BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30670.1
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933572 jgi|Araly1|933572|scaffold_401560.1 1186 0.0
Ahg481846 jgi|Araly1|481846|fgenesh2_kg.4__906__AT2G29310.1 732 0.0
Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2 195 6e-49
Ahg481850 jgi|Araly1|481850|fgenesh2_kg.4__910__AT2G29350.1 156 3e-37
> Ahg933572 jgi|Araly1|933572|scaffold_401560.1
Length=830
Score = 1186 bits (642), Expect = 0.0
Identities = 745/794 (94%), Gaps = 10/794 (1%)
Strand=Plus/Plus
Query 1 ATGGATAAAAGATGGAGTCTTCAGGGTATGACCGCTCTTGTAACTGGTGGAGCCAGCGGA 60
|||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 21 ATGGATCAAAGATGGAGTCTTCAGGGTATGACTGCTCTTGTAACCGGTGGAGCCAGCGGA 80
Query 61 ATCGGGCATGCTATAGTAGAGGAGCTAGCCGGTCTTGGAGCTAGAATCTATGTATGCGAT 120
|||||| |||| ||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 81 ATCGGGTATGCCATAGTAGAGGAGCTAGCTGGTCTTGGAGCTAGAATCCATGTATGCGAT 140
Query 121 ATATCTGAAACACTGCTCAATCAAAGTTTAAGTGAATGGGAAAAGAAAGGGTTTCAAGTA 180
|||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||
Sbjct 141 ATATCTGAAACACTCCTCAACCAAAGTTTAAGCGAATGGGAAAAGAAACGGTTTCAAGTA 200
Query 181 AGTGGTTCAATATGTGATGTATCCTCTCATTCCGAGAGGGAAACACTTATGC-AAACAGT 239
||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 201 AGTGGTTCAATCTGTGATGTAACCTCTCATTCCGAGAGGGAAACACTTATGCAAAAC-GT 259
Query 240 CTCAAAGATGTTCGATGGCAAGCTGAACATTCTTGTGAACAATGTTGGCGTAGTTAATC- 298
||||| |||||| |||||||| |||||||||||||||||||| | ||||||| || |
Sbjct 260 CTCAACGATGTTTGATGGCAAACTGAACATTCTTGTGAACAACGCTGGCGTAATT-CGCA 318
Query 299 CAAAGCCAACAATAGAATATGTGGCAGC-CGATTTCTCGTT-CAGTATTTCAACAAACTT 356
|||||||||||||||||||||||||| | |||||||||||| || |||||||||||||||
Sbjct 319 CAAAGCCAACAATAGAATATGTGGCA-CACGATTTCTCGTTCCA-TATTTCAACAAACTT 376
Query 357 GGAATCTGCTTATCACCTTAGCCAACTTTCACATCCTCTCCTAAAAGCTTCAGAATTTGG 416
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 377 GGAATCTGCTTATCACCTTAGCCAACTTTCTCATCCTCTCCTAAAAGCTTCGGAATTTGG 436
Query 417 AAGCATCATCTTCATTTCTTCTGTTGGAGGGGTTGTGTCAATGGAGTGTGGATCTATCTA 476
||||||| |||| ||||| ||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 437 AAGCATCGTCTTTATTTCCTCTGTTGGAGGAGTTGTATCAATGGAGTGTGGATCTATATA 496
Query 477 TAGTTTAACGAAAGGAGCTTTGAATCAACTAGCAAAAACTTTGGCATGTGAATGGGCAAG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TAGTTTAACGAAAGGAGCTTTGAATCAACTAGCAAAAACTTTGGCATGTGAATGGGCAAG 556
Query 537 AGATGGCATAAGAGCCAACTCTGTTGCTCCTAATTTTATCTACACTGCTATGGCTCAACC 596
||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 557 AGATGGCATAAGAACCAACTCTGTTGCTCCTAATTTTATCCATACTGCTATGGCTCAACT 616
Query 597 TTTTTTCAAAGACGCCGATTACGAGAAGAGTTTGGTTAGTAGAACTCCACTTGGTCGCGC 656
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 617 TTTTTTCAAAGACGCCGATTATGAGAAGAGTTTGGTTAGTAGAACTCCACTTGGTCGCGC 676
Query 657 TGGAGAGCCAA-ATGAGGTTTCATCACTTGTGGCTTTTCTGTGTCTACCTGCAGCTTCAT 715
||||||||||| | |||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct 677 TGGAGAGCCAAGA-GAGGTTGCATCACTTGTGGCTTTTCTATGTCTACCTGCTGCTTCAT 735
Query 716 ATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTCAATGGTTTCTCCTATA 775
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 736 ATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTCAACGGTTTCTCCTATA 795
Query 776 AGCCACAGGCTTGA 789
|||||||||| |||
Sbjct 796 AGCCACAGGCCTGA 809
> Ahg481846 jgi|Araly1|481846|fgenesh2_kg.4__906__AT2G29310.1
Length=809
Score = 732 bits (396), Expect = 0.0
Identities = 665/796 (84%), Gaps = 14/796 (2%)
Strand=Plus/Plus
Query 1 ATGGATAAAAGATGGAGTCTTCAGGGTATGACCGCTCTTGTAACTGGTGGAGCCAGCGGA 60
||||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||
Sbjct 9 ATGGATAAAAGATGGAGTCTTCAATGTATGACTGCTCTTGTGACCGGTGGAGCCAGCGGA 68
Query 61 ATCGGGCATGCTATAGTAGAGGAGCTAGCCGGTCTTGGAGCTAGAATCTATGTATGCGAT 120
|| || |||| |||||||||||| |||| || |||||||||||||| ||||||| ||
Sbjct 69 ATTGGTTATGCCATAGTAGAGGAGTTAGCTAGTTTTGGAGCTAGAATCCATGTATGTGAC 128
Query 121 ATATCTGAAACACTGCTCAATCAAAGTTTAAGTGAATGGGAAAAGAAAGGGTTTCAAGTA 180
|| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 ATCTCTGAAACTCTTCTCAATCAAAGTTTAAGTGAATGGGAAAAGAAAGGGTTTCAAGTG 188
Query 181 AGTGGTTCAATATGTGATGTATCCTCTCATTCCGAGAGGGAAACACTTATGCAAACAGTC 240
||||||||| | ||||||||| | |||| | |||| || |||| ||| |||||||| ||
Sbjct 189 AGTGGTTCAGTCTGTGATGTAACTTCTCGTCCCGATAGAGAAAAACTGATGCAAACCGTT 248
Query 241 TCAAAGATGTTCGATGGCAAGCTGAACATTCTTGTGAACAATGTTGGCGTAGTTAATCCA 300
|| | |||| |||||||| || ||||||||||| ||||||||||| ||| || |
Sbjct 249 TCCTCGCTGTTTGATGGCAAACTCAACATTCTTGTAAACAATGTTGGTGTACTTCG-CGG 307
Query 301 -AAGCCAACAATAGAATATGTGGCAGCCGATTTCTCGTT-CAGTATTTCAACAAACTTGG 358
|||| ||||| ||||||||||||| |||||||| || || || |||||||| ||||
Sbjct 308 GAAGCTAACAACGGAATATGTGGCAGATGATTTCTCTTTTCAC-ATCTCAACAAATTTGG 366
Query 359 AATCTGCTTATC-ACCTTAGCCAACTTTCACATCCTCTCCTAAAAGCTTCAGAATTTGGA 417
|| |||||| || | ||||||| ||||||||||||||| |||| ||||||| |||||||
Sbjct 367 AAGCTGCTT-TCCATTTTAGCCAGCTTTCACATCCTCTCTTAAAGGCTTCAGGATTTGGA 425
Query 418 AGCATCATCTTCATTTCTTCTGTTGGAGGGGTTGTGTCAATGGAGTGTGGATCTATCTAT 477
|||||| |||| || || ||||| |||| |||| ||| | || |||||||| || |||
Sbjct 426 AGCATCGTCTTTATGTCCTCTGTCACAGGGATTGTATCAGTTGAATGTGGATCCATTTAT 485
Query 478 AGTTTAACGAAAGGAGCTTTGAATCAACTAGCAA-AAACTTTGGCATGTGAATGGGCAAG 536
|| |||||||||||||||||||||| || | | ||| ||||||||||||||||||||
Sbjct 486 GGTCTAACGAAAGGAGCTTTGAATCAGTTAACTAGAAA-TTTGGCATGTGAATGGGCAAA 544
Query 537 AGATGGCATAAGAGCCAACT-CTGTTGCTCCTAATTTTATCTACACTGCTATGGCTCAAC 595
|||||||||||||||||| | ||||||| |||||| || || | ||| || || |||||
Sbjct 545 AGATGGCATAAGAGCCAA-TGCTGTTGCACCTAATGTTGTCAAGACTCCTCTGTCTCAAT 603
Query 596 CTTTTTTCAAAGACGCCGATTACGAGAAGAGTTTGGTT-AGTAGAACTCCACTTGGTCGC 654
||| | || | |||| || || | || || | ||| || ||||||||||||||||||||
Sbjct 604 CTTATCTCGAGGACGTCGGTTTCAAGGAGGGATTG-TTGAGTAGAACTCCACTTGGTCGT 662
Query 655 GCTGGAGAGCCAAATGAGGTTTCATCACTTGTGGCTTTTCT-GTGTCTACCTGCAGCTTC 713
| ||||||||||||||| ||| ||||||| |||| | |||| ||||||||||||||||||
Sbjct 663 GTTGGAGAGCCAAATGAAGTTGCATCACTAGTGG-TCTTCTTGTGTCTACCTGCAGCTTC 721
Query 714 ATATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTCAATGGTTTCTCCTA 773
|||||||||||||| ||||||||| ||||||| ||| ||||||| ||||| ||||||||
Sbjct 722 TTATATTACTGGTCAAACCATTTGTATTGATGGTGGTTTCACTGTTAATGGATTCTCCTA 781
Query 774 TAAGCCACAGGCTTGA 789
| ||||||||||||||
Sbjct 782 TCAGCCACAGGCTTGA 797
> Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2
Length=1329
Score = 195 bits (105), Expect = 6e-49
Identities = 127/138 (92%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 652 CGCGCTGGAGAGCCAAATGAGGTTTCATCACTTGTGGCTTTTCTGTGTCTACCTGCAGCT 711
|||| ||||||| ||||||| |||||||| |||||||| ||||| ||||| |||||||||
Sbjct 1152 CGCGTTGGAGAGGCAAATGAAGTTTCATCGCTTGTGGCATTTCTCTGTCTTCCTGCAGCT 1211
Query 712 TCATATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTCAATGGTTTCTCC 771
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1212 TCTTATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTTAATGGCTTCTCC 1271
Query 772 TATAAGCCACAGGCTTGA 789
||| ||||||||||||||
Sbjct 1272 TATCAGCCACAGGCTTGA 1289
> Ahg481850 jgi|Araly1|481850|fgenesh2_kg.4__910__AT2G29350.1
Length=1118
Score = 156 bits (84), Expect = 3e-37
Identities = 244/318 (77%), Gaps = 23/318 (7%)
Strand=Plus/Plus
Query 465 TGGATCTATCTATAGTTTAACGAAAGGAGCTTTGAATCAACTAGC-AAAAACTTTGGCAT 523
|||||| |||||| | ||| |||||||| ||||||| || || | |||| || || |
Sbjct 592 TGGATCCATCTATGGAGCAACCAAAGGAGCCATGAATCAGCTGGCTAGAAAC-TTAGCTT 650
Query 524 GTGAATGGGCAAGAGATGGCATAA-GAGCCAACTCTG-TTGCTCCTAATTTTATCTAC-A 580
| |||||||| || || ||||| || | ||||||| ||| |||| | |||| || |
Sbjct 651 GCGAATGGGCGAGCGACAACATAAGGA-CTAACTCTGTTTG-TCCTTGGTATATC-ACAA 707
Query 581 CTGCTATG-GCTCAAC-CTTTTTTCAAAGACGCCGATTACGAGAAG-AGTTTGGTTAGTA 637
|| || || | | ||| ||||||| | || | | ||| || ||| || ||| |||
Sbjct 708 CTTCTTTGAG-T-AACGATTTTTTCGATGAAG-AGTTTAAGA-AAGAAG--CGGTGCGTA 761
Query 638 GAACTCC-ACTTGGTCGCGCTGGAGAGCCAAATGAGGTTTCATCACTTGTGGCTTTTCTG 696
| || || | | || || | ||||||| ||||||| || ||||| |||||||| |||||
Sbjct 762 GGACACCGA-TGGGACGTGTTGGAGAGGCAAATGAAGTCTCATCGCTTGTGGCATTTCTT 820
Query 697 TGTCTACCTGCAGCTTCATATATTACTGGTCAGACCATTTGTGTTGATGGAGGT-CTCAC 755
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | |||
Sbjct 821 TGTCTTCCTGCAGCTTCTTATATTACTGGTCAGACCATTTGTGTTGACGGAGGTGC-CAC 879
Query 756 TGTCAATGGT-TTCTCCT 772
|||||||||| || ||||
Sbjct 880 TGTCAATGGTCTT-TCCT 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29125908588
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5