BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30695.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933576 jgi|Araly1|933576|scaffold_401564.1 935 0.0
> Ahg933576 jgi|Araly1|933576|scaffold_401564.1
Length=641
Score = 935 bits (506), Expect = 0.0
Identities = 598/643 (93%), Gaps = 4/643 (1%)
Strand=Plus/Plus
Query 84 AGAACCAACAGCTATAGATAATGCAGACAATCATCCACAGTCTCTCGTTTTGTAGCTTTA 143
||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1 AGAACCAGCAGCTATCGATAATGCAGACAATCATTCACAATCTCTCGTTTTGTAGCTTTA 60
Query 144 ACTCTACAACAATTAATCCAAAACCCAGATTT-CAATTTTCTTCGTTTT-TAACTCTTCC 201
| |||||| ||| |||| ||||| || ||| ||||||||||| |||| ||||||||||
Sbjct 61 ATTCTACAGTTATTGATCCCAAACCAAG-TTTCCAATTTTCTTC-TTTTGTAACTCTTCC 118
Query 202 TCCAACTTATTCAGTGCAACAGAAACTCTGTACAAGAGCAACGAATAGACAGTTTGTCGC 261
|||||||| |||||||||||||||||||| ||||||||||||||||| | | ||| ||||
Sbjct 119 TCCAACTTTTTCAGTGCAACAGAAACTCTATACAAGAGCAACGAATAAAAAATTTATCGC 178
Query 262 GGTTTGTGCTGCACCATCAGATGTAGAGACTTCTTCCAAGGATGAATCTGTTTTGATTAC 321
|||| ||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 179 CGTTTCTGCAGCACCATCAGATGTAGAGACTTCTTCTAAGGATGAATCTTTTTTGGTTAC 238
Query 322 GAAAGTGGAGACTGAAACCAGCAATGAGGTTAAGGTGCATGTACAAGTGTCAGGAGAGAA 381
|||||| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct 239 GAAAGTAGAGACTGAAAACAGCAATGAAGTTAAGGTGCATGTACAAGTATCAGGAGAGAA 298
Query 382 GACTCAAACTGTATTCAATCATGTTTTTGAGAAAATGGTTGCTGCAGCTCAGCCAATCCC 441
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 299 GACTCAAACAGTATTCAATCATGTATTCGAGAAAATGGTTGCTGCAGCTCAGCCAATTCC 358
Query 442 GGGGTTCCGAAGAGTTAAAGGAGGAAAGACCCCAAATATACCCAAAGATGTTTTGTTAGA 501
||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||
Sbjct 359 AGGGTTCCGAAGAGTTAAAGGAGGGAAGACCCCAAATATACCCAGAGATGTTTTGCTAGA 418
Query 502 GATCCTTGGATATTCTAAAGTCTATAAGCAGGTGATAAAGAAATTAATCAATTCTGCTAT 561
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 419 GATCCTTGGATATTCTAAAGTCTATAGGCAGGTGATAAAGAAATTAATCAATTCTGCTAT 478
Query 562 CGAAGACTATGTTAAACAGGAAGACCTTAAGGTTGGCAAAGAGTTGACTGTTGTGCAAAG 621
||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 479 CGAAGACTATGTTAAACAGGAAGACTTTAAGGTTGGCAAAGAGTTGAGTGTTGAGCAAAG 538
Query 622 CTATGAAGATCTTGAAGAAACATTTGAACCAGGTGAAAGTTTCAGCTTTGATGCTACTAT 681
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 539 CTATGAAGATCTTGAAGAAACATTTGAACCAGGTGAAAGTTTCAGCTTTGATGCTATTAT 598
Query 682 AAAGCTTCAAGAAGCGAGTTGAAGAAAGCGGTGATCCTAAGGT 724
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct 599 AAAGCTTCAAGAAGCGAGTTGAAGAAAGCGTTGATCCTAAGGT 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5