BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G30760.1

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg900858 jgi|Araly1|900858|Al_scaffold_0004_1508                    255    9e-68


> Ahg900858 jgi|Araly1|900858|Al_scaffold_0004_1508
Length=207

 Score =  255 bits (138),  Expect = 9e-68
 Identities = 170/185 (92%), Gaps = 4/185 (2%)
 Strand=Plus/Plus

Query  1    ATGCAAATGATCAAGCCGCCGGTGCAACGTCACAGTCATCGTCGTCATCGTCTCCTCCGT  60
            ||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct  1    ATGCACATGATCAAGCCGCCGGAGCAACGTCACAGTCGTCGTCATCATCGTCTCCTCCGT  60

Query  61   TCTCTTGGCCACCAATTTTCTTTTGGtttttttGCCCTTTGTGAAAAGCAAAGAGAATGC  120
            |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||
Sbjct  61   TCTCTTGGCCACCAGTTTTCTTTTGGTTTCTTTGCCCTTTGTGAAAAGCTAAGAGAGTGC  120

Query  121  AAGTGTGACATGG-CAACGGTTATGACCACAAATTTGTACAACGTGGC-ACGTCATAGCC  178
            ||||||||| ||| || ||| ||||||||||||||||||||||||||| | ||||| |||
Sbjct  121  AAGTGTGACCTGGACA-CGGATATGACCACAAATTTGTACAACGTGGCGA-GTCATGGCC  178

Query  179  CGCAC  183
            |||||
Sbjct  179  CGCAC  183



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9729675195


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5