BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30730.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900854 jgi|Araly1|900854|Al_scaffold_0004_1504 1332 0.0
Ahg933581 jgi|Araly1|933581|scaffold_401569.1 1192 0.0
> Ahg900854 jgi|Araly1|900854|Al_scaffold_0004_1504
Length=1068
Score = 1332 bits (721), Expect = 0.0
Identities = 882/960 (92%), Gaps = 10/960 (1%)
Strand=Plus/Plus
Query 63 TGCAAAGCCTAAGGAGATTCTTCCCATT-ATAGTTCCTTCCTTGTCAGTGGATGAGGTTA 121
|||||||||| |||||| |||||||||| | ||||||| ||||||| || || |||||||
Sbjct 114 TGCAAAGCCTGAGGAGACTCTTCCCATTGA-AGTTCCTCCCTTGTCTGTTGACGAGGTTA 172
Query 122 ATGAACAGACTGACAATTTTGGACCAAATTCTCTGATTGGTGAGGGATCTTATGGAAGGG 181
| ||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 173 AAGAAAAGACTGACAATTTTGGATCAAAGTCTCTGATTGGTGAGGGATCTTATGGAAGGG 232
Query 182 TATACTATGCAACTCTAAATGATGGAAAAGCAGTTGCTTTGAAGAAACTCGATCTTGCAC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 233 TATACTATGCAACTCTAAATGATGGAAAAGCAGTTGCTTTGAAGAAACTCGATGTTGCGC 292
Query 242 CTGAAGATGAAACAAACACCGAGTTTTTAAGCCAGGTTTCCATGGTTTCAAGACTAAAGC 301
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct 293 CTGAAGATGAAACAAACGCCGAGTTCTTAAGCCAGGTTTCCATGGTATCAAGACTAAAGC 352
Query 302 ATGAGAATCTCATTCAACTGGTCGGTTATTGTGTTGATGAAAACCTTCGTGTTCTTGCTT 361
||||||||||||||||||| || |||||||||||||| ||||| || |||||||||||||
Sbjct 353 ATGAGAATCTCATTCAACTAGTTGGTTATTGTGTTGACGAAAAACTACGTGTTCTTGCTT 412
Query 362 ATGAGTTTGCAACAATGGGATCATTGCACGATATTCTGCATGGTAGGAAGGGAGTTCAAG 421
||||||| ||||| ||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 413 ATGAGTTGGCAACGATGGGATCATTGCACGACATTTTACATGGTAGGAAGGGAGTTCAAG 472
Query 422 ATGCACTACCAGGTCCAACACTTGACTGGATAACAAGGGTGAAGATAGCCGTTGAGGCAG 481
|||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 473 GCGCACAACCAGGTCCAACACTTGATTGGATAACGAGGGTGAAGATAGCGGTTGAGGCAG 532
Query 482 CTAGAGGTTTAGAATACCTTCATGAGAAGGTTCAGCCTCAAGTAATACATAGAGACATAA 541
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 533 CTAGGGGTTTAGAATACCTTCATGAGAAGGTTCAACCTCATGTAATACATAGGGACATAA 592
Query 542 GATCTAGCAATATACTTCTTTTTGACGACTATCAAGCAAAAATTGCTGATTTTAATCTTT 601
||||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 593 GATCTAGCAATGTGCTTCTTTTTGAAGACTATAAAGCAAAAATTGCTGATTTTAATCTTT 652
Query 602 CAAATCAATCTCCTGATAATGCTGCTCGT-TTACAATCTACAAGAGTTTTGGGCAGCTTT 660
|||||||| |||||||||||||||||||| || |||||||||||| | ||||| | ||||
Sbjct 653 CAAATCAAGCTCCTGATAATGCTGCTCGTCTT-CAATCTACAAGAATCTTGGGAACCTTT 711
Query 661 GGCTATTACTCTCCAGAATATGCTATGACTGGAGAGTTGACACATAAGAGTGATGTATAT 720
|| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 712 GGTTATCACTCTCCAGAATATGCTATGACTGGAGAGTTGACACATAAGAGTGACGTATAT 771
Query 721 GGTTTTGGGGTTGTACTTCTAGAGCTCTTGACAGGGA-GGAAACCAGTTGA-CCATACAA 778
||||||| || |||||||||||||||||||| |||| ||||||| || || || |||||
Sbjct 772 AGTTTTGGTGTAGTACTTCTAGAGCTCTTGAC-GGGAAGGAAACCTGTGGATCC-TACAA 829
Query 779 TGCCGCGAGGCCAACAAAGTCTTGTAACTTGGGCTACACCGAAACTTAGTGAAGAT-ACA 837
|||| || |||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 830 TGCCACGTGGCCAACAAAGTCTTGTAACTTGGGCTACACCAAAACTTAGTGAAGATGA-A 888
Query 838 GTAGAGGAGTGTGTTGATCCAAAGCTAAAGGGAGAATATTCTCCTAAATCAGTAGCTAAG 897
|||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 889 GTAGAGCAGTGTGTTGATCCAAAGCTAAAAGGAGAATATCCTCCTAAATCAGTAGCTAAG 948
Query 898 CTAGCAGCGGTGGCAGCATTGTGTGTGCAATATGAATCTAATTGTAGACCAAAAATGAGT 957
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 949 CTAGCAGCGGTGGCAGCATTGTGTGTGCAATATGAATCTGAGTGTAGACCAAAAATGAGC 1008
Query 958 ACAGTTGTGAAAGCTTTGCAACAACTTCTTATAGCGACAGGCTCAATACCGCAATTCTAA 1017
||||||||||||||||||||||| |||||| ||||| || | |||||||||||| ||||
Sbjct 1009 ACAGTTGTGAAAGCTTTGCAACAGCTTCTTGTAGCGCCAATCCCAATACCGCAATCCTAA 1068
> Ahg933581 jgi|Araly1|933581|scaffold_401569.1
Length=1136
Score = 1192 bits (645), Expect = 0.0
Identities = 866/971 (89%), Gaps = 21/971 (2%)
Strand=Plus/Plus
Query 31 GCAAATCAAAAGAATCAAAAACCACAAGATCTTGCAAAGCCT-A-----AGGA-G-A-TT 81
||||||||||||||||||||||||| || | ||||||| ||| | || | | | |
Sbjct 114 GCAAATCAAAAGAATCAAAAACCACCAGCTGTTGCAAAACCTGAGGCGCAGAAGGAAGCT 173
Query 82 CTTCCCAT-TATAGTTCCTTCCTTGTCAGTGGATGAGGTTAATGAACAGACTGACAATTT 140
|||||||| | ||||||| ||||||| || || |||||||| ||| |||||||||||||
Sbjct 174 CTTCCCATCGA-AGTTCCTCCCTTGTCTGTTGACGAGGTTAAAGAAAAGACTGACAATTT 232
Query 141 TGGACCAAATTCTCTGATTGGTGAGGGATCTTATGGAAGGGTATACTATGCAACTCTAAA 200
|||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 233 TGGATCAAAGTCTCTGATTGGTGAGGGATCTTATGGAAGGGTATATTATGCAACTCTAAA 292
Query 201 TGATGGAAAAGCAGTTGCTTTGAAGAAACTCGATCTTGCACCTGAAGATGAAACAAACAC 260
|||||| |||||||| |||||||||||||||||| |||| ||||||| ||||||||| |
Sbjct 293 TGATGGGAAAGCAGTGGCTTTGAAGAAACTCGATGTTGCCCCTGAAGCTGAAACAAATTC 352
Query 261 CGAGTTTTTAAGCCAGGTTTCCATGGTTTCAAGACTAAAGCATGAGAATCTCATTCAACT 320
||||| || || ||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 353 TGAGTTCTTGAGTCAGGTTTCCATGGTTTCAAGATTGAAGCATGAGAATCTCATTCAACT 412
Query 321 GGTCGGTTATTGTGTTGATGAAAACCTTCGTGTTCTTGCTTATGAGTTTGCAACAATGGG 380
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GGTTGGTTATTGTGTTGATGAAAACCTTCGTGTTCTTGCTTATGAGTTTGCAACAATGGG 472
Query 381 ATCATTGCACGATATTCTGCATGGTAGGAAGGGAGTTCAAGATGCACTA-CCAGGTCCAA 439
|||| ||||||| ||||| |||||||||||||||||||||| ||||| | || |||||||
Sbjct 473 ATCACTGCACGACATTCTCCATGGTAGGAAGGGAGTTCAAGGTGCAC-AGCCTGGTCCAA 531
Query 440 CACTTGACTGGATAACAAGGGTGAAGATAGCCGTTGAGGCAGCTAGAGGTTTAGAATACC 499
||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 532 CACTTGACTGGTTAACAAGGGTGAAGATAGCAGTTGAGGCAGCTAGGGGTTTAGAATACC 591
Query 500 TTCATGAGAAGGTTCAGCCTCAAGTAATACATAGAGACATAAGATCTAGCAATATACTTC 559
||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||
Sbjct 592 TTCATGAGAAGGTTCAGCCTCCTGTGATACATAGAGACATAAGATCTAGCAATGTGCTTC 651
Query 560 TTTTTGACGACTATCAAGCAAAAATTGCTGATTTTAATCTTTCAAATCAATCTCCTGATA 619
||||||| ||||||||||||||| |||||||||| ||||| ||||||||| |||||||||
Sbjct 652 TTTTTGAAGACTATCAAGCAAAAGTTGCTGATTTCAATCTCTCAAATCAAGCTCCTGATA 711
Query 620 ATGCTGCTCGT-TTACAATCTACAAGAGTTTTGGGCAGCTTTGGCTATTACTCTCCAGAA 678
||||||||||| || || ||||||||||| ||||||| |||||||||| || ||||||||
Sbjct 712 ATGCTGCTCGTCTT-CACTCTACAAGAGTCTTGGGCACCTTTGGCTATCACGCTCCAGAA 770
Query 679 TATGCTATGACTGGAGAGTTGACACATAAGAGTGATGTATATGGTTTTGGGGTTGTACTT 738
||||||||||| ||| ||||||| || |||||||| || ||| | ||||||||||| |||
Sbjct 771 TATGCTATGACCGGACAGTTGACGCAGAAGAGTGACGTGTATAGCTTTGGGGTTGTTCTT 830
Query 739 CTAGAGCTCTTGACAGGGAGGAAACCAGTTGACCATACAATGCCGCGAGGCCAACAAAGT 798
|||||||| ||||||||||||||||| || || || |||||||| || ||||||||||||
Sbjct 831 CTAGAGCTTTTGACAGGGAGGAAACCTGTAGATCACACAATGCCACGTGGCCAACAAAGT 890
Query 799 CTTGTAACTTGGGCTACACCGAA-ACTTAGTGAAGATACAGTAGAGG-AGTGTGTTGATC 856
|||||||| ||||||||||| || ||| |||||||||| ||| || | ||||||||||||
Sbjct 891 CTTGTAACCTGGGCTACACC-AAGACTCAGTGAAGATAAAGT-GAAGCAGTGTGTTGATC 948
Query 857 CAAAGCTAAAGGGAGAATATTCTCCTAAATCAGTAGCTAAGCTAGCAGCGGTGGCAGCAT 916
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 949 CAAAGCTAAAAGGAGAATATCCTCCTAAATCAGTAGCTAAGCTAGCAGCGGTGGCAGCAT 1008
Query 917 TGTGTGTGCAATATGAATCTAA-TTGTAGACCAAAAATGAGTACAGTTGTGAAAGCTTTG 975
||||||| ||||| |||||| | || |||||| || ||||||| |||||| |||||||||
Sbjct 1009 TGTGTGTACAATACGAATCTGAGTT-TAGACCCAACATGAGTATAGTTGTAAAAGCTTTG 1067
Query 976 CAACAACTTCT 986
|| | ||||||
Sbjct 1068 CAGCCACTTCT 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5