BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30780.1
Length=2181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481995 jgi|Araly1|481995|fgenesh2_kg.4__1055__AT2G30780.1 2813 0.0
> Ahg481995 jgi|Araly1|481995|fgenesh2_kg.4__1055__AT2G30780.1
Length=2091
Score = 2813 bits (1523), Expect = 0.0
Identities = 1927/2116 (91%), Gaps = 52/2116 (2%)
Strand=Plus/Plus
Query 61 AAATTCGTAATTCATGGCATCAAATTTTGTGAAACTCGGCAGTCAATTTATCGGCAAACT 120
||||| |||| |||| |||| |||||| ||||| || |||||||||||||||||||| |
Sbjct 24 AAATTTTTAATCCATGACATCGAATTTTATGAAATTCAGCAGTCAATTTATCGGCAAATT 83
Query 121 CACCCGAGTAACTAGCTTACCAGCTCATCACACTGATTTGGTCCAAAGAGTTTCGATTTT 180
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 84 CACCCGTGTAACTAGCTTACCAGCTCATCACACTGATTTGGTTCAAAGGGTTTCGATTTT 143
Query 181 AAAAGACGAGCTTTTAACGATTGGTAACAGTAAGGAGAAGTTCCAAAATGTTTTGGATCA 240
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 144 AAAAGACGAGCTTTTAACGATTGGTAATAGTAAGGAAAAGTTCCAAAACGTTTTGGATCA 203
Query 241 GAAAGGGCAATGGTTGTTTAGAACTTATCGTGATGGTGCTGGGATCTTAGAGCTTATGGA 300
|||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 204 GAAAGGGCAATGGTTGTTTAAAAGTTATCGTGATGGTGCTGGGATCTTGGAGCTTATGGA 263
Query 301 TCAACTCTTTCCTCGTCATTACTTAGCTCTTCAGGTTTTAGAGTGGAGGAGAGGACAAAA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 264 TCAACTCTTTCCTCGTCATTACTTAGCTCTTCAGGTTTTAGAGTGGAGGAGAGGGCAGAA 323
Query 361 GGATTATTGTATCCCCTTGACATCGGAGGAGTATGCTAAAGGAATCAAAATTGCGGGTAG 420
|||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 324 GGATTACTGTATCCCATTGACATCGGAGGAGTATGCCAAAGGAATCAAAATTGCGGGTCG 383
Query 421 AGCTAGGGATATTAACCTTGCAGTCTATCTTTTCGATGAGGCGGCTAAGAAACGAA-TGC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 384 AGCTAGGGATATTAACCTTGCAGTCTATCTTTTCGATGAGGCGGCTAAGAAACGAAGT-C 442
Query 480 AGACTGCTTCAGTTTATAATTCTTTGATGAGTGTTTACATGTGGAACGGGCTTGCTGAGG 539
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 443 AGACTGCTTCAGTTTACAATGCTTTGATGAGTGTTTACATGTGGAACGGGCTTGCTGATG 502
Query 540 AATGTCAGTCGCTTTTTAAAGATTTCAGGAGGCAAACGCATTGTGCGCCGACCGTTGTGA 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 503 AATGTCAGTCGCTTTTTAAAGATTTCAGGAGGCAAACGCATTGTGCTCCGACCGTTGTGA 562
Query 600 CATATAATATTCTAGTATCTGTTTATGGTCGACTTTTGATGGTAAAGAATATGGAAGCAG 659
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 563 CCTATAATATTCTAGTATCAGTTTATGGTCGACTTTTGATGGTAAAGAATATGGAAGCAG 622
Query 660 CTTTTGAAGAGTTACAAAAAGTGAAGCTTCCTCCTAATTCTGTCACTTACAACTTTCTAA 719
|||| ||||| ||||||||| |||||||| |||| ||||||||||||||||||||||| |
Sbjct 623 CTTTCGAAGAATTACAAAAACTGAAGCTTTCTCCCAATTCTGTCACTTACAACTTTCTGA 682
Query 720 TTGCGGGTTACATGACTGCCTGGAATTGGGATAAAATGGAAGCTACTTTTCAAGAAATGA 779
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TTGCTGGTTACATGACTGCCTGGAATTGGGATAAAATGGAAGCTACTTTTCAAGAAATGA 742
Query 780 AGAGGGGTCCAGTTGAGCCTGACACAGATACTTATCAGCTAATGCTTCGTGGGTATGCAA 839
||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 743 AGAGGGGTCTAGTTGAGCCAGATACAGATACTTATCAGCTAATGCTTCGTGGGTATGCAA 802
Query 840 ATTCTGGGAATTTGAATAGGATGGAAGAAATGTATGAAGTGATTAAAGATCAGGTTGGTG 899
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 803 ATTCTGGGAATTTGAATAAGATGGAAGAAATGTATGAAGTGATTAAAGATCAGGTTGGTG 862
Query 900 TAAACAGTGGTCCTTTGGTCAGAGCTATGATCTGTGCATATTGTAAGAAAGCTGTTGAGG 959
|||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |
Sbjct 863 TAAACAGTAGTCCTTTGGTCAGAGCGATGATCTGTGCATATTCTAAGAAAGCTGTTGATG 922
Query 960 ATAGAGTCCAAAAGATTGAAAATTTATTGAGTCTTCTCTCTGGGGAGGAATATCTTCCTT 1019
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 ATAGAGTCCAAAAGGTTGAAAATTTATTGAGTCTTCTCTCTGGGGAGGAATATCTTCCTT 982
Query 1020 GGTTGAATGTGCTTTTGATTCGACTATATGCTCAAGAAGACTTTGTGGAAGCAATGGAGA 1079
||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 983 GGTTGAACGGGCTTTTGATTCGACTATATGCTCAAGAAGACATTGTGGAAGCAATGGAGG 1042
Query 1080 GTAAAATCAACGAGGCATTTGAGCAGAAGACATGTGTTAATAAGTCAAGTATCATGCGAG 1139
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1043 GTAAAATCAACGAGGCATTTGAGCATAAGACATGTGTTAATAAGTCAAGTATTATGCGGG 1102
Query 1140 CAATCATTGCAGCTTACTTCAGGTGTAATGAAGTTGACAATCTTGCTAATTTCGTCAAGC 1199
|||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1103 CAATAATTGCAGCCTACTTCAGGTGTAATGAAGTTGACAATCTTGCTTATTTCGTCAAGC 1162
Query 1200 GTGCTGAGTCTGCTGGGTGGAAACTATGCAGATCTCTCTACCACTGTAAGATCATGATGT 1259
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 GTGCTGAGTCTGCTGGCTGGAAACTATGCAGATCTCTCTACCACTGTAAGATCATGATGT 1222
Query 1260 ATGGATCCCAAAAACGCTTTGAAGAAATGGAAGGTGTTGTAAATGAGATGGCAGAGACCA 1319
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1223 ATGGATCCCAAAAACGTTTTGAAGAAATGGAAGGTGTTTTAAATGAGATGGCAGAGACTA 1282
Query 1320 ATTATGGGCTTGTAACTAAAACGTTCGCCATTATG-ATTAAAGCTTATAAAAACCATGGA 1378
| ||||||||||| ||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct 1283 ACTATGGGCTTGTGACTAAAACGTTCGCCATTATGTAT-AAGGCTTATAAAAATCATGGA 1341
Query 1379 ATGGAGTCAGATGCTGAGAAAGTGAAGGGAAAGATGCTGAAACGTGGGCTTTAGATGCAC 1438
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1342 ATGGAGTCAGATGCTGAGAAAGTGAAGGGAATGATGCTGAAACGTGGGCTTTAGATGAAC 1401
Query 1439 TTCAGTTTGCACAAAGAATTCTGTTGTTTCGATTTGTTCAGTGTCTTTATCAAGTGTGAA 1498
|||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1402 TTCAATTTGCGCAAAGAATTCTGTTGTTTTGATTTGTTCAGTGTCTTTATCAGGTGTGCG 1461
Query 1499 CTCTGGCCAAACTGAGTATCAAATGGTTAGTGCTGTTTCTGCGTTTTCACAAGTCTCCTG 1558
|| | |||||| |||||||| |||||||||||||||||||| ||| || ||||||||||
Sbjct 1462 CTGTA-CCAAACAGAGTATCATATGGTTAGTGCTGTTTCTGCCTTTGCATAAGTCTCCTG 1520
Query 1559 TTTATAGTGACTTACCAGGGAGTTGTGCTTAGC-TTTGGTCTCCCTTTTTAGCAATCAGG 1617
|||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||
Sbjct 1521 TTTATAGTGACTTACCAGGGGGTTGTGCTTAGCATTTGGTCTCTTTTTTTATCAATCAGG 1580
Query 1618 TTGTAGAACTGTCCCCCATGAGGCTGAATAAAAGATGCTGGATATGCTTCCATAATCCGT 1677
|||||||||||| | |||| |||||||||||||||||||||||| |||||||| ||| ||
Sbjct 1581 TTGTAGAACTGTGCTCCATCAGGCTGAATAAAAGATGCTGGATAGGCTTCCATGATCTGT 1640
Query 1678 CATTAGGGGTTTTGGGATAAGACTAGTCCACAGTTCTTTTC-CGTCATGAGTGACTCAAC 1736
|||||||||||||||||| ||||||| ||||| || ||||| ||||||||||||||||||
Sbjct 1641 CATTAGGGGTTTTGGGATGAGACTAGCCCACATTTATTTTCTCGTCATGAGTGACTCAAC 1700
Query 1737 CATCACTAGTCTGCCATAGTTGTACATGTTACAGGCAGGGTTTGAAATTTCCATGGCAGA 1796
| |||||| ||||||||||||||||||||||| ||||| |||| |||| |||||||||||
Sbjct 1701 CGTCACTATTCTGCCATAGTTGTACATGTTACGGGCAGAGTTTAAAATGTCCATGGCAGA 1760
Query 1797 TTTTGATCCTGTTGGCAGATGAGAAACCTCGGTAAAACAAATTCTCTGTGATCCATGAAG 1856
||||| |||||||| |||||||||||| | || | | | | |||
Sbjct 1761 TTTTGGTCCTGTTGATAGATGAGAAACC-C-------CA--T-----G--A---A-GAA- 1798
Query 1857 AACAGTGCCTGCTCTATCTGGACGTCTTACCTGTGTTTGCCGATACGATTAGAAGAGCTA 1916
|||||||| | ||||||||| | || | | || | | ||| ||||||||||||||
Sbjct 1799 --CAGTGCCTCCGCTATCTGGA--TATT-C-T-TGCT-G---ATAGGATTAGAAGAGCTA 1847
Query 1917 TGATTTTCTTCCTATTTGATGGCTCTGCCAAGTGAAGTTATTTCCTTGAAGAGAAACCTG 1976
|||||| |||| || | || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1848 TGATTTCCTTCTTACT-GAAGGCTCTGCCAAGTGAAGTTATTTCCTTAAAGAGAAACCTG 1906
Query 1977 ACCGATGTTGCAGCGGGTTTCTCTTTCTGCCACCCCTGGGTTAAATTTCCAGATTGTCGT 2036
| |||||||||| || ||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 1907 GCTGATGTTGCAGTGGCTTTCTCTTTCTGCCACCCCTGGGTTCAGTTTCCAGATTGTTGT 1966
Query 2037 AACTTAATTTTTGTTGTTGTTAGGCTATCACAGTCTTACATCCACATACTGCTCTGTTGT 2096
||| | | | || || | |||||| || ||||||||||||| ||||
Sbjct 1967 TG-TTAG-----GCTATCAACAGTCT-T----GTCTTAGATTCACATACTGCTCTATTGT 2015
Query 2097 TTAGGCTTGAGCCCTGTTTGTAAATTTGAGGAAAACAGATAGCTCAGCTACACATGATGT 2156
||||||||||||||||||||||| ||| |||||| | |||||||||||||||||||||||
Sbjct 2016 TTAGGCTTGAGCCCTGTTTGTAATTTTAAGGAAACCTGATAGCTCAGCTACACATGATGT 2075
Query 2157 TTCAGTATAGTGAGAC 2172
|||||||||||| |||
Sbjct 2076 TTCAGTATAGTGGGAC 2091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82084477975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5