BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30820.1
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481999 jgi|Araly1|481999|fgenesh2_kg.4__1059__AT2G30820.1 1895 0.0
> Ahg481999 jgi|Araly1|481999|fgenesh2_kg.4__1059__AT2G30820.1
Length=1740
Score = 1895 bits (1026), Expect = 0.0
Identities = 1441/1624 (89%), Gaps = 97/1624 (6%)
Strand=Plus/Plus
Query 195 CGACGGATCGGCTTGTTGAGTAGAGAGCCATGGGTTGTCTCTTCGGTTGCTTCCGTGCTA 254
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 142 CGACGGATTGGCTTGTTGAGTAGAGAGCCATGGGTTGTCTCTTCGGTTGCTTTCGTGCTA 201
Query 255 AAGACGACGAATCTACTACTGATTCCGTTTCTCAAGCCAAA-CATAACAGAGGTCATGAG 313
||||||| ||||||| | ||||||||| |||||||||||| | |||||||||||||||
Sbjct 202 GAGACGACCAATCTACGAATGATTCCGTCTCTCAAGCCAAATC-CAACAGAGGTCATGAG 260
Query 314 TCGAAGAATCGTTTGTCAGCTTTGTTTCTATCT-----G-A---AGCTTCGTCGCCTTGC 364
||||||||||||||||||||||| ||||||||| | | |||||||||||||||
Sbjct 261 TCGAAGAATCGTTTGTCAGCTTTATTTCTATCTGAAGAGAACGCAGCTTCGTCGCCTTGT 320
Query 365 CATGATGACAGAGAGGGATCTAGTTTGAATTCTATGCATATTGATAAAGATCTCAAGGAT 424
|||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||
Sbjct 321 CATGATGACAGAGAGGGATCTAGTTTGAATTCTACGCATATTGACAAAGATCTGAAAGAT 380
Query 425 GACGCACAGTTTCTTAAAGTTTCCTGCGAAATACCAGCGACACCAATTGAAGTTAGGAAC 484
|| ||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||
Sbjct 381 GAGGCACAGTTTCTTAAAGTTTCCAGCGAGATACCAGCGACACCGATTGAAATTAGGAA- 439
Query 485 A-CATCCAAAAAACTGGAAACTCCTAAAGGTGGTGAACATTTACGATCTT-CCC--C--- 537
| ||||||||||||||||||| ||| ||||||||||||||||| | |||| ||| |
Sbjct 440 AGCATCCAAAAAACTGGAAACCCCTCAAGGTGGTGAACATTTAGGGTCTTCCCCTTCTTG 499
Query 538 ---TTCCTGTAACTCTGAAGTAGTGTTTCACTTGAATGAGAAAAAGAATGAGCCCTGTGA 594
|||| |||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 500 GATTTCCAGTAACTCTGATGCAGTGTTTCACTTGGATGAGAAAAAGAATGAGCCCTGTGA 559
Query 595 AGAAATGGGAAGATCATTAGATACTTCAGAGCAAACTCCTAGCAGTTGCTTGACCGATGC 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 560 AGAAATGGGAAGATCATTAGATACTTCAGAGCAAACTCCTAGCAGTTGCTTGACCAATGT 619
Query 655 CCGGAACAATGCAAGGATCTCTTCTGCATCTAGTGATGATAGTGAAGAAAGCATTGGTAC 714
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 620 CCGGAACAATGCAAGGACCTCTTCTGCATCTAGTGATGCTAGTGAAGAAAGCATTGGTAC 679
Query 715 TGTGTTCAGGGATGAGGTGGATAGAA----C----CG---------GC--G-----TTAG 750
|||||||||||||||||||||||||| | || || | |||
Sbjct 680 TGTGTTCAGGGATGAGGTGGATAGAACCGGCAAGGCGACACTCAAAGCTGGAAACATTAC 739
Query 751 AGAAAAGACAAAGTCAGTGCGGTCTGAAATTGACTTTGGTCAATCTTACTCTTCTAGTTC 810
||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||
Sbjct 740 AGAAAAGACAAAGTCAGTGTGGTCTGAAATAGACTTTGATCAATCTCACTCTTCTAGTTC 799
Query 811 TTCCAAAAACAGAACTGCAAGCAAACCTGAAATGGTTGGAAAAACTTCTATCTCAGCTAC 870
|||||||||||| ||| |||| ||||||||||||| ||||||||||| ||||||||| ||
Sbjct 800 TTCCAAAAACAGCACTTCAAGGAAACCTGAAATGGCTGGAAAAACTTTTATCTCAGCAAC 859
Query 871 CTCGCCTTATAC-AACCTCAATGAAGCTATCCGATGAGATTCAAACCCCTGGAACCATTT 929
||||||| || | |||||| ||||||||| | | || | |||||||||||||| |
Sbjct 860 CTCGCCTAAT-CTGACCTCATTGAAGCTAT--G-T--GA-T---ACCCCTGGAACCATCT 909
Query 930 TTCCTGCAAATATGGAATCAGCAGGAAGAGAGAGACGTAGAATCAGGTCTCAGTTTGTGC 989
| |||||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 910 TGCCTGCAAATATGGAATCAGCAGGAAGAGAGAGACCTAGAATCAGGTCGCATTTTGTGC 969
Query 990 ATTCAGCTTCCAATCTAATTGTGAATGCCTCCCTATGTAAG-CTCCACGAAGATTCAAAT 1048
||||||||||||||||||||| ||||||||| |||||||| | ||| ||||| || |||
Sbjct 970 ATTCAGCTTCCAATCTAATTGAAAATGCCTCCTTATGTAAGCCCCCA-GAAGACTCTAAT 1028
Query 1049 GCGAACCTAGAACAAGCTAAAGTTCAGGCTTACAAAGAGAAGACAGAAAATGAATCTCCC 1108
| || ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1029 GAGAGCCTAGAACAAGCTAAAGTTCAAGCTTGCAAAGAGAAGACAGAAAATGAATCTCCC 1088
Query 1109 ACATCAACAATATGTG-GGGAAAAGTTGGAAGAGAGTTCAGATGGaaaaaaaCAGATAGG 1167
||||||||||| |||| ||| |||||||||||||||||||||| | || |||||
Sbjct 1089 ACATCAACAATTTGTGAGGG-AAAGTTGGAAGAGAGTTCAGAT-G-----AA-AGATACC 1140
Query 1168 T-GAAATTAGTAGTTCTCC-T-----TTATCCATAAATCCTGGAGACAGACCTATCATTG 1220
| |||| |||||| ||||| | || ||||||| |||||||||||||||||||||||
Sbjct 1141 TCGAAACTAGTAGCTCTCCTTGGGCCTTCTCCATAACTCCTGGAGACAGACCTATCATTG 1200
Query 1221 GAATGGTTGCTGCTCATTGGAATGAGAAAGAGCATTCTCAAATCTCACCCAAATGGTGGG 1280
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1201 GAATGGTTGCTGCGCATTGGAATGAGAAAGAGCAATCTCAAATCTCACCCAAATGGTGGG 1260
Query 1281 ATGGTAATGGGATACCAAACTCTACAAACAAGTACAAAGAGGACCAGAAAGTGAGTTGGC 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ATGGTAATGGGATACCAAACTCTACAAACAAGTACAAAGAGGACCAGAAAGTGAGTTGGC 1320
Query 1341 ATGCAACACCTTTCGAAGAGAGATTAGAGAAGGCACTTTCAGAAGAAGGTGGTCAAGGTT 1400
| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1321 ACGCAACACCATTCGAAGAGAGATTAGAGATGGCACTTTCAGAAGAAGGTGGTCAAGATT 1380
Query 1401 TCATTCCTCCAAGGAGACTTGGAACAGTAGAAGAGTCTGAAAGGGACACAGCTATATCAC 1460
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1381 TCATTCCTCCAAGGAGACTTGGAACAGTGGAAGAGTCTGAAAGGGACACAGCTATATCAC 1440
Query 1461 ATCTGCGACATTC-----A------GTCA-T--TT-CCTTTTGAA-AGCCGTGTAGTGTC 1504
||||||||||||| | |||| | || ||||||||| | | | ||||||||
Sbjct 1441 ATCTGCGACATTCGGCGCAATCTATGTCAGTCATTTCCTTTTGAACATC-GAGTAGTGTC 1499
Query 1505 TACTGAGAT-CCTGAAA-TGGAGCAACGGTGAGGTCCCATCGAGTCCTCTAGCCAAGTAA 1562
|||||| | ||| ||| |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1500 CACTGAGGTACCT-AAAGTGGAGCAATGGTGAG-TCCCATCGAGTCCTCTAGCCAAGTAA 1557
Query 1563 TGCCTCGCCATCTCGGTCGTGGTTGTGTTTCTGTACTTGGGAGGGTTTTGTTTAGATAGA 1622
|| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1558 TGTCTCGCCATCTCGGTCGTGGTTGTGTCTCTGTACTTGGGAGGGTTTTGTTCAGATAGA 1617
Query 1623 AGCTCTTTCATAGGTCCATATACTTGCTCATTTGGTATGGTGTGCATGAAGAAAGATGCG 1682
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AGCTCTTTAATAGGTC-ATATACTTGCTCATTTGGTATGGTGTGCATGAAGAAAGATGCG 1676
Query 1683 CTTGAAATGCGAGGTTCTTCGCCTCTATTTGCCAAAACCCTGTGCTCCACACTTACAAAC 1742
||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1677 CTTGAAATGCGTGGTTCTTCGCCTTTATTTGCCAAAACTCTGTGCTCCACACTTACAAAC 1736
Query 1743 TTAT 1746
||||
Sbjct 1737 TTAT 1740
Score = 158 bits (85), Expect = 2e-37
Identities = 135/156 (87%), Gaps = 15/156 (10%)
Strand=Plus/Plus
Query 1 ACCACCACCAACATTCTCTTTCTCTCTCACTTTCTCGGGAAACTATTTTTCCCTCCTCAT 60
|||| |||||||| |||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1 ACCATCACCAACACTCTCTTTCTCTCTCACTTTCTCGGGAAAATA-TTTTCCCTCCTCAT 59
Query 61 TGAGAGTGTTTGGTTGTTGTAGGTTCCTCCATCGCTGTTCCTTTTTTACCACCAATATAA 120
| || | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 T--GA----------G--GTAGGTTCCTCCATCGCTGTTCCTTTTTTACCACCAATAAAA 105
Query 121 TTCAAATCACGACATTACAGAAACGCTTCATAATTG 156
||||||| ||||||||| ||||||||||||||||||
Sbjct 106 TTCAAATTACGACATTAGAGAAACGCTTCATAATTG 141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5