BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30740.1
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933581 jgi|Araly1|933581|scaffold_401569.1 1744 0.0
Ahg900854 jgi|Araly1|900854|Al_scaffold_0004_1504 1291 0.0
Ahg913850 jgi|Araly1|913850|Al_scaffold_0001_4104 270 2e-71
> Ahg933581 jgi|Araly1|933581|scaffold_401569.1
Length=1136
Score = 1744 bits (944), Expect = 0.0
Identities = 1079/1144 (94%), Gaps = 9/1144 (1%)
Strand=Plus/Plus
Query 68 ATTTGAAAGAAGAGAACAAGGATGCGTAGGTGGATCTGTTGTGGGGATAAAAAAGGAGAT 127
||||| |||||||||||||||||||| | |||||||||||||||||| |||| |||||||
Sbjct 1 ATTTG-AAGAAGAGAACAAGGATGCGCAAGTGGATCTGTTGTGGGGAGAAAAGAGGAGAT 59
Query 128 TCAGATTTATCAAATGAAGAGGTGCATTTGAAAAGTCCATGGCA-AAATTCTGAGGCAAA 186
||||||||||||||||| ||||||||| |||||||||||||||| || ||||| |||||
Sbjct 60 TCAGATTTATCAAATGAGGAGGTGCATCTGAAAAGTCCATGGCAGCAA-TCTGACGCAAA 118
Query 187 TCAAAAGAATCAAAAACCACAAGCTGTTGTAAAGCCTGAGGCGCAGAAAGAAGCTCTTCC 246
|||||||||||||||||||| |||||||| ||| |||||||||||||| |||||||||||
Sbjct 119 TCAAAAGAATCAAAAACCACCAGCTGTTGCAAAACCTGAGGCGCAGAAGGAAGCTCTTCC 178
Query 247 CATCGAAGTTCCTCCCTTGTCTGTGGATGAGGTTAAAGAAAAGACTGACAATTTTGGATC 306
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 179 CATCGAAGTTCCTCCCTTGTCTGTTGACGAGGTTAAAGAAAAGACTGACAATTTTGGATC 238
Query 307 TAAGTCTCTGATTGGTGAGGGTTCTTATGGAAGGGTATATTATGCAACTCTAAATGATGG 366
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 239 AAAGTCTCTGATTGGTGAGGGATCTTATGGAAGGGTATATTATGCAACTCTAAATGATGG 298
Query 367 GAAAGCAGTTGCTTTGAAGAAACTCGATGTTGCACCTGAAGCTGAAACAAACACCGAGTT 426
||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 299 GAAAGCAGTGGCTTTGAAGAAACTCGATGTTGCCCCTGAAGCTGAAACAAATTCTGAGTT 358
Query 427 CCTGAATCAGGTTTCCATGGTTTCAAGACTAAAACATGAGAATCTCATTCAACTGGTTGG 486
| ||| |||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 359 CTTGAGTCAGGTTTCCATGGTTTCAAGATTGAAGCATGAGAATCTCATTCAACTGGTTGG 418
Query 487 TTATTGTGTTGATGAAAACCTCCGTGTTCTTGCTTATGAGTTTGCAACAATGGGATCACT 546
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTATTGTGTTGATGAAAACCTTCGTGTTCTTGCTTATGAGTTTGCAACAATGGGATCACT 478
Query 547 GCACGACATTCTACATGGTAGGAAGGGAGTTCAAGGAGCACAGCCAGGTCCAACACTTGA 606
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 479 GCACGACATTCTCCATGGTAGGAAGGGAGTTCAAGGTGCACAGCCTGGTCCAACACTTGA 538
Query 607 CTGGTTAACGAGGGTGAAGATAGCTGTTGAGGCAGCTAGGGGTTTAGAATACCTTCATGA 666
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 539 CTGGTTAACAAGGGTGAAGATAGCAGTTGAGGCAGCTAGGGGTTTAGAATACCTTCATGA 598
Query 667 GAAGGTTCAGCCTCCTGTAATACATAGAGACATAAGATCTAGCAATGTTCTCCTTTTTGA 726
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 599 GAAGGTTCAGCCTCCTGTGATACATAGAGACATAAGATCTAGCAATGTGCTTCTTTTTGA 658
Query 727 AGACTATCAAGCAAAAGTTGCAGATTTTAATCTCTCAAATCAAGCTCCTGATAATGCTGC 786
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 659 AGACTATCAAGCAAAAGTTGCTGATTTCAATCTCTCAAATCAAGCTCCTGATAATGCTGC 718
Query 787 TCGTCTTCACTCTACGAGAGTTTTAGGCACCTTTGGCTATCACGCTCCAGAATATGCTAT 846
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 719 TCGTCTTCACTCTACAAGAGTCTTGGGCACCTTTGGCTATCACGCTCCAGAATATGCTAT 778
Query 847 GACAGGACAGTTAACGCAGAAGAGTGACGTGTATAGCTTTGGGGTTGTTCTTCTAGAGCT 906
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GACCGGACAGTTGACGCAGAAGAGTGACGTGTATAGCTTTGGGGTTGTTCTTCTAGAGCT 838
Query 907 TTTGACAGGAAGGAAACCTGTAGATCATACAATGCCACGCGGCCAACAGAGTCTTGTAAC 966
||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 839 TTTGACAGGGAGGAAACCTGTAGATCACACAATGCCACGTGGCCAACAAAGTCTTGTAAC 898
Query 967 TTGGGCTACACCGAGACTCAGTGAAGATAAAGTGAAGCAATGTGTTGATCCAAAGTTAAA 1026
||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 899 CTGGGCTACACCAAGACTCAGTGAAGATAAAGTGAAGCAGTGTGTTGATCCAAAGCTAAA 958
Query 1027 AGGAGAATATCCTCCTAAATCAGTAGCCAAGCTAGCAGCGGTGGCAGCATTATGTGTGCA 1086
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 959 AGGAGAATATCCTCCTAAATCAGTAGCTAAGCTAGCAGCGGTGGCAGCATTGTGTGTACA 1018
Query 1087 ATACGAATCTGAGTTTAGACCAAATATGAGTATAGTTGTAAAAGCTTTGCAGCCACTTCT 1146
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1019 ATACGAATCTGAGTTTAGACCCAACATGAGTATAGTTGTAAAAGCTTTGCAGCCACTTCT 1078
Query 1147 CAAACCACCAGCACCAGCCCCAGCCCCAGTACCGGAATCCTGAGTTTGTGCACCTTTTAA 1206
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1079 CAAACCACCAGCACCAGCCCCAG------TACCGGAATCCTGAGTTTGTGCGCCTTTTAA 1132
Query 1207 ATAC 1210
||||
Sbjct 1133 ATAC 1136
> Ahg900854 jgi|Araly1|900854|Al_scaffold_0004_1504
Length=1068
Score = 1291 bits (699), Expect = 0.0
Identities = 939/1052 (89%), Gaps = 27/1052 (3%)
Strand=Plus/Plus
Query 89 ATGCGTAGGTGGATCTGTTGTG-GGGATAAAAAAGGAGATTCAGATTTATCAAATGAAGA 147
||||| |||||||| ||||||| || ||||||||||| |||||||| |||||||| ||
Sbjct 1 ATGCGCAGGTGGATGTGTTGTGCTGG-TAAAAAAGGAGTTTCAGATTCGTCAAATGAGGA 59
Query 148 GGTGCATTTGAAAAGTCCATGGCAAAATTCTGAGGCAAATCAAAAGAATCAAAAACCACA 207
| | ||| ||||||||||||||||||||||||| |||||||||||||||| | | |
Sbjct 60 GTTACATATGAAAAGTCCATGGCAAAATTCTGACGCAAATCAAAAGAATC----A--A-A 112
Query 208 AGCTGTTGTAAAGCCTGAGGCGCAGAAAGAAGCTCTTCCCATCGAAGTTCCTCCCTTGTC 267
| || ||||||||| | | || | |||||||||| |||||||||||||||||
Sbjct 113 A-----TGCAAAGCCTGA---G--G--AG-A-CTCTTCCCATTGAAGTTCCTCCCTTGTC 158
Query 268 TGTGGATGAGGTTAAAGAAAAGACTGACAATTTTGGATCTAAGTCTCTGATTGGTGAGGG 327
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 159 TGTTGACGAGGTTAAAGAAAAGACTGACAATTTTGGATCAAAGTCTCTGATTGGTGAGGG 218
Query 328 TTCTTATGGAAGGGTATATTATGCAACTCTAAATGATGGGAAAGCAGTTGCTTTGAAGAA 387
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 219 ATCTTATGGAAGGGTATACTATGCAACTCTAAATGATGGAAAAGCAGTTGCTTTGAAGAA 278
Query 388 ACTCGATGTTGCACCTGAAGCTGAAACAAACACCGAGTTCCTGAA-TCAGGTTTCCATGG 446
|||||||||||| ||||||| |||||||||| ||||||| || || |||||||||||||
Sbjct 279 ACTCGATGTTGCGCCTGAAGATGAAACAAACGCCGAGTT-CTTAAGCCAGGTTTCCATGG 337
Query 447 TTTCAAGACTAAAACATGAGAATCTCATTCAACTGGTTGGTTATTGTGTTGATGAAAACC 506
| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 338 TATCAAGACTAAAGCATGAGAATCTCATTCAACTAGTTGGTTATTGTGTTGACGAAAAAC 397
Query 507 TCCGTGTTCTTGCTTATGAGTTTGCAACAATGGGATCACTGCACGACATTCTACATGGTA 566
| |||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||
Sbjct 398 TACGTGTTCTTGCTTATGAGTTGGCAACGATGGGATCATTGCACGACATTTTACATGGTA 457
Query 567 GGAAGGGAGTTCAAGGAGCACAGCCAGGTCCAACACTTGACTGGTTAACGAGGGTGAAGA 626
|||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 458 GGAAGGGAGTTCAAGGCGCACAACCAGGTCCAACACTTGATTGGATAACGAGGGTGAAGA 517
Query 627 TAGCTGTTGAGGCAGCTAGGGGTTTAGAATACCTTCATGAGAAGGTTCAGCCTCCTGTAA 686
|||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 518 TAGCGGTTGAGGCAGCTAGGGGTTTAGAATACCTTCATGAGAAGGTTCAACCTCATGTAA 577
Query 687 TACATAGAGACATAAGATCTAGCAATGTTCTCCTTTTTGAAGACTATCAAGCAAAAGTTG 746
||||||| |||||||||||||||||||| || ||||||||||||||| |||||||| |||
Sbjct 578 TACATAGGGACATAAGATCTAGCAATGTGCTTCTTTTTGAAGACTATAAAGCAAAAATTG 637
Query 747 CAGATTTTAATCTCTCAAATCAAGCTCCTGATAATGCTGCTCGTCTTCACTCTACGAGAG 806
| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 638 CTGATTTTAATCTTTCAAATCAAGCTCCTGATAATGCTGCTCGTCTTCAATCTACAAGAA 697
Query 807 TTTTAGGCACCTTTGGCTATCACGCTCCAGAATATGCTATGACAGGACAGTTAACGCAGA 866
| || || |||||||| |||||| ||||||||||||||||||| ||| |||| || || |
Sbjct 698 TCTTGGGAACCTTTGGTTATCACTCTCCAGAATATGCTATGACTGGAGAGTTGACACATA 757
Query 867 AGAGTGACGTGTATAGCTTTGGGGTTGTTCTTCTAGAGCTTTTGACAGGAAGGAAACCTG 926
|||||||||| ||||| ||||| || || ||||||||||| ||||| |||||||||||||
Sbjct 758 AGAGTGACGTATATAGTTTTGGTGTAGTACTTCTAGAGCTCTTGACGGGAAGGAAACCTG 817
Query 927 TAGATCATACAATGCCACGCGGCCAACAGAGTCTTGTAACTTGGGCTACACCGAGACTCA 986
| |||| |||||||||||| |||||||| ||||||||||||||||||||||| | ||| |
Sbjct 818 TGGATCCTACAATGCCACGTGGCCAACAAAGTCTTGTAACTTGGGCTACACCAAAACTTA 877
Query 987 GTGAAGATAAAGT-GAAGCAATGTGTTGATCCAAAGTTAAAAGGAGAATATCCTCCTAAA 1045
|||||||| |||| || ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 878 GTGAAGATGAAGTAGA-GCAGTGTGTTGATCCAAAGCTAAAAGGAGAATATCCTCCTAAA 936
Query 1046 TCAGTAGCCAAGCTAGCAGCGGTGGCAGCATTATGTGTGCAATACGAATCTGAGTTTAGA 1105
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct 937 TCAGTAGCTAAGCTAGCAGCGGTGGCAGCATTGTGTGTGCAATATGAATCTGAGTGTAGA 996
Query 1106 CCAAATATGAGTATAGTTGTAAAAGCTTTGCA 1137
||||| ||||| | |||||| |||||||||||
Sbjct 997 CCAAAAATGAGCACAGTTGTGAAAGCTTTGCA 1028
> Ahg913850 jgi|Araly1|913850|Al_scaffold_0001_4104
Length=2058
Score = 270 bits (146), Expect = 2e-71
Identities = 489/651 (75%), Gaps = 38/651 (6%)
Strand=Plus/Plus
Query 485 GGTTATTGTGTTGATGAAAAC-CTCCGTGTTCTTGCTTATGAGTTTGCAAC-AATGGGAT 542
|||||||||||||||| | |||||||||||||||||||| ||||| | || ||||
Sbjct 382 GGTTATTGTGTTGATG-GCCCTCTCCGTGTTCTTGCTTATGAATTTGCTCCTAA-AGGAT 439
Query 543 CACTGCACGACATTCTACATGGTAGGAAGGGAGTTC-AAGGAGCACAGCCAGGTCCAACA 601
| || || || | ||| ||||| | || || | | ||||||||| | ||||||
Sbjct 440 CTCTTCATGATACTCTTCATGGCAAAAAAGGTG-CCAAAGGAGCACTGAGAGGTCC--TG 496
Query 602 CT-TGAC-TGGTTAAC-GAGGGTGAAGATAGCTGTTGAG-GCAGCTAG-GGGTTTAGAAT 656
| |||| ||| ||| ||| || || || ||||||| | ||||| || || || || |
Sbjct 497 TTATGACGTGG-CAACAGAGAGTTAAAATCGCTGTTG-GTGCAGCCAGAGGACTT-GAGT 553
Query 657 ACCTT-CATGAGAAGGTTCAG-CCTCCTGTAATACATAGAGACAT-AAGATCTAGCAATG 713
| ||| |||||||||| | || |||| || || || ||||||| || ||| ||||| |
Sbjct 554 A-CTTGCATGAGAAGG-TGAGCCCTCAGGTTATCCACCGAGACATCAA-ATCCAGCAACG 610
Query 714 TTCTCCTT-TTTGAAGACT-ATCAAG-CAAAAGTTGCAGATTTTAATCTCTCAAATCAAG 770
| || || ||||| || | || | ||||| ||| |||||| |||| || ||||||
Sbjct 611 TACT-ATTGTTTGATGA-TGATGTTGCCAAAA-TTGGTGATTTTGATCTGTCTGATCAAG 667
Query 771 CTCCTGATAAT-GCTGCTCGTCTTCACTCTACGAGAGTTTTAGGCACCTTTGGCTATCAC 829
| ||||| || |||||||| |||||||| || | || |||| |||||||||||||||
Sbjct 668 CCCCTGA-CATGGCTGCTCGCCTTCACTCAACTCGTGTGCTAGGAACCTTTGGCTATCAC 726
Query 830 GCTCCAGAATATGCTATGACAGGA-CAGTTAA-CGCAGAAGAGTGACGTGTATAGCTTTG 887
|||||||||||||| ||||||||| | ||| | | || ||||| || || || || ||||
Sbjct 727 GCTCCAGAATATGCAATGACAGGAAC-GTTGAGCTCA-AAGAGCGATGTATACAGTTTTG 784
Query 888 GGGTTGTTCTTCTAGAGCTT-TTGACAGGAAGGAAACCTGTAGATCATACAATGCCACGC 946
| |||||||| || ||||| || || || | ||||| || |||||||| | || ||
Sbjct 785 GTGTTGTTCTGCTGGAGCTCCTT-ACGGGTCGTAAACCAGTGGATCATACCTTACCGCGT 843
Query 947 GGCCAACAGAGTCTTGTAACTTGGGCTACACCGAGACTCAGTGAAGATAAAGTGAAGCAA 1006
|| ||||| ||||| || || ||||| || || | ||| |||||||| |||||||||| |
Sbjct 844 GGACAACAAAGTCTAGTGACATGGGCAACCCCTAAACTAAGTGAAGACAAAGTGAAGCTA 903
Query 1007 TGTGTTGATCCAA-AGTTAAAAGGAGAATATCCTCCTAAATCAGTAGCCAAGCTAGCAGC 1065
|| |||||| ||| | | | ||||| || ||||| ||| | || | ||||||||| ||
Sbjct 904 TGCGTTGATGCAAGACT-ACTCGGAGAGTACCCTCCCAAAGCTGTTGGCAAGCTAGCTGC 962
Query 1066 GGTGGCAGCATTATGTGTGCAATACGAATCTGAGTTTAGACCAAATATGAG 1116
|||||| ||| | ||||||||||| || | | ||||||||||| |||||
Sbjct 963 GGTGGCTGCACTCTGTGTGCAATATGAGGCAAATTTTAGACCAAACATGAG 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56068840640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5