BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30810.1
Length=476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481998 jgi|Araly1|481998|fgenesh2_kg.4__1058__AT2G30810.1 464 2e-130
Ahg890911 jgi|Araly1|890911|Al_scaffold_0007_2897 377 3e-104
Ahg930474 jgi|Araly1|930474|scaffold_302931.1 167 7e-41
> Ahg481998 jgi|Araly1|481998|fgenesh2_kg.4__1058__AT2G30810.1
Length=341
Score = 464 bits (251), Expect = 2e-130
Identities = 314/344 (91%), Gaps = 6/344 (2%)
Strand=Plus/Plus
Query 26 AAGAG-ATCAAAATGATGAAGCTCATAGTTGTCTTTGTTATATCCAGTTTGTTGTTTGCT 84
||||| || ||||||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 1 AAGAGAAT-AAAATGATGAAGCTCATAGTTTTCTTTGTTGTATCCAGTTTGTTGTTTTCT 59
Query 85 ACTCAATTTTCTAATGGTGATGAATTAGAGAG-TCAAGCTCAAGCACCTGCAATCCATAA 143
|||||||||||||||||||| ||||||||||| || |||| | ||||| |||||||| ||
Sbjct 60 ACTCAATTTTCTAATGGTGAGGAATTAGAGAGTTC-AGCTGATGCACCAGCAATCCACAA 118
Query 144 GAATGGAGGAGAAGGCTCACTTAAACCAGAAGAATGTCCAAAGGCATGTG-AATATCGAT 202
|| |||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||
Sbjct 119 GACGGGAGGAGAAGGCTCACTTCGACCTGAAGAATGTCCAAAGGCATGTGAAAT-TCGAT 177
Query 203 GTTCGGCGACATCTCACAGGAAACCATGTTTGtttttttGCAACAAATGTTGTAACAAAT 262
|||| ||||||||||||| ||||||||||||||||| |||||||||||||||| |||||
Sbjct 178 GTTCAGCGACATCTCACAAGAAACCATGTTTGTTTTACTGCAACAAATGTTGTAGCAAAT 237
Query 263 GTTTGTGTGTACCATCGGGAACATATGGACACAAAGAAGAATGTCCTTGCTACAATAATT 322
|||| |||||||| || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 GTTTATGTGTACCGTCAGGAACATATGGACACAAAGAAGAATGTCCTTGCTACGATAATT 297
Query 323 GGACGACCAAAGAAGGTGGACCaaaatgtccatgaaaacaaaaa 366
||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 298 GGAGGACCAAAGAAGGTGGACCAAAATGTCCATGATAACAAAAA 341
> Ahg890911 jgi|Araly1|890911|Al_scaffold_0007_2897
Length=321
Score = 377 bits (204), Expect = 3e-104
Identities = 287/326 (88%), Gaps = 10/326 (3%)
Strand=Plus/Plus
Query 37 ATGATGAAGCTCAT-AGTTGTCTTT-GTTATATCCAGTTTGTTGTTTGCTACTCAATTTT 94
||| |||||||||| | || | ||| ||| ||| || |||||||||||||||||||||||
Sbjct 1 ATGGTGAAGCTCATCA-TT-TTTTTAGTTGTATTCATTTTGTTGTTTGCTACTCAATTTT 58
Query 95 CTAATGGTGATGAATTAGAGAGTCAAGCTCAAGCACCTGCAATCCATAAGAATG-GAGGA 153
|||||| ||| | | |||| |||| || | |||||||||||||||||||| ||| | ||
Sbjct 59 CTAATGCTGAGGGACTAGAAAGTCTAGTTGAAGCACCTGCAATCCATAAG-ATGAAAAGA 117
Query 154 GAAGGCTCACTT--AAACCAGAAGAATGTCCAAAGGCATGTGAATATCGATGTTCGGCGA 211
|||||||||||| ||| |||||||||||||| ||||||||||| ||||||||| | ||
Sbjct 118 GAAGGCTCACTTCGAAA--AGAAGAATGTCCAATGGCATGTGAATTTCGATGTTCAGTGA 175
Query 212 CATCTCACAGGAAACCATGTTTGtttttttGCAACAAATGTTGTAACAAATGTTTGTGTG 271
||||||||| |||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 176 CATCTCACAAGAAATCATGTTTGTTTTTCTGTAACAAATGTTGTAACAAATGTTTGTGTG 235
Query 272 TACCATCGGGAACATATGGACACAAAGAAGAATGTCCTTGCTACAATAATTGGACGACCA 331
|||| |||||||||||||||||||||||||||||| |||||||| |||| |||| |||||
Sbjct 236 TACCGTCGGGAACATATGGACACAAAGAAGAATGTGCTTGCTACGATAAATGGAGGACCA 295
Query 332 AAGAAGGTGGACCaaaatgtccatga 357
|| |||||||||||||||||||||||
Sbjct 296 AAAAAGGTGGACCAAAATGTCCATGA 321
> Ahg930474 jgi|Araly1|930474|scaffold_302931.1
Length=493
Score = 167 bits (90), Expect = 7e-41
Identities = 169/206 (82%), Gaps = 10/206 (5%)
Strand=Plus/Plus
Query 137 TCCATAAGAATGGAGGAGAAGGCTCACTTAAACCA--GAAGAATGTCCAAAGGCATGTGA 194
|||| | ||| |||||||| || |||||| || | | | ||||||| ||||||| |
Sbjct 81 TCCA-ATGAA-GGAGGAGAGGGTTCACTT--ACTATTGGACAATGTCCTGCGGCATGT-A 135
Query 195 AT-ATCGATGTTCGGCGACATCTCACAGGAAACCATGTTTGtttttttGCAACAAATGTT 253
|| ||| || || || |||||||| | ||| ||||||||||| | |||||| | ||||
Sbjct 136 ATGTTCGGTGCTCAGCAACATCTCATAAGAAGCCATGTTTGTTCTACTGCAACTATTGTT 195
Query 254 GTAACAAATGTTTGTGTGTACCATCGGGAACATATGGACACAAAGAAGAATGTCCTTGCT 313
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 196 GCAACAAATGTTTGTGTGTACCATCGGGAACGTATGGACATAAAGAAGAATGTCCTTGCT 255
Query 314 ACAATAATTGGACGAC-CAAAGAAGG 338
|||| ||||||| ||| ||| |||||
Sbjct 256 ACAACAATTGGAAGACTCAA-GAAGG 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17246326228
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5