BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30800.1
Length=4267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933591 jgi|Araly1|933591|scaffold_401579.1 6336 0.0
Ahg311738 jgi|Araly1|311738|fgenesh1_pm.C_scaffold_1000518 2076 0.0
> Ahg933591 jgi|Araly1|933591|scaffold_401579.1
Length=3945
Score = 6336 bits (3431), Expect = 0.0
Identities = 3799/3971 (96%), Gaps = 48/3971 (1%)
Strand=Plus/Plus
Query 110 AGAGACAGAGCAAAGCCTAATAAGCGATGGGGAACAAGAGATTCAGGTCTGATAAT-AAT 168
||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1 AGAGAGAGAGCAAACCCTAAT-AGCGATGGGGAACAAGAGATTCAGGTCTGATAATGCA- 58
Query 169 GCAGGGAAACCAACTTCCGTCGAAGCTACTAGGATTTGGGCGACTAAGGTCATCGAAGAC 228
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 GCAGGGAAACCAACTTCCGTCGAAGCTACTAGGATTTGGGCCACTAAGGTCATCGAAGAC 118
Query 229 TTTCGAGCCTCTGGGAACGAAGTTTACACGTTTGAGCATAATCTATCAAATAACGAACGT 288
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 119 TTTCGAGCCTCCGGGAACGAAGTTTACACGTTTGAGCATAATCTATCAAATAGCGAACGT 178
Query 289 GGAGTGATTCATCAGATGTGCAGGAAAATGGGTATTCAATCGAAAAGTTCTGGGCGTGGG 348
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGAGTCATTCATCAGATGTGCCGGAAAATGGGTATTCAATCGAAAAGTTCTGGGCGTGGG 238
Query 349 GAACAAAGGCGTCTTTCGATATTCAAAAGTAGGCATAAGAATGGAAACAAGAATGAAGCT 408
||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 239 GAACAAAGGCGTCTTTCAATATTCAAAAGTAGGCATAAGAATGGAAAGAACAATGAAGCC 298
Query 409 AATGAGAAATCAAATAAAGAGAAGCTCAAATGTGTGTCATTTCCGCCGGGAGCAGATGTT 468
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
Sbjct 299 AATGAGAAATCAAATAAAGAGAAGCTTAAATGTGTGTCATTTCCGCCGGGATCAGATGCT 358
Query 469 ATTCTGCAGGAGTTATTTACTCATTACCCACCTTGTGATGGAGATACGGCTGCAACATCG 528
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 359 ATTCTGCAGGAGTTATTTACTCACTACCCACCTTGTGACGGAGATACCGCTGCAACATCG 418
Query 529 TTTACCAAGTACTCTGGTAACAAGGGTAAACAAGGACAATGGAAAGATGATTTTTTCCGG 588
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTTAACAAGTACTCTGGTAACAAGGGTAAACAAGGACAATGGAAAGATGATTTTTTCCGG 478
Query 589 AAACCACAGATTAGCAGTGAGGAGATTCTAGAAAAAGTGGCATCTTTGAGTTCTAGACTT 648
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 479 AAACCACAGATTAGCAATGAGGAGATTCTTGAAAAAGTGGCATCTTTGAGTTCTAGACTT 538
Query 649 AAGAAGGATAAAGCTCTTAAGGAGATCACTAAGCTGCGGTCAAAGCTTCCCATCACATCC 708
|| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 539 AAAAAGGATAAAGCTCTTAAGGAGATCTCTAAGCTGCGGTCGAAGCTTCCCATCACATCC 598
Query 709 TTTAAAGACGCAATTACATCTGCAGTGGAATCCAATCAGGTTATTCTCATTTCTGGTGAA 768
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TATAAAGACGCAATCACATCTGCAGTGGAATCCAATCAGGTTATTCTCATTTCTGGTGAA 658
Query 769 ACTGGTTGCGGGAAAACTACTCAGGTGCCTCAATATCTTTTAGACCATATGTGGTCAAGC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ACTGGTTGCGGGAAAACTACTCAGGTGCCTCAATATCTTTTAGACCATATGTGGTCAAGC 718
Query 829 AAAAGAGAAACTTGCAAAATTGTTTGCACCCAACCTCGTCGGATATCCGCCATGTCAGTT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAAAGAGAAACTTGCAAAATTGTTTGCACCCAACCTCGTCGGATATCCGCCATGTCAGTT 778
Query 889 TCTGAAAGAATATCTTGTGAAAGAGGTGAAAGCATTGGAGAAAACATTGGTTACAAGGTT 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCTGAAAGAATATCTTGTGAAAGAGGTGAAAGCATTGGAGAAAACATTGGTTACAAGGTT 838
Query 949 CGACTCCAAAGCAAAGGTGGAAGGCACTCATCAGTTGTTTTCTGCACGAATGGTATTCTC 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 839 CGACTCCAAAGCAAAGGTGGAAGGCACTCATCAGTTGTTTTCTGCACGAATGGCATTCTC 898
Query 1009 CTGAGGGTGCTTGTAGGAAAAGGCTCTGTTAGCAGTGTTTCCGACATAACTCACATCATT 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTGAGGGTGCTTGTAGGAAAAGGCTCTGTTAGCAGTGTTTCCGACATAACTCACATCATT 958
Query 1069 GTGGATGAAATCCATGAAAGAGATTGCTATTCTGATTTCATGTTGGCAATTATAAGGGAT 1128
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 GTGGATGAAATCCATGAAAGAGATTGCTATTCTGATTTCATGTTGGCAATAATAAGGGAT 1018
Query 1129 TTGCTTCCATCAAATCCCCATCTCCGTCTGATTCTCATGAGTGCTACGCTTGATGCTGAG 1188
|| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1019 TTACTTCCATCAAATCCTCATCTCCGTTTGATTCTCATGAGTGCTACACTTGATGCTGAG 1078
Query 1189 AGATTTTCTGGATATTTTGGAGGTTGCCCGGTTGTCCGTGTCCCTGGATTCACTTATCCA 1248
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AGATTTTCGGGATATTTTGGAGGTTGCCCGGTTGTCCGTGTCCCTGGATTCACTTATCCA 1138
Query 1249 GTGAGAACCTTATATTTGGAGGATGTGCTCTCTATTCTGAAATCAGGTGGAGATAATCAT 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GTGAGAACCTTATATTTGGAGGATGTGCTCTCTATTCTGAAATCAGGTGGAGATAATCAT 1198
Query 1309 CTAAGCTCTACCAACTTGAGTATATCAGACCACAAGCTTGATTTGACGGATGAGGATAAA 1368
||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1199 CTAAGCTCTGCCAACTTGAGTATACCAGACCACAAGCTTGATTTGACGGATGAAGATAAA 1258
Query 1369 CTTGCTTTAGATGAAGCAATCATCTTGGCTTGGACAAATGACGAGTTTGATGCCCTCTTA 1428
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1259 CTTGCTTTAGATGAAGCAATCATCTTGGCTTGGACAAATGACGAGTTTGATACCCTCTTA 1318
Query 1429 GATCTAGTTTCTTCTAGAGGAAGTCATGAGATCTACAATTATCAGCACCAATCAACCTGG 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GATCTAGTTTCTTCTAGAGGAAGTCATGAGATCTACAATTATCAGCACCAATCAACCTGG 1378
Query 1489 CTAACACCACTAATGGTCTTTGCTGGAAAGGGCAGGATCAGTGATGTCTGCATGCTCCTC 1548
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CTAACACCACTAATGGTCTTTGCTGGAAAGGGCAGGATCAGTGATGTCTGCATGCTCCTA 1438
Query 1549 TCCTTTGGTGCAGATTGGAGCTTAAAGTCTAAAGATGGTATGACTGCATTAGAATTGGCT 1608
|| |||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TCATTTGGTGCGGACTGGAACTTAAAGTCTAAAGATGGTATGACTGCATTAGAATTGGCT 1498
Query 1609 GAAGCAGAGAATCAACTAGAAGCTGCTCAAATAATCAGGGAGCATGCAGACAATTCCCAG 1668
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1499 GAAACAGAGAATCAACTAGAAGCTGCTCAAATAATCAGGGAGCATGCAGACAATTTCCAG 1558
Query 1669 TCTAATTCTCAGCAAGGACAACAGTTACTTGATAAATACATGGCGACAATCAACCCAGAG 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TCTAATTCTCAGCAAGGACAACAGTTACTTGATAAATACATGGCGACAATCAACCCAGAG 1618
Query 1729 CAGGTCGATGTGAGTCTTATACAACAGTTAATGAGGAAAATATGTGGCGATTCAGAAGAC 1788
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1619 CAGGTCGATGTGAGTCTTATACAGCAGTTAATGAGGAAAATATGTGGCGATTCAGAAGAT 1678
Query 1789 GGTGCGATTCTTGTTTTTCTACCTGGATGGGATGATATAAATAAAACAAGACAGAGATTA 1848
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GGTGCCATTCTTGTTTTTCTACCTGGATGGGATGATATAAATAAAACAAGACAGAGATTA 1738
Query 1849 CTTGAGAACCCTTTCTTTGCAGATAGTGCTAAATTCGACATTATATGTCTTCACTCAATG 1908
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CTTGATAACCCTTTCTTCGCAGATAGTGCTAAATTCGACATTATATGTCTTCACTCAATG 1798
Query 1909 GTTCCAGCAGGGGAACAGAAGAAAGTTTTTAATCGCCCCCCTCCAGGTTGTCGCAAAATT 1968
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1799 GTTCCAGCAGGGGAACAGAAGAAAGTTTTTAATCGCCCCCCTCGAGGTTGTCGTAAAATC 1858
Query 1969 GTGCTTGCGACAAATATTGCTGAATCAGCAGTTACCATTGATGATGTGGTTTATGTGATA 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 GTGCTTGCGACAAATATTGCTGAATCAGCAGTTACCATTGATGATGTGGTTTATGTGATA 1918
Query 2029 GATAGTGGCCGGATGAAGGAAAAGAGCTATGATCCTTATAATAATGTTTCAACTCTCCAA 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 GATAGTGGCCGGATGAAGGAAAAGAGCTATGATCCTTATAATAATGTTTCAACTCTCCAA 1978
Query 2089 TCTTCTTGGGTATCAAAAGCAAATGCAAAACAGCGTCAGGGTCGAGCAGGCCGCTGCCAA 2148
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1979 TCTTCTTGGGTATCAAAAGCAAATGCAAAACAGCGTGAGGGTCGAGCAGGCCGCTGCCAA 2038
Query 2149 CCTGGCATTTGTTATCATCTCTATTCTAGACTTCGGGCAGCCTCTATGCCAGATTTTAAA 2208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 CCTGGCATTTGTTATCATCTCTATTCTAGACTTCGGGCAGCCTCTATGCCAGATTTTAAA 2098
Query 2209 GTTCCTGAAATCAAGAGGATGCCGGTAGAAGAACTCTGCTTACAAGTTAAGATACTTGAT 2268
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2099 GTTCCTGAAATCAAGAGGATGCCGGTAGAAGAACTCTGCTTACAGGTTAAGATACTTGAT 2158
Query 2269 CCAAATTGTAAAACAAATGATTTCCTTCAGAAACTGTTGGACCCGCCTGTTGATCAAAGT 2328
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2159 CCAAATTGTAAAACAAATGATTTCCTTCAGAAATTGTTGGACCCGCCTGTTGATCAAAGT 2218
Query 2329 ATTGCAAACGCCTTAAGCATACTACAGGATATTGGTGCCCTGACACCTCAGGAAGAGCTG 2388
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2219 ATTGCAAACGCCTTAAGCATACTACAGGATATCGGGGCCCTGACACCTCAGGAAGAGCTG 2278
Query 2389 ACAGAACTTGGAGAGAAATTTGGTCATCTCCCAGTTCATCCTCTGATTAGCAAAATGCTA 2448
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2279 ACAGAACTTGGAGAGAAATTTGGTCATCTCCCAGTTCATCCTCTGATTAGCAAAATGCTT 2338
Query 2449 TTCTTCGCTGTGTTAGTAAACTGTCTGGATCCAGCACTTACTCTGGCATGTGCAGCAGAC 2508
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2339 TTCTTCGCTGTATTAGTAAACTGTCTGGATCCAGCACTTACTCTGGCATGTGCAGCGGAC 2398
Query 2509 TACAAGGAACCATTTACGATGCCCATGTCGCCTGTTGAAAGACAGAAAGCTGCTGCTGCA 2568
||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||
Sbjct 2399 TACAAGGAACCATTTACTATGCCTATGTCGCCAGGTGAAAGACAGAAAGCTGCTGCTGCA 2458
Query 2569 AAACTTGAACTTGCATCACTTTGTGGAGGTGACAGTGATCACCTTGCAGTTGTTGCTGCC 2628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2459 AAACTTGAACTTGCATCACTTTGTGGAGGTGACAGTGATCACCTTGCAGTTGTTGCTGCC 2518
Query 2629 TTTGAGTGCTGGAAAAACGCAAAAGGAAGAGGTCTTTCAGCAGAGTTTTGCTCTCAGTAC 2688
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 2519 TTTGAGTGCTGGAAAAACGCAAAAGAAAGAGGTCTTTCGGCAGAGTTTTGCTCTCAGTAC 2578
Query 2689 TTTGTCTCTCCAAGTGCTATGAAGATGTTGGATCAAATGCGTAGCCAACTTGAGTCGGAA 2748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2579 TTTGTCTCTCCAAGTGCTATGAAGATGTTGGATCAAATGCGTAGCCAACTTGAGTCGGAA 2638
Query 2749 CTTAAAAGACATGGGATTATTCCTAACGACATTTCAAGTTGTAGCCAAAATTCGCGTGAT 2808
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2639 CTTAAAAGACATGGGATTATTCCTAACGACATTTCTAGTTGTAGCCAAAATTCGCGTGAT 2698
Query 2809 CCCGGTATACTCCGTGCTGTGCTAGCAGTAGGATTGTATCCTATGGTGGGAAGATTGTGC 2868
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2699 CCTGGTATACTCCGTGCTGTGCTAGCAGTAGGATTGTATCCTATGGTGGGAAGATTGTGC 2758
Query 2869 CCAGCTTTTGGTAATAATCGAAGAACTATAGTAGAGACTGCTAGTGGTGCTAAAGTTCGT 2928
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 2759 CCAGCTTTTGGTAATAATCGAAGAACTATAGTAGAAACTGCTAGTGGTGCCAAAGTCCGT 2818
Query 2929 GTCCATTCGCTGTCAAACAACTTCAACTTGTCGTCTAAAAAGTATGATGAATCTTTACTC 2988
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2819 GTGCATTCGCTGTCAAACAACTTCAACTTGTCGTCTAAAAAGTATGATAAATCTTTAGTT 2878
Query 2989 GTTTTCGATGAGATCACTCGTGGAGATGGAGGCATGCACATAAGAAACTGTACTGTTGCT 3048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2879 GTTTTCGATGAGATCACTCGTGGAGATGGAGGCATGCACATAAGAAACTGTACTGTTGCT 2938
Query 3049 CGTGATCTTCCTTTGTTACTTATCTCAACAGAGATAGCTGTGGCCCCTACAGGGAGCAGT 3108
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 2939 CGTGATCTTCCTTTGTTACTTGTCTCAACAGAGATAGCTGTGGCTCCTACAGGGAGCAGT 2998
Query 3109 GATTCTGATGATAGTAATGAAGAAGAAGAAGATGATGAAGAAGTAGCAGCTAATACTAAT 3168
||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 2999 GATTCTGATGATAGTGATGAAGAAGAAGAAGATGAAGAAGAAGTAGGAGCTAATACTAAT 3058
Query 3169 GAAGAAGTAGCAGCTAATACTAATGAAGAAGGAATGGACATACATAAAGAAGAGAGTAGG 3228
||||| ||| ||| | || ||||||||||||||||||||||
Sbjct 3059 GAAGA-----CAG--AAT------G--GA---------CATACATAAAGAAGAGAGTAGG 3094
Query 3229 CGTGGAGCGAAAATGATGTCTTCACCTGAAAATTCAGTCAAGTTAGTAGTTGATCGCTGG 3288
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 3095 CGTGGAGCGAAAATGATGTCTTCACCTGAAAATTCAGTCAAATTGGTAGTTGATCGCTGG 3154
Query 3289 CTGCCTTTCAGAACCACAGCCCTTGAAGTTGCTCAAATGTACATTTTGCGGGAACGACTA 3348
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3155 CTGCCTTTCAGAACCACAGCCCTTGAAGTTGCTCAAATGTACATTTTGCGGGAAAGACTA 3214
Query 3349 ATGGCTTCTATTTTATTCAAGGTAACACATCCACGGGAACATTTGCCACCTCATCTCGGA 3408
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3215 ATGGCGTCTATTTTATTCAAGGTAACACATCCACGGGAACATTTGCCGCCTCATCTCGGA 3274
Query 3409 GCTTCTATGCATGCAATAGCTGGTATTCTCTCATATGATGGTCATGCAGGACTTTCATGT 3468
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 3275 GCTTCTATGCATGCAATAGCTGGTATTCTCTCATATGATGGTCAAGCAGGACTTTCATAT 3334
Query 3469 CCACCGGAGTCTATGGTACCAAAACATTCAAGGACTGAGATGTATGATACCGGTGGATGG 3528
||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 3335 ACACCGGAGTCTATGGGACCAAAACATTCAAGGAATGAGATGTATGATACTGGTGGATGG 3394
Query 3529 GAAGAGAAACCAAACTCTTTCCTTAACTCACTCTTTTGGTCTCTGAGTTTGAAAGAGAAC 3588
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 3395 GAAGAGAAACCAAACTCTTTCCTCAACTCTCTCTTTTGGTCTCTGAGTTTGAAAGAGAAC 3454
Query 3589 AAGCATCCTAGTCACACGAATAGGAATCAGCAGCATAACTACAACATGGCTCCAACAGAA 3648
|||||||| ||||||| ||||||||||| ||||||| | |||||||||||||||||||
Sbjct 3455 AAGCATCCAAGTCACATGAATAGGAATCGGCAGCATGGTTTCAACATGGCTCCAACAGAA 3514
Query 3649 GCTGCATCAATACCTAGGCAGCAAAACTAT-AAGCAAAGAAATCCCAAAGCAACCAACAA 3707
|||||||| ||||| |||||||||||| || |||||||||||||||||| || |||||||
Sbjct 3515 GCTGCATCGATACCGAGGCAGCAAAAC-ATTAAGCAAAGAAATCCCAAATCAGCCAACAA 3573
Query 3708 TACCGATTCGGGTAAGAAGAAAGAGAAGATGTTTGTTAATCCCACCAATAGGATTAACCA 3767
||| |||||||||||||| |||||||||||||||| ||||||||||||| |||| || ||
Sbjct 3574 TACTGATTCGGGTAAGAAAAAAGAGAAGATGTTTGATAATCCCACCAATGGGATCAATCA 3633
Query 3768 GCCTGAAGCTGCTTCTACGGGTAAGCCATCAAAGCACAAATCA-GCCAACAGTTCGGGTT 3826
|||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 3634 GCCTGAAGCTGCTTCTACGGGTAAGCCATCAAAGTACAAATCAAGC-AACAGTTCGGGTG 3692
Query 3827 CGAGTAACAAGAAAGAGAACATGCCTTCTGATCAGGCCTATGGGAATAAGCAACATAACA 3886
| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 3693 CAAGTAACAAGAAAGAGAACATGCCTTCTGATCAGGCCCACGGGAATAAGCAACATAACA 3752
Query 3887 CAGTTCCAAGAGAAGCTGCCGCACCAATGGCGAAGAATCAAAGCAGTAAGAAAACCAAGA 3946
||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 3753 CAGTTCCAAAAGAAGCTGCTGCACCAATGGCGAAGAATCAAAGCAGTAAGAAAAAGAAGA 3812
Query 3947 CCAGGTCAGGCAACAACTCGGATTCGGGTAAGAAGAAAGA-AC--A-GT---A----TA- 3994
|||||||||||||||||||||||||||||||||||||||| | | || | ||
Sbjct 3813 CCAGGTCAGGCAACAACTCGGATTCGGGTAAGAAGAAAGACATGTATGTTCCAAAGATAG 3872
Query 3995 -T-TCCA-AAGAGGCAACGCGAAGACAAAGCAGAACAGAAGTGAGATGCATGAAAAG-AG 4050
| |||| || |||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 3873 ATATCCACAAAAGGCAACGCGAAGACAAAGCAGAACAGAAGGGAGATGCATGAAGACCA- 3931
Query 4051 Attgtttttgg 4061
|||||||||||
Sbjct 3932 ATTGTTTTTGG 3942
> Ahg311738 jgi|Araly1|311738|fgenesh1_pm.C_scaffold_1000518
Length=4743
Score = 2076 bits (1124), Expect = 0.0
Identities = 2247/2774 (81%), Gaps = 137/2774 (5%)
Strand=Plus/Plus
Query 428 AGAAGCTCAAATGTGTGTCATTTCCGCCGGGA-GCAGATGTTATTCTGCAGGAGTTATTT 486
||||||| ||||||||||||||||| || || ||| | | | | ||||| || ||||||
Sbjct 374 AGAAGCTTAAATGTGTGTCATTTCCACC-AGAGGCAAAAGCTGTCCTGCATGACTTATTT 432
Query 487 ACTCATTACCCACCTTGTGATGGAGATACGGCTGCAACATCGTTTACCA-AGTACT-CTG 544
|||| || |||||||||||||| ||||| | | |||||| | | | || | |||
Sbjct 433 ACTCGCTATCCACCTTGTGATGGCGATACTACAGGAACATCACTGGGTATA-TA-TACTG 490
Query 545 GTAACAAGGGTAAACAAGGACAATGGAAAGATGATTTTTTCCGGAAACCACAGATTAG-C 603
| | || || || || | | ||||||||||| || ||| |||||| || ||| | |
Sbjct 491 G--A-AA-CGTCCAC-AGTA-ATTGGAAAGATGACTTCTTCAAGAAACCTCA-ATT-GAC 542
Query 604 -AGTGAGGAGATTCTAGAA-AAAGTGGCATCTTTGAGTTCTAGACT-TAAGAAGGATAAA 660
| | || |||| | || ||||||||||| ||||||||||||| || || || |||
Sbjct 543 AAAAAACGATATTC-AAAATAAAGTGGCATCCCTGAGTTCTAGACTGGAA-AAAGA-AAA 599
Query 661 GC-TCTTAAG-GAGATCACT-AAGCTGCGGTCAAAGCTTCCCATCACATCCTTTAAAGAC 717
| | || || ||||||| | |||| || ||||||||||||||| |||| ||| ||
Sbjct 600 ACGT-TTTAGAGAGATCATTGAAGC-ACGATCAAAGCTTCCCATCGCATCTTTTCGCGAT 657
Query 718 GCAATTACATCTGCAGTGGAATCCAATCAGGTTATTCTCATTTCTGGTGAAACTGGTTGC 777
|| |||| |||||||||||| |||||||||||| |||| ||| ||||||||||||||||
Sbjct 658 GCCATTATATCTGCAGTGGAGTCCAATCAGGTTGTTCTTATTGCTGGTGAAACTGGTTGT 717
Query 778 GGGAAAACTACTCAGGTGCCTCAATATCTTTTAGACCATATGTGGTCA-AGCAA-AAGAG 835
|||||||||||||||||||||||||||||| |||| ||||||||| || || || | ||
Sbjct 718 GGGAAAACTACTCAGGTGCCTCAATATCTTCTAGATCATATGTGG-CATAGTAAGCA-AG 775
Query 836 AAACT-TGCAAAATTGTTTGCACCCAACCTCGTCGGATATCCGCCATGTCAGTTTCTGAA 894
|| | |||||||| ||||||||||||| ||||| || || || || |||||||||||
Sbjct 776 -AAGTGTGCAAAATCATTTGCACCCAACCACGTCGTATCTCAGCTATTTCAGTTTCTGAT 834
Query 895 AGAATATCTTGTGAAAGAGGTGAAAGC-ATTGGAGAAAACAT-T-GGTTACAAGGTTCGA 951
|||||||||| ||||||||||||| | ||||| || ||| | | || |||||||||||
Sbjct 835 CGAATATCTTGGGAAAGAGGTGAAA-CTATTGG-GAGAAC-TGTCGGCTACAAGGTTCGG 891
Query 952 CTCCAAAGCAAAGGTGGAAG-GCACTCATCAGTTGTTTTCTGCACGAATGGTATTCTCCT 1010
|| ||||| |||||||||| | |||||||||||||||||||||||||| ||||| |
Sbjct 892 CTGCAAAGTGAAGGTGGAAGAG-GGTCATCAGTTGTTTTCTGCACGAATGGCATTCTATT 950
Query 1011 GAGGGTGCTTGTAGGAAAAGGCTCTGTTAGCAG-TGT-TTCC-GACATAACTCACATCAT 1067
|||||||||| |||| ||||| | |||| ||| ||| |||| || ||||||||||| ||
Sbjct 951 GAGGGTGCTTATAGGCAAAGG--C-GTTAACAGCTGTGTTCCTGATATAACTCACATTAT 1007
Query 1068 TGTGGATGAAATCCATGAAAGAGATTGCTATTCTGATTTCATGTTGGCAATTATAAGGGA 1127
|||||| |||||||||||||| || | ||| |||||||||||||| ||| |||||||
Sbjct 1008 TGTGGACGAAATCCATGAAAGGGACTCCTACTCTGATTTCATGTTAATGATTTTAAGGGA 1067
Query 1128 TTTGCTTCCATCAAATCCCCATCTCCGTCTGATTCTCATGAGTGCTACGCTTGATGCTGA 1187
|||||||| || ||||| |||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1068 CTTGCTTCCGTCGAATCCTCATCTCCGACTGATTCTAATGAGTGCTACTCTTGATGCTGA 1127
Query 1188 GAGATTTTCTGGA-TATTTTGGAGGTTGCCCGGTTGTCCGTGTCCCTGGATTCACTTATC 1246
||| |||||| || ||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 1128 GAGGTTTTCT-GAGTATTTCGGAGGTTGCCCGGTTGTCCGAGTACCTGGATTCACTTATC 1186
Query 1247 CAGTGAGAACCTTATATT-TGGAGGATGTGCTCTCTATTCTGAAATCAGGTGGAG-ATAA 1304
||||||||||||| | || |||| |||| |||| || | ||||| ||| | || ||||
Sbjct 1187 CAGTGAGAACCTT-TTTTCTGGAAGATGCGCTCGCTGTCCTGAATTCA-GACAAGAATAA 1244
Query 1305 TCATCTAAGCTCTACCAACTTGAGTATATC-AGACCACAAGCTTGATTTGACGGATGAGG 1363
||||||| ||| | ||| || ||| | || |||||| |||||| | ||||| |
Sbjct 1245 TCATCTACTTTCTGCTGACTCGAACATACCAAG-TGACAAGCGTGATTTTAAAGATGAAG 1303
Query 1364 ATAAACTTGCTTTAGATGAAGCAATC-ATCTTGGCTTGGACAAATGACGAGTTTGA-TGC 1421
||||| || ||||||||||||||||| | |||||| ||||||||||| |||||||| ||
Sbjct 1304 ATAAAGTTTCTTTAGATGAAGCAATCGA-CTTGGCATGGACAAATGATGAGTTTGATTG- 1361
Query 1422 CCTCTTAGATCTAGTTTCTTCTAG-AGGAAGTCATGA-GATCTACAATTATCAGCAC-CA 1478
||| ||||||||||||| ||| | ||||||||| || | | |||||||| ||| || ||
Sbjct 1362 TCTCATAGATCTAGTTTCATCT-GAAGGAAGTCACGAGGCT-TACAATTACCAGAACTCA 1419
Query 1479 ATCAACCTGG-CTAACACCACTAATGGTCTTTGCTGGAAAGGGCAGGATCAGTGATGTCT 1537
| | | | || ||||||||||| |||||||||||||||||||||||| | || |||||||
Sbjct 1420 A-CGA-CAGGCCTAACACCACTTATGGTCTTTGCTGGAAAGGGCAGGGTTAGCGATGTCT 1477
Query 1538 GCATGCTCCTCTCCTTTGGTGCAGATTGGAGC-TTAAAGTCTAAAGATGGTATGACTGCA 1596
||| |||||| || ||||| || || || | | | ||||| ||||| ||||| || |||
Sbjct 1478 GCAAGCTCCTTTCATTTGGCGCTGACTGTA-CACTGAAGTCCAAAGAAGGTATAACAGCA 1536
Query 1597 TTAGAATTGGCTGAAGCA-GAGAATCAACTAGAAGCTGCTCAAATAATCAGGGAGCATGC 1655
|||| ||| |||||| | ||||||||| | ||| ||||||||||||||||||| ||||
Sbjct 1537 TTAGTATTAGCTGAA-AAGGAGAATCAATTTGAAACTGCTCAAATAATCAGGGAACATGG 1595
Query 1656 AGACAA-TTCCCAGTCTAATTCTCAGCAAGGACAACAGTTACTTGATAAATACATGGCGA 1714
| || | |||||| ||||||||||||| |||| | ||||||||||| || |||||||
Sbjct 1596 GGGTAACAT-CCAGTCCAATTCTCAGCAAGCACAAGACTTACTTGATAAGTATATGGCGA 1654
Query 1715 CAATCAACCCAG-AGCAGGTCGATGTGAGTCTTATA-CAACAGTTAATGAGGAAAATATG 1772
||||||| |||| || | || |||||| |||||||| | ||||||||| |||||||||
Sbjct 1655 CAATCAAACCAGAAG-AAGTAGATGTGGGTCTTATAGTGA-AGTTAATGAAGAAAATATG 1712
Query 1773 TGGCGATTCAGAAGAC-GGTGCGATTCTTGTTTTTCTACCTGGATGGGATGATATAAATA 1831
|||||||||||| | ||||| ||||||||||||||||| || ||||| || |||| |
Sbjct 1713 CAGCGATTCAGAAG-CTGGTGCCATTCTTGTTTTTCTACCAGGGTGGGAGGAAATAAGGA 1771
Query 1832 AAACAAGACAGAGATTACTTGA-GAACCCTTTCTTTGCAGATAGTGCTAAATTCGA-CAT 1889
|||||| | ||| ||||||||| || | |||| ||||||||||||| ||||||| | |||
Sbjct 1772 AAACAAAAGAGAAATTACTTGATGATCGCTTT-TTTGCAGATAGTGATAAATTC-ATCAT 1829
Query 1890 TATATGTCTTCACTCAATGGTTCCAGCAGGGGAACAGAAGAAAGTTTTTAATCGCCCCCC 1949
| ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1830 TCTATGTCTTCACTCAAGGGTTCCAGCTGAGGAACAGAAGAAAGTTTTTAATCGCCCCCC 1889
Query 1950 TCCAGGTTGTCGCAAAATTGTGCTTGCGACAAATATTGCTGAATCAGCAGTTACCATTGA 2009
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1890 TCGTGGTTGTCGCAAAATTGTGCTTGCGACAAATATTGCTGAATCAGCAGTTACCATCGA 1949
Query 2010 TGATGTGGTTTATGTGATAGATAGTGGCCGGATGAAGGAAAAGAGCTATGATCCTTATAA 2069
|||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||
Sbjct 1950 TGATGTGGTTTATGTGATAGATAGCGGTCGGATGAAGGAAAAGAGTTATGATCCCTATAA 2009
Query 2070 TAATGTTTCAACTCTCCAATCTTCTTGGGTATCAAAAGCAAATGCAAAACAGCGT-CAGG 2128
| |||| ||||| ||||| ||||||||||||||||||||||||||||||||| | | ||
Sbjct 2010 TGATGTGTCAACGCTCCAGTCTTCTTGGGTATCAAAAGCAAATGCAAAACAGAGGGC-GG 2068
Query 2129 GTCGAGCAGGCCGCTGCCAACCTGGCATTTGTTATCATCTCTATTCTAGACTTCGGGCAG 2188
||||||||||||| |||||| ||||||||||||||||||| ||||||| ||| |||||||
Sbjct 2069 GTCGAGCAGGCCGTTGCCAAGCTGGCATTTGTTATCATCTATATTCTAAACTCCGGGCAG 2128
Query 2189 CCTCTATG-CCAGATTTTAAAGTTCCTGAAATCAAGAGGATGCCGGTAGAAGAACTCTGC 2247
| ||| || || || | || |||||||||| | | ||| ||||| || || |||||||||
Sbjct 2129 CGTCTTTGTCC-GAATATAGAGTTCCTGAAGTTATGAGAATGCCAGTGGATGAACTCTGC 2187
Query 2248 TTACAAGTTAAGATACTTGATCCAAATTGTAAAACAAATGATTTCCTTCAGAAACTGTTG 2307
|| || |||||||| || ||||| ||||| || ||||||||||||||| ||| || ||
Sbjct 2188 TTGCAGGTTAAGATGCTGGATCCGAATTGCAACGTAAATGATTTCCTTCACAAATTGATG 2247
Query 2308 GACCCGCCTGTTGATCAAAGTATTGCAAACGCCTTAAGCATACT-ACAGGATATTGGTGC 2366
||||||||||||| ||||||||||||||| ||||||| ||| || | || ||||||| ||
Sbjct 2248 GACCCGCCTGTTGCTCAAAGTATTGCAAATGCCTTAATCATCCTTAAAG-ATATTGGAGC 2306
Query 2367 CCTGACACCTCAGGAAGAGCTGACAGAACTTGGAGAGAAATTTGGTCATCTCCCAGTTCA 2426
|||| ||||| ||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 2307 TTTGACTCCTCAAGAAGAGCTGACAGAACTTGGACAGAAATTTGGTCAGCTTCCAGTTCA 2366
Query 2427 TCCTCTGATTAGCAAAATGCTATTCTT-CGCTGTGTTAGTAAACTGTCTGGATCCAGCAC 2485
||||| ||||||||| ||| | || || ||| | ||||| |||||| ||||||||||||
Sbjct 2367 TCCTCGGATTAGCAAGATGAT-TTATTTCGCCATATTAGTGAACTGTTTGGATCCAGCAC 2425
Query 2486 TTACTCTGGCATGTGCAGCAGACTACAAGGAACCATTTACGATGCCCATGTCGCCTGTTG 2545
||| | ||||||||||||| ||| | ||||| || ||||| |||||| ||||||| | ||
Sbjct 2426 TTATTTTGGCATGTGCAGCCGACGAGAAGGATCCGTTTACTATGCCCTTGTCGCCAGGTG 2485
Query 2546 AAAGACAGAAAG-CTGCTGCTGCAAAACTTGAACTTGCATCACTTTGTGGAGGTGACAGT 2604
| ||| | |||| ||||||| ||||||| |||||||||||| |||| ||||| |||||
Sbjct 2486 ATAGAAA-AAAGGCTGCTGCCGCAAAACATGAACTTGCATCGCTTTATGGAGACCACAGT 2544
Query 2605 GATCACCTTGC-AGTTGTTGCTGCCTTTGAGTGCTGGAAAAACGCAAAAGGAAGAGGTCT 2663
||||| ||||| | | ||||| || ||| ||||||||||||| ||||||| ||| ||||
Sbjct 2545 GATCATCTTGCCACT-GTTGCAGCTTTTCAGTGCTGGAAAAATGCAAAAGAAAGTGGTCA 2603
Query 2664 TTCAGC-A-G-AGTTTTGCTCTCAGTACTTTGTCTCTCCAAGT-G-CTATGAAGATGTTG 2718
||| | | ||||||| ||| ||||||| | || |||| | | | ||||||| | ||
Sbjct 2604 ---AGCTAAGGAGTTTTGTTCTAAGTACTTCATATC-CCAAATTGTC-ATGAAGAGGCTG 2658
Query 2719 GATCAAATGCGTAGCCAA-CTTGAGTCG-GAACTTAAAAGACATGGGATTATTCCTAACG 2776
||| | ||||| || || ||| || | ||||||| ||||||||| | || |||| |
Sbjct 2659 GATGATCTGCGTCGC-AAGCTTCAGG-GAGAACTTAGTAGACATGGGGTCATCCCTA--G 2714
Query 2777 ACATTTCAAGTTGTAGCCAAAATTCGCGTGATCCCGGTATACTCCGTGCTGTGCTAGCAG 2836
|| |||| ||||||| ||| | | |||||| ||||| ||||||||||| ||||||
Sbjct 2715 -CAGCTCAAACTGTAGCCTGAATGCTCATGATCCGGGTATTCTCCGTGCTGTTATAGCAG 2773
Query 2837 TAGGATTGTATCCTATGGTGGGAAG-ATTGTGCCCAGCTTTTGGTAATAATC-GA-A-GA 2892
|||||||||| |||||| ||||||| || |||||||| ||| || |||| || | |
Sbjct 2774 TAGGATTGTACCCTATGTTGGGAAGGAT-GTGCCCAG-TTTCC--AAGAATCAGACAAGG 2829
Query 2893 ACTATAGTAGAGACTGCTAG-TGGTGCTAAAGTTCGTGT-CCATTCGCTGTCAAACAAC- 2949
|| ||||||||||| | | ||| || ||||||||||| || | |||| ||||| ||
Sbjct 2830 TCTGTAGTAGAGACTATT-GCTGGAGCCAAAGTTCGTGTGCCCT-CGCTATCAAAAAATG 2887
Query 2950 TTCAACTTGTCGTCTAAAAAGTATGATGAATCTTTACTCGTTTTCGATGAGATCACTCGT 3009
|| | |||||| |||| |||||||| ||| ||||| | ||||| ||||||||||||||
Sbjct 2888 TTGA-CTTGTCCTCTACCAAGTATGACGAAGCTTTAATTGTTTTTGATGAGATCACTCGA 2946
Query 3010 GGAGAT-GGAGGCATGCACATAAGAAACTGTACTGTTGCT-CGTGATCT-T-CCTTTGTT 3065
|||||| || || |||| ||||||| ||| | |||| || | | || | ||||||||
Sbjct 2947 GGAGATTGG-GGTGTGCAGATAAGAAGCTGCAGTGTT-CTTCCC-A-CTATACCTTTGTT 3002
Query 3066 ACT-TATCTCAACAGAGATAGCTGTGGCCCCTACAGGGAGC-AGTGATTCTGATGATAGT 3123
||| | | |||| ||||||||| || | |||||| |||| | |||| ||| | | |||
Sbjct 3003 ACTGTTT-TCAAGAGAGATAGCCGTTTCTACTACAGAGAGCTA-TGATGCTGTTAAGAGT 3060
Query 3124 AATGAAGAAGAAGA 3137
|||| || |||||
Sbjct 3061 GATGACGAGGAAGA 3074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161364109520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5