGGGAGAGGAGGGATGGGAGGATATTAAG-TTTCCGCCAAGGAACAACTTGC 1147 Query 1117 ATGCTTTAAGAATTGCAGCAAA 1138 ||||| | ||| |||||||| Sbjct 1148 CTGCTTCATCAATCGCAGCAAA 1169 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52145545405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5