BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30780.1 Length=2181 Score E Sequences producing significant alignments: (Bits) Value Ahg481995 jgi|Araly1|481995|fgenesh2_kg.4__1055__AT2G30780.1 2813 0.0 > Ahg481995 jgi|Araly1|481995|fgenesh2_kg.4__1055__AT2G30780.1 Length=2091 Score = 2813 bits (1523), Expect = 0.0 Identities = 1927/2116 (91%), Gaps = 52/2116 (2%) Strand=Plus/Plus Query 61 AAATTCGTAATTCATGGCATCAAATTTTGTGAAACTCGGCAGTCAATTTATCGGCAAACT 120 ||||| |||| |||| |||| |||||| ||||| || |||||||||||||||||||| | Sbjct 24 AAATTTTTAATCCATGACATCGAATTTTATGAAATTCAGCAGTCAATTTATCGGCAAATT 83 Query 121 CACCCGAGTAACTAGCTTACCAGCTCATCACACTGATTTGGTCCAAAGAGTTTCGATTTT 180 |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 84 CACCCGTGTAACTAGCTTACCAGCTCATCACACTGATTTGGTTCAAAGGGTTTCGATTTT 143 Query 181 AAAAGACGAGCTTTTAACGATTGGTAACAGTAAGGAGAAGTTCCAAAATGTTTTGGATCA 240 ||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| Sbjct 144 AAAAGACGAGCTTTTAACGATTGGTAATAGTAAGGAAAAGTTCCAAAACGTTTTGGATCA 203 Query 241 GAAAGGGCAATGGTTGTTTAGAACTTATCGTGATGGTGCTGGGATCTTAGAGCTTATGGA 300 |||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||| Sbjct 204 GAAAGGGCAATGGTTGTTTAAAAGTTATCGTGATGGTGCTGGGATCTTGGAGCTTATGGA 263 Query 301 TCAACTCTTTCCTCGTCATTACTTAGCTCTTCAGGTTTTAGAGTGGAGGAGAGGACAAAA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 264 TCAACTCTTTCCTCGTCATTACTTAGCTCTTCAGGTTTTAGAGTGGAGGAGAGGGCAGAA 323 Query 361 GGATTATTGTATCCCCTTGACATCGGAGGAGTATGCTAAAGGAATCAAAATTGCGGGTAG 420 |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| | Sbjct 324 GGATTACTGTATCCCATTGACATCGGAGGAGTATGCCAAAGGAATCAAAATTGCGGGTCG 383 Query 421 AGCTAGGGATATTAACCTTGCAGTCTATCTTTTCGATGAGGCGGCTAAGAAACGAA-TGC 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 384 AGCTAGGGATATTAACCTTGCAGTCTATCTTTTCGATGAGGCGGCTAAGAAACGAAGT-C 442 Query 480 AGACTGCTTCAGTTTATAATTCTTTGATGAGTGTTTACATGTGGAACGGGCTTGCTGAGG 539 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | Sbjct 443 AGACTGCTTCAGTTTACAATGCTTTGATGAGTGTTTACATGTGGAACGGGCTTGCTGATG 502 Query 540 AATGTCAGTCGCTTTTTAAAGATTTCAGGAGGCAAACGCATTGTGCGCCGACCGTTGTGA 599 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 503 AATGTCAGTCGCTTTTTAAAGATTTCAGGAGGCAAACGCATTGTGCTCCGACCGTTGTGA 562 Query 600 CATATAATATTCTAGTATCTGTTTATGGTCGACTTTTGATGGTAAAGAATATGGAAGCAG 659 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 563 CCTATAATATTCTAGTATCAGTTTATGGTCGACTTTTGATGGTAAAGAATATGGAAGCAG 622 Query 660 CTTTTGAAGAGTTACAAAAAGTGAAGCTTCCTCCTAATTCTGTCACTTACAACTTTCTAA 719 |||| ||||| ||||||||| |||||||| |||| ||||||||||||||||||||||| | Sbjct 623 CTTTCGAAGAATTACAAAAACTGAAGCTTTCTCCCAATTCTGTCACTTACAACTTTCTGA 682 Query 720 TTGCGGGTTACATGACTGCCTGGAATTGGGATAAAATGGAAGCTACTTTTCAAGAAATGA 779 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 683 TTGCTGGTTACATGACTGCCTGGAATTGGGATAAAATGGAAGCTACTTTTCAAGAAATGA 742 Query 780 AGAGGGGTCCAGTTGAGCCTGACACAGATACTTATCAGCTAATGCTTCGTGGGTATGCAA 839 ||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 743 AGAGGGGTCTAGTTGAGCCAGATACAGATACTTATCAGCTAATGCTTCGTGGGTATGCAA 802 Query 840 ATTCTGGGAATTTGAATAGGATGGAAGAAATGTATGAAGTGATTAAAGATCAGGTTGGTG 899 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 803 ATTCTGGGAATTTGAATAAGATGGAAGAAATGTATGAAGTGATTAAAGATCAGGTTGGTG 862 Query 900 TAAACAGTGGTCCTTTGGTCAGAGCTATGATCTGTGCATATTGTAAGAAAGCTGTTGAGG 959 |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| | Sbjct 863 TAAACAGTAGTCCTTTGGTCAGAGCGATGATCTGTGCATATTCTAAGAAAGCTGTTGATG 922 Query 960 ATAGAGTCCAAAAGATTGAAAATTTATTGAGTCTTCTCTCTGGGGAGGAATATCTTCCTT 1019 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 923 ATAGAGTCCAAAAGGTTGAAAATTTATTGAGTCTTCTCTCTGGGGAGGAATATCTTCCTT 982 Query 1020 GGTTGAATGTGCTTTTGATTCGACTATATGCTCAAGAAGACTTTGTGGAAGCAATGGAGA 1079 ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 983 GGTTGAACGGGCTTTTGATTCGACTATATGCTCAAGAAGACATTGTGGAAGCAATGGAGG 1042 Query 1080 GTAAAATCAACGAGGCATTTGAGCAGAAGACATGTGTTAATAAGTCAAGTATCATGCGAG 1139 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | Sbjct 1043 GTAAAATCAACGAGGCATTTGAGCATAAGACATGTGTTAATAAGTCAAGTATTATGCGGG 1102 Query 1140 CAATCATTGCAGCTTACTTCAGGTGTAATGAAGTTGACAATCTTGCTAATTTCGTCAAGC 1199 |||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1103 CAATAATTGCAGCCTACTTCAGGTGTAATGAAGTTGACAATCTTGCTTATTTCGTCAAGC 1162 Query 1200 GTGCTGAGTCTGCTGGGTGGAAACTATGCAGATCTCTCTACCACTGTAAGATCATGATGT 1259 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1163 GTGCTGAGTCTGCTGGCTGGAAACTATGCAGATCTCTCTACCACTGTAAGATCATGATGT 1222 Query 1260 ATGGATCCCAAAAACGCTTTGAAGAAATGGAAGGTGTTGTAAATGAGATGGCAGAGACCA 1319 |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1223 ATGGATCCCAAAAACGTTTTGAAGAAATGGAAGGTGTTTTAAATGAGATGGCAGAGACTA 1282 Query 1320 ATTATGGGCTTGTAACTAAAACGTTCGCCATTATG-ATTAAAGCTTATAAAAACCATGGA 1378 | ||||||||||| ||||||||||||||||||||| || || ||||||||||| |||||| Sbjct 1283 ACTATGGGCTTGTGACTAAAACGTTCGCCATTATGTAT-AAGGCTTATAAAAATCATGGA 1341 Query 1379 ATGGAGTCAGATGCTGAGAAAGTGAAGGGAAAGATGCTGAAACGTGGGCTTTAGATGCAC 1438 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 1342 ATGGAGTCAGATGCTGAGAAAGTGAAGGGAATGATGCTGAAACGTGGGCTTTAGATGAAC 1401 Query 1439 TTCAGTTTGCACAAAGAATTCTGTTGTTTCGATTTGTTCAGTGTCTTTATCAAGTGTGAA 1498 |||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 1402 TTCAATTTGCGCAAAGAATTCTGTTGTTTTGATTTGTTCAGTGTCTTTATCAGGTGTGCG 1461 Query 1499 CTCTGGCCAAACTGAGTATCAAATGGTTAGTGCTGTTTCTGCGTTTTCACAAGTCTCCTG 1558 || | |||||| |||||||| |||||||||||||||||||| ||| || |||||||||| Sbjct 1462 CTGTA-CCAAACAGAGTATCATATGGTTAGTGCTGTTTCTGCCTTTGCATAAGTCTCCTG 1520 Query 1559 TTTATAGTGACTTACCAGGGAGTTGTGCTTAGC-TTTGGTCTCCCTTTTTAGCAATCAGG 1617 |||||||||||||||||||| |||||||||||| ||||||||| |||||| |||||||| Sbjct 1521 TTTATAGTGACTTACCAGGGGGTTGTGCTTAGCATTTGGTCTCTTTTTTTATCAATCAGG 1580 Query 1618 TTGTAGAACTGTCCCCCATGAGGCTGAATAAAAGATGCTGGATATGCTTCCATAATCCGT 1677 |||||||||||| | |||| |||||||||||||||||||||||| |||||||| ||| || Sbjct 1581 TTGTAGAACTGTGCTCCATCAGGCTGAATAAAAGATGCTGGATAGGCTTCCATGATCTGT 1640 Query 1678 CATTAGGGGTTTTGGGATAAGACTAGTCCACAGTTCTTTTC-CGTCATGAGTGACTCAAC 1736 |||||||||||||||||| ||||||| ||||| || ||||| |||||||||||||||||| Sbjct 1641 CATTAGGGGTTTTGGGATGAGACTAGCCCACATTTATTTTCTCGTCATGAGTGACTCAAC 1700 Query 1737 CATCACTAGTCTGCCATAGTTGTACATGTTACAGGCAGGGTTTGAAATTTCCATGGCAGA 1796 | |||||| ||||||||||||||||||||||| ||||| |||| |||| ||||||||||| Sbjct 1701 CGTCACTATTCTGCCATAGTTGTACATGTTACGGGCAGAGTTTAAAATGTCCATGGCAGA 1760 Query 1797 TTTTGATCCTGTTGGCAGATGAGAAACCTCGGTAAAACAAATTCTCTGTGATCCATGAAG 1856 ||||| |||||||| |||||||||||| | || | | | | ||| Sbjct 1761 TTTTGGTCCTGTTGATAGATGAGAAACC-C-------CA--T-----G--A---A-GAA- 1798 Query 1857 AACAGTGCCTGCTCTATCTGGACGTCTTACCTGTGTTTGCCGATACGATTAGAAGAGCTA 1916 |||||||| | ||||||||| | || | | || | | ||| |||||||||||||| Sbjct 1799 --CAGTGCCTCCGCTATCTGGA--TATT-C-T-TGCT-G---ATAGGATTAGAAGAGCTA 1847 Query 1917 TGATTTTCTTCCTATTTGATGGCTCTGCCAAGTGAAGTTATTTCCTTGAAGAGAAACCTG 1976 |||||| |||| || | || ||||||||||||||||||||||||||| |||||||||||| Sbjct 1848 TGATTTCCTTCTTACT-GAAGGCTCTGCCAAGTGAAGTTATTTCCTTAAAGAGAAACCTG 1906 Query 1977 ACCGATGTTGCAGCGGGTTTCTCTTTCTGCCACCCCTGGGTTAAATTTCCAGATTGTCGT 2036 | |||||||||| || ||||||||||||||||||||||||| | |||||||||||| || Sbjct 1907 GCTGATGTTGCAGTGGCTTTCTCTTTCTGCCACCCCTGGGTTCAGTTTCCAGATTGTTGT 1966 Query 2037 AACTTAATTTTTGTTGTTGTTAGGCTATCACAGTCTTACATCCACATACTGCTCTGTTGT 2096 ||| | | | || || | |||||| || ||||||||||||| |||| Sbjct 1967 TG-TTAG-----GCTATCAACAGTCT-T----GTCTTAGATTCACATACTGCTCTATTGT 2015 Query 2097 TTAGGCTTGAGCCCTGTTTGTAAATTTGAGGAAAACAGATAGCTCAGCTACACATGATGT 2156 ||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||| Sbjct 2016 TTAGGCTTGAGCCCTGTTTGTAATTTTAAGGAAACCTGATAGCTCAGCTACACATGATGT 2075 Query 2157 TTCAGTATAGTGAGAC 2172 |||||||||||| ||| Sbjct 2076 TTCAGTATAGTGGGAC 2091 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82084477975 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5