BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30750.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320824 jgi|Araly1|320824|fgenesh1_pm.C_scaffold_4000881 2416 0.0
Ahg481994 jgi|Araly1|481994|fgenesh2_kg.4__1054__AT2G30770.1 2036 0.0
Ahg330954 jgi|Araly1|330954|fgenesh1_pm.C_scaffold_8000297 250 3e-65
> Ahg320824 jgi|Araly1|320824|fgenesh1_pm.C_scaffold_4000881
Length=1512
Score = 2416 bits (1308), Expect = 0.0
Identities = 1447/1515 (96%), Gaps = 6/1515 (0%)
Strand=Plus/Plus
Query 25 ATGAGCAATATTCAAGAAATGGAGATGATATTGATGGTCTCTTTGTGCTTAACGACCCTC 84
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCAATATTCAAGAAATGGAAATGATATTGATGGTCTCTTTGTGCTTAACGACCCTC 60
Query 85 ATT-ACCCTTTTCTTGCTTAAACAATTCCTCAAACGAACCGCCAACAAAGTGAACTTACC 143
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 -TTAACCCTTCTCTTGCTTAAACAATTCCTCAAACGAACCGCCAACAAAGTGAACTTACC 119
Query 144 ACCATCTCCATGGAGGCTTCCGTTGATTGGTAACCTCCACCAGCTTAGCCTCCACCCTCA 203
||||||||||||| | |||||| ||||||| |||||||||||||| ||||||||||||||
Sbjct 120 ACCATCTCCATGGCGACTTCCGGTGATTGGAAACCTCCACCAGCTCAGCCTCCACCCTCA 179
Query 204 CCGTTCCCTCCATTCCCTAAGCCTTCGGTACGGACCACTCATGCTCCTTCATTTTGGCCG 263
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 180 CCGTTCCCTCCATTCCCTCAGCCTCCGGTACGGACCACTCATGCTGCTTCATTTTGGCCG 239
Query 264 TGTCCCCATACTCGTAGTATCCTCCGGGGAAGCAGCTCAAGAGGTATTGAAAACACACGA 323
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 240 TGTCCCCATACTCGTAGTATCCTCCGGCGAAGCAGCTCATGAGGTATTGAAAACACACGA 299
Query 324 TCTTAAGTTTGCCAACCGCCCGAGATCAAAAGCCGTTCATGGGCTTATGAATGGGGGGCG 383
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 300 TCTTAAGTTTGCCAACCGCCCGAGATCAAAAGCCGTTCGTGGGCTTATGAATGGTGGGCG 359
Query 384 TGATGTGGTGTTTGGTCCCTATGGAGAATATTGGAGACAGATGAAGAGTGTATGCATTCT 443
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 TGATGTGGTGTTTGGTCCCTATGGAGATTATTGGAGACAGATGAAGAGTGTATGCATTCT 419
Query 444 CAATCTGCTCACGAACAAAATGGTTGCGTCCTTTGAGAAGATAAGAGAAGAAGAGCTAAA 503
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 420 CAATCTGCTCACCAACAAAATGGTTGCGTCCTTTGAGAAGATAAGAGAAGAAGAGGTAAA 479
Query 504 TGAAATGATCAAGAAGCTGGAGAAAGCAAGTTCTTCTTCTTCGTCAGAAAATCTGAGCGA 563
|| |||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||
Sbjct 480 TGCAATGATTGAGAAGCTGGAGAAAGCAAGTTGTTCTTCTTCATCAGAAAACCTGAGCGA 539
Query 564 ACTCTTTGTTACTCTCCCAAGCGATGTTACGAGTAGAATTGCCTTGGGAAGAAAACATAG 623
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 540 ACTCTTTGTTACTCTACCAAGCGATGTTACGAGTAGAGTTGCCTTGGGAAGAAAACATAG 599
Query 624 TGAGGACGAAACCGCAAGGGATCTCAAGAAGCGAGTGAGGCAGATCATGGAGCTTTTAGG 683
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 CGAGGACGAAACCGCAAGGGATCTTAAGAAGCGAGTGAGGCAGATCATGGAGCTTTTAGG 659
Query 684 CGAGTTCCCAATCGGGGACTATGTCCCGGCTTTGGCATGGATAGACAGGATCAACGGTTT 743
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 660 CGAGTTCCCAATCGGGGACTATGTTCCGGTTTTGGCATGGATAGACAGGATCAACGGTTT 719
Query 744 CAATGCTAGAATAAAGGAAGTAAGTCAAGGGTTTAGCGATCTTATGGACAAAGTGGTGCA 803
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAATGCTAGAATTAAGGAAGTAAGTCAAGGGTTTAGCGATCTTATGGACAAAGTGGTGCA 779
Query 804 AGAACATTTAGAGGCAGGTAATCATAAAGAGGACTTT-GTCGATATACTGTTATCAATCG 862
||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 780 AGAACATCTAGAGGCAGGTAATCATAAAGAGGA-TTTCGTCGATATACTGTTATCAATCG 838
Query 863 AAAGCGAGAAGAGTATTGGATTCCAAGCTCAAAGAGACGACATCAAATTCATGATATTGG 922
||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 839 AAAACGAGAAGAGTATTGGATTCGAAGCTCAAAGAAACGACATCAAATTCATGATATTGG 898
Query 923 ATATGTTTATAGGAGGGACGTCAACAAGTTCAACTCTACTAGAATGGATAATGACGGAGC 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATATGTTTATAGGAGGGACGTCAACAAGTTCAACTCTACTAGAATGGATAATGACGGAGC 958
Query 983 TGATCAGAAATCCAAATGTTATGAAGAAACTCCAAGACGAGATTCGGTCAACCATTAGGC 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGATCAGAAATCCAAATGTTATGAAGAAACTCCAAGACGAGATTCGGTCAACCATTAGGC 1018
Query 1043 CACATGGTTCATACATAAAAGAAAAAGATGTTGAA-AATATGAAATACTTGAAAGCCGTG 1101
|||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 1019 CACATGGTTCATACATAAAAGAAAAAGAAGTT-AATAATATGAAATACTTGAAAGCCGTG 1077
Query 1102 ATTAAAGAGGTGTTTCGGGTGCATCCTCCTCTTCCACTAATACTTCCCAGATTATTAAGT 1161
|||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1078 ATTAAAGAGGTGTTTCGGTTGCATCCTCCTCTTCCACTAATACTTCCTAGACTATTAAGT 1137
Query 1162 GAAGATGTCAAAGTAAAGGGATATAACATAGCCGCAGGAACCGAGGTGATAATCAATGCT 1221
|||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||
Sbjct 1138 GAAGATGTCAAAGTAAAGGGATATAACATAGCGGCAGGGACAGAGGTTATAATCAATGCT 1197
Query 1222 TGGGCCATCCAAAGAGACCCCGCGATATGGGGACCGGATGCAGAAGAATTCAAACCAGAA 1281
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1198 TGGGCAATCCAAAGAGACCCCGCGATATGGGGACCGGATGCCGAAGAATTCAAACCAGAG 1257
Query 1282 AGACATTTAGATTCAACTTTGGATTATCATGGAAAAGATTTAAACTTCATCCCATTCGGA 1341
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1258 AGACACTTAGATTCAACTTTGGATTATCATGGAAAGGATTTGAACTTCATCCCATTCGGA 1317
Query 1342 TCAGGGAGAAGGATTTGTCCAGGGATAAATCTTGCTTTGGGTTTGGTAGAGGTGACAGTG 1401
||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1318 TCAGGTAGAAGGATTTGTCCTGGGATAAATCTGGCTTTGGGTTTGGTAGAGGTTACAGTG 1377
Query 1402 GCCAACCTTGTAGGCCGATTTGACTGGAGGGCCGAGGCTGGACCAAATGGGGATCAACCT 1461
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1378 GCCAACCTTGTAGGCCGATTTGACTGGAGGGTCGAGGCTGGACCAAATGCGGATCAACCT 1437
Query 1462 GATCTAACTGAAGCTTTTGGTCTCGATGTTTGCCGAAAGTTCCCTCTCATTGCATTTCCA 1521
||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1438 GATCTGGCTGAAGCCGCTGGTCTCGATGTTTGCCGCAAGTTCCCTCTCATTGCATTTCCA 1497
Query 1522 TCTTCCGTTATTTAA 1536
||||| ||||| |||
Sbjct 1498 TCTTCAGTTATATAA 1512
> Ahg481994 jgi|Araly1|481994|fgenesh2_kg.4__1054__AT2G30770.1
Length=1545
Score = 2036 bits (1102), Expect = 0.0
Identities = 1397/1539 (91%), Gaps = 21/1539 (1%)
Strand=Plus/Plus
Query 22 TACATGAGCAATATTCAAGAAATGGAGATGATATTGATGGTCTCTTTGTGCTTAACGACC 81
|||||||||||||||||| ||||||| |||||| ||||| ||||||||||||| ||||||
Sbjct 3 TACATGAGCAATATTCAAAAAATGGAAATGATACTGATGATCTCTTTGTGCTTGACGACC 62
Query 82 CTCATT-ACCCTTTTCTTGCTTA-AACAATTCCTCAAACGAACCGCCAAC-AAAGTGAAC 138
||| || |||||| | ||||||| || |||||||||||||||| ||| || |||||||||
Sbjct 63 CTC-TTAACCCTTCTATTGCTTAGAA-AATTCCTCAAACGAACTGCC-ACTAAAGTGAAC 119
Query 139 TTACCACCATCTCCATGGAGGCTTCCGTTGATTGGTAACCTCCACCAGCTTAGCCTCCAC 198
|||||||||||||||| | |||||| ||||||| |||||||||||||| |||||||||
Sbjct 120 CGACCACCATCTCCATGGCGACTTCCGGTGATTGGAAACCTCCACCAGCTCAGCCTCCAC 179
Query 199 CCTCACCGTTCCCTCCATTCCCTAAGCCTTC-GGTACGGACCACTCATGCTCCTTCATTT 257
|||||||||||||||| ||||| |||| || |||||||||| |||||||||||||||||
Sbjct 180 CCTCACCGTTCCCTCCGGTCCCTCAGCC-TCAGGTACGGACCTCTCATGCTCCTTCATTT 238
Query 258 TGGCCGTGTCCCCATACTCGTAGTATCCTCCGGGGAAGCAGCTCAAGAGGTATTGAAAAC 317
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 239 TGGCCGTGTCCCCATACTCGTAGTCTCCTCCGGTGAAGCAGCTCAAGAGGTATTGAAAAC 298
Query 318 ACACGATCTTAAGTTTGCCAACCGCCCGAGATCAAAAGCCGTTCATGGGCTTATGAATGG 377
||| |||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 299 ACATGATCATAAGTTTGCGAACCGCCCGAGATCAAAAGCCGTTCGTGGGCTTATGAATGG 358
Query 378 GGGGCGTGATGTGGTGTTTGGTCCCTATGGAGAATATTGGAGACAGATGAAGAGTGTATG 437
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGGCGTGATGTGGTGTTTGCTCCCTATGGAGAATATTGGAGACAGATGAAGAGTGTATG 418
Query 438 CATTCTCAATCTGCTCACGAACAAAATGGTTGCGTCCTTTGAGAAGATAAGAGAAGAAGA 497
|||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct 419 CATTCTCAATCTGCTCACCAACAAAATGGTTGAATCCTTTGAGAAGGTAAGAGAAGAAGA 478
Query 498 GCTAAATGAAATGATCAAGAAGCTGGAGAAAGCAAGTTCTTCTTCTTCGTCAGAAAATCT 557
| ||| || |||||| ||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 479 GGTAACTGCAATGATGGAGAAGCTGGAGAAAGCAAGTTGTTCTTCTTCATCAGAAAATCT 538
Query 558 GAGCGAACTCTTTGTTACTCTCCCAAGCGATGTTACGAGTAGAATTGCCTTGGGAAGAAA 617
||| ||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 539 GAGTGAAATCTTTATTACTCTACCAAGCGATGTTACGAGTAGGGTTGCCTTGGGAAGAAA 598
Query 618 ACATAGTGAGGACGAAACCGCAAGGGATCTCAAGAAGCGAGTGAGGCAGATCATGGAGCT 677
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 599 ACATAGCGAGGACGAAACCGCAAGGGATCTTAAGAAGCGAGTGAGGCAGATCATGGAGCT 658
Query 678 TTTAGGCGAGTTCCCAATCGGGGACTATGTCCCGGCTTTGGCATGGATAGACAGGATCAA 737
||||||||||||||| |||||||| |||||||| ||||| ||||||||| |||||
Sbjct 659 TTTAGGCGAGTTCCCGATCGGGGAATATGTCCCCATTTTGGGATGGATAGATGGGATCCG 718
Query 738 CGGTTTCAATGCT-AGAATAAAGGAAGTAAGTCAAGGGTTTAGCGATCTTATGGACAAAG 796
||||||||| | || || |||||||| |||| |||||||||||||||||||||||||
Sbjct 719 TGGTTTCAATAATAAG-ATTAAGGAAGTGAGTCGCGGGTTTAGCGATCTTATGGACAAAG 777
Query 797 TGGTGCAAGAACATTTAGAGGCAGG-TAATCATAAAGAGGACTTT-GTCGATATACTGTT 854
|||||||||||||||||||||| || || ||||||| ||| ||| || |||||| ||||
Sbjct 778 TGGTGCAAGAACATTTAGAGGC-GGACAAACATAAAGCGGA-TTTCGTGGATATATTGTT 835
Query 855 ATCAATCGAAAGCGAGAAGAGTATTGGATTCCAAGCTCAAAGAGACGACATCAAATTCAT 914
||||||||||| || |||| || ||||||||||| ||||||||||||||||||||| ||
Sbjct 836 ATCAATCGAAAAAGACAAGAATAATGGATTCCAAGTTCAAAGAGACGACATCAAATTTAT 895
Query 915 GATATTGGATATGTTTATAGGAGGGACGTCAACAAGTTCAACTCTACTAGAATGGATAAT 974
||| |||||||||||||||||||| |||||||||| ||| |||||||||||||||| |||
Sbjct 896 GATCTTGGATATGTTTATAGGAGGAACGTCAACAACTTCGACTCTACTAGAATGGACAAT 955
Query 975 GACGGAGCTGATCAGAAATCCAAATG-TTATGAAGAAACTCCAAGACGAGATTCGGTCAA 1033
|||||| |||||||||| |||||| | ||||||||| ||||||||||||||||||||||
Sbjct 956 GACGGAACTGATCAGAAGTCCAAA-GAGTATGAAGAATCTCCAAGACGAGATTCGGTCAA 1014
Query 1034 CCATTAGGCCACATGGTTCATACATAAAAGAAAAAGATGTTGAAAATATGAAATACTTGA 1093
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1015 CCATTAGGCCACATGGTTCATACATAAAAGAAAAAGAAGTTGAAAATATGAAATACTTGA 1074
Query 1094 AAGCCGTGATTAAAGAGGTGTTTCGGGTGCATCCTCCTCTTCCACTAATACTTCCCAGAT 1153
|||||||||||||||||||| ||||| |||||||| |||||||| | ||||||||||||
Sbjct 1075 AAGCCGTGATTAAAGAGGTGCTTCGGTTGCATCCTTCTCTTCCAATGATACTTCCCAGAC 1134
Query 1154 TATTAAGTGAAGATGTCAAAGTAAAGGGATATAACATAGCCGCAGGAACCGAGGTGATAA 1213
| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1135 TCTTAAGTGAAGATGTCAAAGTAAAGGGATATAACATAGCCGCAGGGACAGAGGTGATCA 1194
Query 1214 TCAATGCTTGGGCCATCCAAAGAGACCCCGCGATATGGGGACCGGATGCAGAAGAATTCA 1273
||||||||||||| |||||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct 1195 TCAATGCTTGGGCGATCCAACGAGACACCGCGATATGGGGACCGGATGCTGAAGAATTCA 1254
Query 1274 AACCAGAAAGACATTTAGATTCAACTTTGGATTATCATGG-AAAAGATTTAAACTTCATC 1332
|||| |||||||| ||||||||| ||||||||||||| || |||| || | |||| |||
Sbjct 1255 AACCGGAAAGACACTTAGATTCAGCTTTGGATTATCACGGGAAAA-ATCTGAACTACATT 1313
Query 1333 CCATTCGGATCAGGGAGAAGGATTTGTCCAGGGATAAATCTTGCTTTGGGTTTGGTAGAG 1392
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1314 CCATTCGGTTCAGGGAGAAGGATTTGTCCCGGGATAAATCTTGCTTTGGGTTTGGCAGAG 1373
Query 1393 GTGACAGTGGCCAACCTTGTAGGCCGATTTGACTGGAGGGCCGAGGCTGGACCAAATGGG 1452
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1374 GTGACAGTGGCCAACCTTGTAGGCCGATTTGACTGGAAGGTAGAGGCTGGACCAAATGGG 1433
Query 1453 GATCAACCTGATCTAACTGAAGCTTTTGGTCTCGATGTTTGCCGAAAGT-TCCCTCTCAT 1511
||||||||||||||| ||||||| ||||| ||||||||||||| |||| ||| ||||||
Sbjct 1434 GATCAACCTGATCTAGCTGAAGCCATTGGTATCGATGTTTGCCGCAAGTCTCC-TCTCAT 1492
Query 1512 TGCATTTCCATCTTCCGTTATTTAAAATGTTT-CTCTTT 1549
||||||||||||||| ||||| ||| |||||| ||||||
Sbjct 1493 TGCATTTCCATCTTCTGTTATGTAACATGTTTTCTCTTT 1531
> Ahg330954 jgi|Araly1|330954|fgenesh1_pm.C_scaffold_8000297
Length=1317
Score = 250 bits (135), Expect = 3e-65
Identities = 347/443 (78%), Gaps = 40/443 (9%)
Strand=Plus/Plus
Query 114 CAAACGAACCGCCAAC-AAAGTGAACTTACCACCATCTCCATGGAGGCTTCC-GTTGATT 171
|||||||||| || || ||| ||||| |||||| ||||||||| ||||||| | ||||
Sbjct 72 CAAACGAACCACC-ACAAAACTGAACCCACCACCGTCTCCATGGCGGCTTCCAG-TGATA 129
Query 172 GGTAACCTCCACCAGCTTAGCCTCCACCCTCACCGTTCCCTCCATTCCCTAAGCCTTCGG 231
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 130 GGAAACCTCCACCAGCTTAGCCTCCACCCTCACCGCTCCCTCCATTCCCTCAGCCTCCGC 189
Query 232 TACGGACCACTCATGCTCCTTCATTTTGGCCGTGTCCCCATACTCGTAGTATCCTCCGGG 291
|| ||||| |||||||||||||| || || |||||||||| |||||||| || ||||
Sbjct 190 TATGGACCGCTCATGCTCCTTCACTTCGGTCGTGTCCCCACCCTCGTAGTCTCATCCGCT 249
Query 292 GAAGCAGCTCAAGAGGT-ATTGAAAACACACGATCTTAAGTTTGCCAACCGCCCGAGATC 350
|| | |||||| || || || ||||||| ||||||||||||| ||| ||||||| | |
Sbjct 250 GACGTAGCTCATGACGTCAT-GAAAACAAACGATCTTAAGTTCGCCGACCGCCCCAAAAG 308
Query 351 AAAAGCCGTT-C-ATGGGCTTATGAATGGGGGGCGTGATGTGGTGTTTGGTCCC-TATGG 407
||||| ||| | ||| || ||||||| ||||| ||||||| ||| |||| | |
Sbjct 309 GAAAGCTGTTTCTATGT--TTCTGAATGGTGGGCGAGATGTGGCATTT--TCCCCT-T-- 361
Query 408 AGAATATTGGAGACAGATGA-AGAGTGTATGCATTCTCAATCTGCTCA-CGAACAAAATG 465
| || ||| | | | |||| | || | | |||||||| | |||||||||
Sbjct 362 ----T-TTCCC--CAGGT-ATAT-GTGT-T--ATGC--A-TCTGCTCAAC-AACAAAATG 405
Query 466 GTTGCG-TCCTTTGAGAA-GATAAGAGAAGAAGAGCTAAATGAAATGATCAAGAAGCTGG 523
||| || ||||||||||| | |||||||||||||| |||| | |||||| ||||| |||
Sbjct 406 GTT-CGGTCCTTTGAGAAAG-TAAGAGAAGAAGAGATAAACGTAATGATGGAGAAGGTGG 463
Query 524 AGAAAGCAAG-TTCTTCTTCTTC 545
|||| || | ||||||||||||
Sbjct 464 AGAAGGCG-GCTTCTTCTTCTTC 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5