BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30810.1 Length=476 Score E Sequences producing significant alignments: (Bits) Value Ahg481998 jgi|Araly1|481998|fgenesh2_kg.4__1058__AT2G30810.1 464 2e-130 Ahg890911 jgi|Araly1|890911|Al_scaffold_0007_2897 377 3e-104 Ahg930474 jgi|Araly1|930474|scaffold_302931.1 167 7e-41 > Ahg481998 jgi|Araly1|481998|fgenesh2_kg.4__1058__AT2G30810.1 Length=341 Score = 464 bits (251), Expect = 2e-130 Identities = 314/344 (91%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 26 AAGAG-ATCAAAATGATGAAGCTCATAGTTGTCTTTGTTATATCCAGTTTGTTGTTTGCT 84 ||||| || ||||||||||||||||||||| |||||||| ||||||||||||||||| || Sbjct 1 AAGAGAAT-AAAATGATGAAGCTCATAGTTTTCTTTGTTGTATCCAGTTTGTTGTTTTCT 59 Query 85 ACTCAATTTTCTAATGGTGATGAATTAGAGAG-TCAAGCTCAAGCACCTGCAATCCATAA 143 |||||||||||||||||||| ||||||||||| || |||| | ||||| |||||||| || Sbjct 60 ACTCAATTTTCTAATGGTGAGGAATTAGAGAGTTC-AGCTGATGCACCAGCAATCCACAA 118 Query 144 GAATGGAGGAGAAGGCTCACTTAAACCAGAAGAATGTCCAAAGGCATGTG-AATATCGAT 202 || |||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||| Sbjct 119 GACGGGAGGAGAAGGCTCACTTCGACCTGAAGAATGTCCAAAGGCATGTGAAAT-TCGAT 177 Query 203 GTTCGGCGACATCTCACAGGAAACCATGTTTGtttttttGCAACAAATGTTGTAACAAAT 262 |||| ||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| Sbjct 178 GTTCAGCGACATCTCACAAGAAACCATGTTTGTTTTACTGCAACAAATGTTGTAGCAAAT 237 Query 263 GTTTGTGTGTACCATCGGGAACATATGGACACAAAGAAGAATGTCCTTGCTACAATAATT 322 |||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||| Sbjct 238 GTTTATGTGTACCGTCAGGAACATATGGACACAAAGAAGAATGTCCTTGCTACGATAATT 297 Query 323 GGACGACCAAAGAAGGTGGACCaaaatgtccatgaaaacaaaaa 366 ||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 298 GGAGGACCAAAGAAGGTGGACCAAAATGTCCATGATAACAAAAA 341 > Ahg890911 jgi|Araly1|890911|Al_scaffold_0007_2897 Length=321 Score = 377 bits (204), Expect = 3e-104 Identities = 287/326 (88%), Gaps = 10/326 (3%) Strand=Plus/Plus Query 37 ATGATGAAGCTCAT-AGTTGTCTTT-GTTATATCCAGTTTGTTGTTTGCTACTCAATTTT 94 ||| |||||||||| | || | ||| ||| ||| || ||||||||||||||||||||||| Sbjct 1 ATGGTGAAGCTCATCA-TT-TTTTTAGTTGTATTCATTTTGTTGTTTGCTACTCAATTTT 58 Query 95 CTAATGGTGATGAATTAGAGAGTCAAGCTCAAGCACCTGCAATCCATAAGAATG-GAGGA 153 |||||| ||| | | |||| |||| || | |||||||||||||||||||| ||| | || Sbjct 59 CTAATGCTGAGGGACTAGAAAGTCTAGTTGAAGCACCTGCAATCCATAAG-ATGAAAAGA 117 Query 154 GAAGGCTCACTT--AAACCAGAAGAATGTCCAAAGGCATGTGAATATCGATGTTCGGCGA 211 |||||||||||| ||| |||||||||||||| ||||||||||| ||||||||| | || Sbjct 118 GAAGGCTCACTTCGAAA--AGAAGAATGTCCAATGGCATGTGAATTTCGATGTTCAGTGA 175 Query 212 CATCTCACAGGAAACCATGTTTGtttttttGCAACAAATGTTGTAACAAATGTTTGTGTG 271 ||||||||| |||| ||||||||||||| || |||||||||||||||||||||||||||| Sbjct 176 CATCTCACAAGAAATCATGTTTGTTTTTCTGTAACAAATGTTGTAACAAATGTTTGTGTG 235 Query 272 TACCATCGGGAACATATGGACACAAAGAAGAATGTCCTTGCTACAATAATTGGACGACCA 331 |||| |||||||||||||||||||||||||||||| |||||||| |||| |||| ||||| Sbjct 236 TACCGTCGGGAACATATGGACACAAAGAAGAATGTGCTTGCTACGATAAATGGAGGACCA 295 Query 332 AAGAAGGTGGACCaaaatgtccatga 357 || ||||||||||||||||||||||| Sbjct 296 AAAAAGGTGGACCAAAATGTCCATGA 321 > Ahg930474 jgi|Araly1|930474|scaffold_302931.1 Length=493 Score = 167 bits (90), Expect = 7e-41 Identities = 169/206 (82%), Gaps = 10/206 (5%) Strand=Plus/Plus Query 137 TCCATAAGAATGGAGGAGAAGGCTCACTTAAACCA--GAAGAATGTCCAAAGGCATGTGA 194 |||| | ||| |||||||| || |||||| || | | | ||||||| ||||||| | Sbjct 81 TCCA-ATGAA-GGAGGAGAGGGTTCACTT--ACTATTGGACAATGTCCTGCGGCATGT-A 135 Query 195 AT-ATCGATGTTCGGCGACATCTCACAGGAAACCATGTTTGtttttttGCAACAAATGTT 253 || ||| || || || |||||||| | ||| ||||||||||| | |||||| | |||| Sbjct 136 ATGTTCGGTGCTCAGCAACATCTCATAAGAAGCCATGTTTGTTCTACTGCAACTATTGTT 195 Query 254 GTAACAAATGTTTGTGTGTACCATCGGGAACATATGGACACAAAGAAGAATGTCCTTGCT 313 | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 196 GCAACAAATGTTTGTGTGTACCATCGGGAACGTATGGACATAAAGAAGAATGTCCTTGCT 255 Query 314 ACAATAATTGGACGAC-CAAAGAAGG 338 |||| ||||||| ||| ||| ||||| Sbjct 256 ACAACAATTGGAAGACTCAA-GAAGG 280 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17246326228 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5