BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30720.1
Length=1752
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481989 jgi|Araly1|481989|fgenesh2_kg.4__1049__AT2G30720.1 2237 0.0
> Ahg481989 jgi|Araly1|481989|fgenesh2_kg.4__1049__AT2G30720.1
Length=1492
Score = 2237 bits (1211), Expect = 0.0
Identities = 1384/1466 (94%), Gaps = 17/1466 (1%)
Strand=Plus/Plus
Query 140 TCGTAGATCCATGAGATCTTCAGCGGGAAAGCTTCTCTCCCATTCTCTACGGAGAAACCG 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 30 TCGTAGATCCATGAGATCTTCAGCGGGAAAGCTTCTCTCCCATTCTCTACGGAGAAACCG 89
Query 200 CGGGAAAC---TT---GG-TG--ATGGATTTTGGATTCCGGCTACGAGGTC-TCA--GAA 247
|||||||| || || | |||||||||||||||||||||| ||||| ||| |||
Sbjct 90 CGGGAAACATGTTGCCGGAGGCCATGGATTTTGGATTCCGGCTACAAGGTCGTCATCGAA 149
Query 248 GATGTGGAATTCGACGGTACCGTCAGATGAAAATCCTGATCAAAATTCGATCGATGCAGG 307
||||| || |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 150 GATGTTGATTTCGACGGTACCGTCAGATGAAAAACCTGATCAAAATTCAATCGATGCAGG 209
Query 308 ATCTTCAATGCGGAAACCAATTAGCTTATGGCCTGGAATGTATCATTCTCCGGTGACTAA 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 ATCTTCAATGCGGAAACCAATTAGCTTATGGCCTGGAATGTATCATTCTCCGGTGACTAA 269
Query 368 TGCGCTTTGGGAAGCTCGTCGTAATATGTTCGAAATTCCTACCGGAGACGACGCTTCTCA 427
|||||||||||||||| | |||||||||||||||| |||||||||||||||| |||||
Sbjct 270 TGCGCTTTGGGAAGCTAGACGTAATATGTTCGAAAGCCCTACCGGAGACGACGATTCTCT 329
Query 428 GTCAAAATTGACGGCTAAATCTCCGTCTCGAAGCCGAACGTCAATTCTCTATAAGTTTTC 487
|||||||||||||||||| |||||||| |||||||| || || |||||||| ||||||||
Sbjct 330 GTCAAAATTGACGGCTAAGTCTCCGTCGCGAAGCCGGACTTCGATTCTCTACAAGTTTTC 389
Query 488 TTCTGATTTTGTTCTTCGAGAACAATATAGGAATCCTTGGAATGAGATTCGTACTGGTAA 547
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 390 TTCTGATTTTGTTCTTAGAGAACAGTATAGGAATCCTTGGAATGAGATTCGTACTGGTAA 449
Query 548 ATTGGTTGAAGATCTTGACGCTCTTGCTGGAACCATCTCCTTCAAGCATTGTGGTGGTGA 607
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 450 ATTGGTTGAAGATCTTGATGCTCTTGCTGGAACCATCTCCTTCAAGCATTGTGGTGGTGA 509
Query 608 CAGCAGTGCGAGATCGATGATTTTGGTGACTGCTTCAGTGGATAGGATTATCATGAAAAG 667
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TAGCAGTGCGAGATCGATGATTTTGGTGACTGCTTCAGTGGATAGGATTATCATGAAAAG 569
Query 668 ACCTATTCGTGTAGATACTGACCTTAGTATAGTTGGTGCTGTTACATGGGTTGGTAGATC 727
||| |||||||| ||| |||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 570 ACCAATTCGTGTTGATGTTGACCTCAGTATAGTTGGCGCTGTTACATGGGTTGGGAGATC 629
Query 728 ATCCATGGAGATGCAATTACAAGTACTCCAAATTCAAGATACCAACAACTCCTCTGAGTC 787
|||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||||
Sbjct 630 ATCCATGGAGATGCAATTACAAGTACTCCAAAGTCAAGATACCATCAATTCCGCTGAGTC 689
Query 788 GGTTGCCCTTGAAGCAAACTTTACATTCGTGGCTCGGGATGCTCAGACAGGCAAGTCAGC 847
||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |
Sbjct 690 GGTTGCCCTTGAAGCAAACTTTACATTTGTGGCTCGAGATGCCCAGACAGGCAAGTCAAC 749
Query 848 TCCAATTAACCAAGTCGTGCCAGAAACTGAGCATGAAAAATTTCTGTGGAAAGAGGCAGA 907
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 750 TCCAATTAACCAAGTCGTGCCTGAAACTGAGCATGAAAAATTTCTGTGGAAAGAGGCAGA 809
Query 908 AGAGAGGAACAAACTACGAAAACAAAAGAGAGCACAGGGTAAAGAAGAGCATGAGAAGTT 967
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 810 AGAGAGGAATAAACTACGAAAACAAAAGAGAGCACAAGGTAAAGAAGAGCATGAGAAGTT 869
Query 968 GAAGGACTTAGAGAGGCTAAATGAGTTATTAGCAGAAGGACGAGTATTCCTGGACATGCC 1027
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 GAAGGACTTAGAGAGGTTAAATGAGTTATTAGCAGAAGGACGAGTATTCCTGGACATGCC 929
Query 1028 AGCTCTTGCAGATCGGAACAGCATCCTAATTAAGGATACTTCCCATGAAAACTCATTGAT 1087
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 930 GGCTCTTGCAGATCGGAACAGCATCCTAATTAAGGATACTTACCATGAAAACTCATTGAT 989
Query 1088 CTGCCAGCCACAGCAACGAAATATTCATGGCAGAATTTTTGGAGGCTTCTTGATGCGCAA 1147
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 990 CTGCCAGCCACAGCAACGGAATATTCATGGCAGAATTTTTGGAGGCTTCTTGATGCGCAA 1049
Query 1148 AGCTTTTGAGTTGGCTTTCTCCAATGCTTACACCTTCGCTGGGGTTTCACCACGTTTTCT 1207
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 AGCTTTTGAGCTGGCCTTCTCCAATGCTTACACCTTCGCTGGGGTTTCACCACGTTTTCT 1109
Query 1208 CGAAGTTGATCGCGTCGATTTTATCAAACCAGTGGATGTTGGAAATTTCCTTCGTTTCAA 1267
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1110 TGAAGTTGATCGCGTCGATTTTATCAAACCAGTAGATGTTGGAAATTTCCTTCGTTTCAA 1169
Query 1268 GTCACGCGTATTGTACACAGAAGC-AACCAGTTCAGCTGAACCGCTGATAAACATCGAGG 1326
||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct 1170 ATCACGAGTATTGTACACAGAAGCTAAC-AGTTCTGCTGAACCGCTGATAAACATCGAGG 1228
Query 1327 TTGTAGCTCATGTTACAAGTCCAGAGCTCAGATCCAGCGAAGTCTCCAACAGGTTTTACT 1386
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 1229 TTGTAGCTCATGTTACAAGTCCAGAGCTCAGGTCCAGCGAAGTCTCTAACAGGTTCTACT 1288
Query 1387 TCACCTTCAGTGTGAGACCTGAGGCCATGAAAGATGGATTGAAAATAAGAAATGTGGTTC 1446
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1289 TCACCTTCAGTGTGAGACCTGAGGCCATGAAAGATGGATTGAAAATAAGGAATGTGGTTC 1348
Query 1447 CAGCAACAGAAGAAGAAGCTAGAA-GAGTGATCGAGCGCATGGACGCAGAGAGACCCATC 1505
|||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 1349 CAGCAACAGAAGAAGAAGCTAGAACG-GTAATCGAGCGCATGGACGCAGAGAGACCCATC 1407
Query 1506 TCATTGCCTTGATTGCCGCATTTGAACAGTTGATTTCGGTAAACAAGAGAAAACATAGTC 1565
|||| ||||||| || |||||||||| |||||| ||||||||||||||||| | ||||
Sbjct 1408 TCATCGCCTTGACCGCGGCATTTGAACTGTTGATATCGGTAAACAAGAGAAACCC-AGTC 1466
Query 1566 TGACTAATATATGAATAAGAAGCCAT 1591
||||||| ||||||||||||||||||
Sbjct 1467 TGACTAAAATATGAATAAGAAGCCAT 1492
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 17 AAAAAATCACTGTAGCGTGATTAGCACTT 45
|||||||||||||||||||||||||||||
Sbjct 1 AAAAAATCACTGTAGCGTGATTAGCACTT 29
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65743762870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5