BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30710.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933578 jgi|Araly1|933578|scaffold_401566.1 2255 0.0
> Ahg933578 jgi|Araly1|933578|scaffold_401566.1
Length=1363
Score = 2255 bits (1221), Expect = 0.0
Identities = 1316/1363 (97%), Gaps = 2/1363 (0%)
Strand=Plus/Plus
Query 249 AACTGAAACAGAAACAGAAACCATGGAGAAGAGAGAAGACGAACAACAAAAGCGCGACGA 308
||||||||| ||| | ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 AACTGAAAC--AAATAAAAACCATGGAGAAGAGAGAAGACGAGCAACAAAAGCGCGACGA 58
Query 309 TTCTAGATTCAATCAAACACTCAAGAACGTCCAAGGGTTTCTTAAAGGTAGAAGTATTCC 368
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTCCAGATTCAATCAAACACTCAAGAACGTCCAAGGGTTTCTTAAAGGTAGAAGTATTCC 118
Query 369 TGGTAAGGTATTGTTGACTAGGAGATCAGATCCTCCTCCATACCCAATCTCTCCAACATA 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGGTAAGGTATTGTTGACTAGGAGATCAGATCCTCCTCCATACCCAATCTCTCCAACATA 178
Query 429 TCAACGGAGCTTATCTGAGAATGACGCCGGAAGAAATGAGCTATTCGAAAGTCCTGTTGA 488
||||||||||||||| |||||||||||||| ||||||||| ||| || ||||| |||||
Sbjct 179 TCAACGGAGCTTATCGGAGAATGACGCCGGTCGAAATGAGCCATTTGAGAGTCCCGTTGA 238
Query 489 GGTGGAGGATCACAATTCAAGCAAGAAACATGATAATACATATGCTGGTAAGCTACGATC 548
|||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 239 GGTGGAAGATCACAATTCAAGTAAGAAACATGATAATACGTATGCTGGTAAGCTACGATC 298
Query 549 AAACTCTAGTGCTGAAAGGAGTGTGAAAGAAGTTCAAAACTTGAAGATAGGTGTTCGATC 608
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 299 AAACTCTAGTGCTGAAAGAAGTGTGAAAGAAGTTCAGAACTTGAAGATAGGTGTTAGATC 358
Query 609 AAGTGACTCTGCTAGAGTTATGAAGTTCAACAAAGTGCTTTCAGAAACAACTGTCATATT 668
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 AAGTGATTCTGCTAGAGTTATGAAGTTCAACAAAGTGCTTTCAGAAACAACTGTCATCTT 418
Query 669 AGAGAAACTGCGCGAGCTAGCATGGAATGGTGTACCACACTATATGCGGCCTGATGTCTG 728
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 AGAGAAACTGCGCGAACTAGCATGGAATGGTGTGCCACACTATATGCGGCCTGATGTCTG 478
Query 729 GCGGCTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGCTGTTCTGAGAAG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCGGCTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGCTGTTCTGAGAAG 538
Query 789 AAAACGTCTTGAATATCTGGAATCTGTTGGCCAATTTTATGACCTTCCAGATTCCGAACG 848
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 AAAACGTCTTGAATATCTGGAATCTGTTGGCCAATTTTATGACCTTCCAGATTCAGAACG 598
Query 849 TTCTGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGACTGTCCGAGGACTGTACC 908
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 599 TTCTGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGACTGTCCAAGGACTGTACC 658
Query 909 AGATGTCAGTTTCTTTCAGCAAGAACAGGTGCAGAAATCACTGGAGCGTATTCTTTACAC 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGATGTCAGTTTCTTTCAGCAAGAACAGGTGCAGAAATCACTGGAGCGTATTCTTTACAC 718
Query 969 GTGGGCCATTAGACATCCAGCAAGCGGATATGTTCAGGGAATAAATGACCTGGTCACGCC 1028
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 719 GTGGGCCATTAGGCATCCAGCGAGCGGATACGTTCAGGGAATAAATGACCTGGTCACGCC 778
Query 1029 CTTCCTAGTGATTTTCTTGTCAGAATATCTAGATGGCGGTGTAGACAGTTGGTCAATGGA 1088
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 779 CTTCCTAGTTATTTTCTTGTCAGAATATCTAGATGGCGGTGTTGACAGTTGGTCAATGTC 838
Query 1089 TGATCTATCTGCTGAAAAAGTCTCAGATGTAGAAGCGGATTGCTACTGGTGCTTAACAAA 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGATCTATCTGCTGAAAAAGTCTCAGATGTAGAAGCGGATTGCTACTGGTGCTTAACAAA 898
Query 1149 GCTCCTTGACGGTATGCAAGATCATTACACGTTTGCTCAACCTGGAATCCAGAGACTTGT 1208
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GCTACTTGATGGTATGCAAGATCATTACACGTTTGCTCAACCTGGAATCCAGAGACTTGT 958
Query 1209 GTTTAAGCTGAAGGAACTGGTCAGGCGTATCGATGAACCTGTTTCAAGACACATGGAAGA 1268
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 959 GTTTAAGTTGAAGGAACTGGTCAGGCGTATTGATGAACCTGTTTCAAGACACATGGAAGA 1018
Query 1269 GCATGGGCTAGAGTTTCTTCAATTTGCTTTCCGGTGGTATAATTGTCTTCTGATTCGTGA 1328
||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 1019 GCATGGGCTGGAGTTTCTTCAGTTTGCTTTCCGGTGGTATAACTGTCTTCTCATTCGTGA 1078
Query 1329 GATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTT 1388
|||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1079 GATCCCTTTCAATCTCATCAACCGCCTATGGGACACATATCTTGCTGAAGGAGATGCGTT 1138
Query 1389 GCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGTGGTCTGATGAGCTGAA 1448
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1139 GCCAGACTTCCTAGTGTATATATATGCTAGCTTTCTTTTGACGTGGTCTGATGAGCTGAA 1198
Query 1449 GAAGCTAGATTTTCAAGAAATGGTAATGTTCCTGCAACACCTTCCGACACATAACTGGTC 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GAAGCTAGATTTTCAAGAAATGGTAATGTTCCTGCAACACCTTCCGACACATAACTGGTC 1258
Query 1509 AGACCAAGAGCTCGAAATGGTTTTGTCAAGAGCTTACATGTGGCATAGTATGTTCAATAA 1568
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGACCAAGAGCTCGAAATGGTGTTGTCAAGAGCTTACATGTGGCATAGTATGTTCAATAA 1318
Query 1569 TTCCCCAAACCATTTGGCTAGCTGAAATGACTTTTCCTCCATG 1611
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTCCCCAAACCATTTGGCTAGCTGAAATGACTTTTCCTCCATG 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5