BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30690.1
Length=2283
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344831 jgi|Araly1|344831|fgenesh1_pg.C_scaffold_4001173 3544 0.0
> Ahg344831 jgi|Araly1|344831|fgenesh1_pg.C_scaffold_4001173
Length=2286
Score = 3544 bits (1919), Expect = 0.0
Identities = 2167/2288 (95%), Gaps = 11/2288 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCAAATCTTATATTTGATCAAAAGGTCATCAACGGGTTCGCGCCGGTGCTAACT 60
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGATTCAAATGTTATATTTGATCAAAATGTCATCAACGGGTTCGCGCCGGTGCTAACG 60
Query 61 TACGCAGCCTGCGAATGGTTCCTTATATTACTCATGTTCATCGATGCTCTTCTCTCCTAT 120
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 61 TACGCAGCCTGCGAATGGTTCCTCATATTTCTCATGTTCATCGATGCTCTTCTCTCGTAT 120
Query 121 CTTCTCGTCTGGTTTGCGCGTTACTGCAGATTGCAGATGCCATGTTTCCTCTGTTCCAAG 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTCTCGTCTGGTTTGCACGTTACTGCAGATTGCAGATGCCATGTTTCCTCTGTTCCAAG 180
Query 181 CTTCTTCATCCTCTACATTGGAGATTCTTGCTCTGCAGAAACCACAGATCAGAGGTTTCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCTTCATCCTCTACATTGGAGATTCTTGCTCTGCAGAAACCACAGATCAGAGGTTTCA 240
Query 241 TCTTACATGTCATGTCAGAATCACGGCAACAACCTTGCTGATTGTCGAGGCATGTGCGAT 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 TCTTTCATGTCATGTCAGAATCACGGCAACAACCTTGCTGATTGTCGAGGCATGTGTGAT 300
Query 301 GACTGTCTCTTGTCGTTTACCAAAATGACCGGTCCGAATCCAGATATGAACAGATTGCTT 360
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 301 GATTGTCTCTTGTCGTTTACCAAAATGACCGGTCCGAATCCAGACATGAATAGATTGCTT 360
Query 361 CTAGGTAAATTAGGGTATGATCTGCTCTCTAGAAGCCATTTTGCTCACCCTAGGTCTTGT 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CTTGGTAAATTAGGGTATGATCTGCTCTCTAGAAGCCATTTTGCTCACCCTAGATCTTGT 420
Query 421 TCTTGTTGCAATAAACCGTGGAGAACGAGGCACCATACACAGAGACTGATTCGGTTAGGC 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTTGTTGCAATAAACCGTGGAGGACGAGGCACCATACACAGAGACTGATTCGGTTAGGC 480
Query 481 TCTCGAGGG-AGAAACTCCTCAAGTAAACCCAACATTCCTGCTCCACGGCATCTTACCCG 539
||||| ||| ||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 481 TCTCG-GGGAAGAAACTCCGCCGGTAAACCCAACATTCCTGCTCCACGGCATCTTAGCCG 539
Query 540 ACGAGGAAGCGGTGGAAGTTTGAAGAAGATGAGAGATCATATAGCAACAAGTGGTTCTGA 599
||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 540 TCGAGGAAGCGGTGGAAGTTTGAAGACGATGAGAGATCATATGGTAACAAGTGGTTCTGA 599
Query 600 GTATGTTGATGTTGGAAGCCGC---GACGGTATGGCACATGTGGGCTACACAGAGCTGAA 656
||||||||| |||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct 600 GTATGTTGAAGTTGGAAGCCGCAGTGATGGTATGGCTCATGTGGGTTACACAGAGCTGAA 659
Query 657 GATACACTCGGATTCTGAGTCTGAGTTCTTGTTTTCAGATGATGATGCATTCCTCCATAT 716
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 660 GATTCACTCGGATTCTGAGTCTGAGTTCCTGTTTTCAGATGATGATGCATTCCTCCACAT 719
Query 717 AACTGACTTCAATGTTGAGCCATCTGAGAAACGCACGCACAAATCTCGAAGGCGGAAATC 776
|||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 720 AACTGACTTCAATGTTGAGCCAAATGAGAAACGTGCGCACAAGTCTCGAAGGCGGAAATC 779
Query 777 GTTTGACGA-CAAGAAGATGTCGAATCATAAACAGCCTGTCTTGCAAGACAACCAGTATA 835
||||| | |||||||||| |||||||||||| ||||| |||||||||||||||| ||
Sbjct 780 ATTTGA-AATCAAGAAGATGCCGAATCATAAACTGCCTGACTTGCAAGACAACCAGGGTA 838
Query 836 AGAAAATTCATGTAGAAGATAATGAAACTGTCGAATCTTCAATGCTTGGGTATAATCTTG 895
|||| ||||||||||||||||| ||||| |||| ||||||||||| || | |||||||||
Sbjct 839 AGAACATTCATGTAGAAGATAAAGAAACCGTCGCATCTTCAATGCATGAGCATAATCTTG 898
Query 896 AAAACAGGACTCGGCAGAAACAACCTGTTAAGGCAAAGGAGCATGATGATGTACTCTCTG 955
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 899 AAAACAGGACTCGGCAGAAACAACCTGTTAAGGCGAAGGAGCATCATGATGTACTCTCTG 958
Query 956 AGCTTATAACTATGAGTGAAGCTCGTCCGTTTTTACTGGGTTCACCTCGAAAGTATGCTG 1015
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 959 AGCTTATAACTATGAGTGAAGCTCGTCCGTTTTTACTGGGGTCGCCTCGAAAGTATGAAG 1018
Query 1016 CAGGAGTAGTCACACAAAATGAAAATGAAGCTGAGGTAAGTGGCAGCTCATCTCCTTCTG 1075
|| ||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1019 CAAGAGCAGTGGCACAAAATGAAAATGAAGCTGAGGTAAGTGGCAACTCATCTCCTTCTG 1078
Query 1076 GCGGAGAATTTTTGAGCCCTTCTGCAGAAAACGGTGCCTCTAGGGAAATCCGAATTCAAG 1135
|||||||||||||||| ||||||| ||||||||||| |||| |||||||||||| |||||
Sbjct 1079 GCGGAGAATTTTTGAGTCCTTCTGGAGAAAACGGTGTCTCTCGGGAAATCCGAAATCAAG 1138
Query 1136 AGCATGATGATTCCTCAGATTTTTCTCAAAACATCACCAGTTCAGCTATGGAGATAGAAG 1195
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1139 AGCATGATGATTCCTCAGATTTTTCTCAAAACATCCCCAGTTCAGCTATGGAGATGGAAG 1198
Query 1196 AATTTGAGGCAGCTATTGAGCAAAAAGAGTCTGATCACATGGATGTGTCTGGTTCTGTTG 1255
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AATTTGAGCCAGCTATGGAGCAAAAAGAGTCTGATCACATGGATGTGTCTGGTTCTGTTG 1258
Query 1256 CAAATGAACCGTCTAGTGATGAGGAGAATGAAGTTGAAGGAGACTCCAAGCCTTTGATAT 1315
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1259 CAAATGAACCGTCTAGTGATGAAGAGAATGGAGTTGAAGGAGACTCCAAGCCTTTGATAT 1318
Query 1316 CGAATAATATGTCAGATTCTCTGGAACAGGAACAGTCAGGTGAGGAAGAAAGTGAGGTTA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CGAATAATATGTCAGATTCTCTGGAACAGGAACAGTCAGGTGAGGAAGAAAGTGAGGTTA 1378
Query 1376 ATGAAAACAATGTTGCAGAAGAATACTTCAGTAATGAAGAAGAAGATGAGGTCAATGGAC 1435
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1379 ATGAAAACAATGTTGCAGAAGAATACTTCAGTAATGAAGAAGAAGAAGAGGTCAATGGAC 1438
Query 1436 ATACCGAGCCCTTGACATCAAA-AAGTGAGTCTGGTTCATTTGCTGAAGAACAATCTAGT 1494
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||| |||
Sbjct 1439 ATACCGAGCCCTTGACATCAAATAA-TGAGTCTGGTTCATTTGCTGAAGAACGATCCAGT 1497
Query 1495 GAGGACGAAGATGGAAGTAATATTTATTCGGTTGCAAAAGACCATTCCAGTAATGAAGAG 1554
||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||
Sbjct 1498 GAGGAAGAAGATGGAAGTAATATCTATTCGGCTGCAAAAGACCATTCCAGTAACGGAGAG 1557
Query 1555 GATGTGGATAACGAAGAATCTGAGCCAATGACATCAAACAATGTGACTGGTGTTGTCAAA 1614
||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1558 GATGTTGATAATGAAGAATCTGAGTCAATGACATCAAACAATGTGACTGGTGTTGTCACA 1617
Query 1615 GAAGAACACTCAGCTAAAGAAGAGCATGGAGATCATGAAGAGACTGAGCCTTTGACGTCA 1674
||||||||||| | ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1618 GAAGAACACTCGGATAAGGAAGAGCATGGAAATCATGAAGAGACTGAGCCTTTGACGTCA 1677
Query 1675 CTGAACATTTCCAAAGAAGAACCTTCATTAGAACACAGTGATAAAGACTCCTTGAAGATA 1734
|| ||||||||||| |||||| ||| ||||||||||||||||||||| |||| |||| ||
Sbjct 1678 CTAAACATTTCCAATGAAGAATCTTTATTAGAACACAGTGATAAAGATTCCTCGAAGGTA 1737
Query 1735 ACAGAGACTCGTAATACTTCAAATGGATCACCAGAACTAAAGCACTCTGCTTCTGTAGAA 1794
|||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 1738 ACAGAGACTCGTGATACTTCAAATGGGTCACCGGAACTAAAGCACTCAGCTTCTGTAGAA 1797
Query 1795 TCTTTTGTAAGCATTAGCAGTGACATAGAGGGCGAAAGTCTTGTTGAAGTATTGAAGCAA 1854
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1798 TCTTTTGTAAGCATCAGCAGTGACATCGAGGGCGAAAGTCTTGTTGAAGTATTAAAGCAA 1857
Query 1855 CAACTAGAGCATGGCAGGAAATCCCTAAGAGATTTGAATAAAGAATTCGAGGAAGAAAGA 1914
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1858 CAACTAGAGCATGGCAGGAAATCGCTAAGAGATTTGAATAAAGAATTAGAGGAAGAAAGA 1917
Query 1915 AATGCCTCAGCCATTGCTACCAACCAAGCAATGGCGATGATTACGCGGTTGCAGGAGGAG 1974
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1918 AATGCCTCAGCCATTGCTACCAATCAAGCAATGGCGATGATCACGCGGTTGCAGGAGGAG 1977
Query 1975 AAAGCAGCTCTCCATATGGAAGCTTTACAATACCTGAGAATGATGGATGAGCAAGCAGAG 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 AAAGCAGCTCTCCATATGGAAGCTTTACAATACCTGAGAATGATGGATGAGCAAGCAGAG 2037
Query 2035 CACGACATGGATGCACTTGAGAGAGCAAACGATGTCTTGGCTGATAGGGAGAAGGAGATA 2094
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2038 CACGACATGGATGCACTTGAGAGAGCAAACGATGTCTTGGCTGATAGGGAAAAGGAGATA 2097
Query 2095 CAAGATCTTGAGATGGAGTTAGAATATTATAGAGTAAAATATCCAGATGAGCCAAGAGAA 2154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 CAAGATCTTGAGATGGAGTTAGAATATTATAGAGTAAAATATCCAGATGAGCCAAGAGAA 2157
Query 2155 GAAATTCTCGCTAGCATGGG-GATTCTCGGTAATACAGAAGAAACAAATGTCACCTCACC 2213
|||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||
Sbjct 2158 GAAATTCTCGCTAGCATGGGAG-TTCTCGGTAATATAGAAGAAACAAGTGTCACCTCACC 2216
Query 2214 AACTGATGAGACCAGCATTAAGGATTCAACAGACACCAAACTTACCGGTTCTCCATCAGC 2273
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2217 AACTGATGAGACCAGCAATAAGGCTTCAACAGACACCAAACTTACCGGTTCTCCATCAGC 2276
Query 2274 GGAAAATT 2281
||||||||
Sbjct 2277 GGAAAATT 2284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85969682965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5