BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30790.1
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933590 jgi|Araly1|933590|scaffold_401578.1 1225 0.0
> Ahg933590 jgi|Araly1|933590|scaffold_401578.1
Length=830
Score = 1225 bits (663), Expect = 0.0
Identities = 768/817 (94%), Gaps = 13/817 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTACAGCCCGAGCTTCTTACACCAGAGTGCACTTGCCTCCTCTGCCGGACGATCA 60
||||| |||||| || ||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 21 ATGGCATACAGCGCGTGCTTCTTGCACCAAAGTGCACTTGCCTCCTCCACCGGACGATCA 80
Query 61 TCATCTTCATCTTCATCGTCGTTTCGTCATGTGTCCCTCTCGAGACCCGTCCATTTAGTA 120
||| | |||| ||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 81 TCA----C--CTTCCTCGTCGTCCCGTCATGTGTCCCTCTCGAGACCTGTCCATTTAGTA 134
Query 121 TGTAGAGCTCAACAGTCTCAGGAAAACAATAACTCTGCTGTTTTCCGCCGTCTTGCCCTT 180
|||||||||||||||||||||||| || ||||||||||||||| |||||||||||| ||
Sbjct 135 TGTAGAGCTCAACAGTCTCAGGAAGACGATAACTCTGCTGTTTCCCGCCGTCTTGCTCTC 194
Query 181 ACCTTACTCGTTGGTGCTGCAGCCATCGGATCCAAAGTCTCT-C--CTG-CGCCGCCTAT 236
|||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 195 ACCTTACTCGTTGGTGCTGCAGCCATCGGATCCAAAGTCTCTCCTGCTGACGCCGCCTAT 254
Query 237 GGTGAAGCCGCTAATGTGTTTGGTAAGCCAAAGAAGAACACAGATTTCCTGCCATACACA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 255 GGTGAAGCCGCTAATGTGTTTGGTAAGCCAAAGAAGAACACAGATTTCCTGCCGTACACT 314
Query 297 GGAGAAGGATTCAAAATCCAGATCCCATCAAAGTGGAACCCAAGTAAAGAAATTGAGTAT 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 315 GGAGAAGGATTCAAAATCCAGATCCCATCAAAGTGGAACCCCAGTAAAGAAATTGAGTAT 374
Query 357 CCAGGACAAGTACTAAGATTCGAGGACAACTTTGACGCCACCAGCAATGTCTCTGTCATG 416
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 CCAGGACAAGTCCTAAGGTTCGAGGACAACTTTGACGCCACCAGCAATGTCTCTGTCATG 434
Query 417 ATCACTCCTACAGACAAGAAATCCATCACTGATTACGGTTCTCCTGAACAGTTCCTCTCT 476
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 435 ATCACTCCTACAGACAAGAAATCCATCACTGATTACGGTTCTCCCGAACAGTTCCTCTCT 494
Query 477 CAGGTGAATTATCTCCTCGGGAA-GCAAGCTTACGTCGGCGAAACAGCCTCTGAGGGAGG 535
||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 495 CAGGTGAATTATCTCCT-GGGAAAGCAAGCTTACTTCGGCGAAACAGCCTCTGAGGGAGG 553
Query 536 GTTTGATGCAAATGCAGTAGCAACTGCAAACATTTTGGAAACATCTACACAAGAAATCGG 595
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 554 GTTTGATGCAAATGCAGTAGCAACTGCAAACATTCTGGAAACATCTACACAAGATATCGG 613
Query 596 AGGGAAAGAATACTATTACTTGTCGGTTCTGACAAGAACAGCTGATGGAGATGAAGGTGG 655
|||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 614 TGGGAAACAGTACTATTACTTGTCGGTTTTGACAAGAACAGCTGATGGAGATGAAGGTGG 673
Query 656 GAAGCACCAACTGATAACAGCCACTGTGAATGGTGGAAAGCTTTACATTTGCAAAGCTCA 715
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 674 GAAGCACCAACTGATAACAGCCACTGTGAACGGTGGAAAGCTTTACATCTGCAAAGCACA 733
Query 716 AGCAGGAGACAAGAGGTGGTTCAAAGGAGCTAGGAAGTTCGTTGAGAATGCTGCTACGTC 775
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 734 AGCAGGAGACAAGAGGTGGTTCAAAGGAGCTAGGAAGTTCGTCGAGAATGCTGCTACTTC 793
Query 776 CTTCAGTGTTGCTTGATA-TGAATCATAAACATTAAT 811
|||||||||||||||| | ||||| ||||||||||||
Sbjct 794 CTTCAGTGTTGCTTGAAACTGAATTATAAACATTAAT 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33395675292
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5