BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30840.1
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482001 jgi|Araly1|482001|fgenesh2_kg.4__1061__AT2G30840.1 1615 0.0
> Ahg482001 jgi|Araly1|482001|fgenesh2_kg.4__1061__AT2G30840.1
Length=1163
Score = 1615 bits (874), Expect = 0.0
Identities = 1032/1108 (93%), Gaps = 12/1108 (1%)
Strand=Plus/Plus
Query 7 GAAGAAGAAGATGGAAGCAACATACGATCGTGCTAGTGAGGTAAAAGCTTTTGACGAGTT 66
|||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |
Sbjct 1 GAAGAAGAAGATGGAAGCAAAAAACGATCGTGCTAGTGAGGTAAAAGCTTTCGACGAGAT 60
Query 67 GAAGATCGGCGTAAAAGGTCTCCTAGACGCCGGAGTTACTCAGATCCCACGTATCTTCCA 126
||||||||||||||| |||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 61 GAAGATCGGCGTAAAGGGTCTCGTCGACACCGGAGTTACTCAGATCCCACGTATCTTCCA 120
Query 127 TCATCCACATCTTAATTTAACCGACTCAAATCTACTTCTTTCCTCTACAACGATGGTTAT 186
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCACCCACATCTCAGTTTAACCGACTCAAATCTACTTCTTTCCTCTACAACGATGGTTAT 180
Query 187 ACCAACAATCGATCTTAAAGGAGGCGTGTTCGACGAGTACACAGTCACGCGAGAGAGCGT 246
|||||| |||||||| || ||||||||||||||||||| ||||||||||||||||| |||
Sbjct 181 ACCAACGATCGATCTCAATGGAGGCGTGTTCGACGAGTCCACAGTCACGCGAGAGAACGT 240
Query 247 CATCGCGATGATCAGAGACGCGGTTGAG-AGATTCGGGTTTTTCCAGGTGATTAACCATG 305
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 241 GATCGCGATGATCAGAGACGCGGTTGAGAAG-TTCGGGTTTTTCCAGGTGATTAACCATG 299
Query 306 GGATTAGTAATGATGTTATGGAGAAGATGAAAGATGGGATTCGTGGGTTTCATGAGCAAG 365
||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 GGATTCCTATTGATGTTATGGAGAAGATGAAATATGGGATTCGTGGGTTTCATGAGCAAG 359
Query 366 ACTCAGACGTTAGGAAAAAGTTTTATACTCGTGACGTCACCAAAACA-GTTAAGTATAAC 424
|||||||||| |||||||||||||||||||||||| ||||||||| | || |||||||||
Sbjct 360 ACTCAGACGTGAGGAAAAAGTTTTATACTCGTGACATCACCAAAA-AGGTCAAGTATAAC 418
Query 425 AGTAATTTTGATCTTTATAGCTCTCCTTCAGCGAACTGGAGAGATACCTTGAGTTGCTTT 484
|||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 419 AGTAATTTCGATCTTTATAGCTCTCCTTCAGCTAATTGGAGAGATACCTTGAGTTGTTTT 478
Query 485 ATGGCTCCTGATGTTCC-AGAAACAGAGGACTTACCAGATATTTGTGGGGAAATCATGTT 543
||| | ||||||||||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct 479 ATGTCCCCTGATGTTCCTA-AAACAGAGGACTTACCAGATATTTGTGGGGAAATTATGTT 537
Query 544 GGAATATGCGAAACGAGTGATGAAACTAGGGGAACTAATCTTTGAGCTTTTATCAGAAGC 603
||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGAGTATTCGAGACGAGTGATGAAACTAGGGGAACTAATCTTTGAGCTTTTATCAGAAGC 597
Query 604 TTTAGGGCTGAATCCTAACCACTTGAAAGAAATGGATTGCACAAAAGGTTTATTGATGCT 663
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTTAGGGCTGGATCCTAACCACTTGAAAGAAATGGATTGCACAAAAGGTTTATTGATGCT 657
Query 664 TTCTCATTACTACCCGCCTTGTCCTGAGCCTGGT-TTAACTTTTGGCACAAGTCCGCATT 722
||||||||| |||||||||||||||||||||| | || ||||| || ||||||| |||||
Sbjct 658 TTCTCATTATTACCCGCCTTGTCCTGAGCCTGATCTT-ACTTTCGGTACAAGTCAGCATT 716
Query 723 CAGACAGATCTTTTCTCACTATTCTTCTTCAAGATCACATTGGTGGGCTTCAAGTTCGTC 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 CAGACAGATCTTTTCTCACTATTCTTCTTCAAGATCACATTGGTGGGCTTCAAGTTCTTC 776
Query 783 AGAATGGTTATTGGGTTGATGTTCCTCCTGTTCCGGGAGCTCTTCTCGTTAACCTCGGAG 842
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 777 AGAATGGTTACTGGGTTGATGTTCCTCCTGTTCCAGGAGCTCTTCTCGTTAATCTCGGAG 836
Query 843 ATCTTTTACAGCTTATGACCAATGATCA-GTTTGTGAGCGTAGAGCATAGAGTTCTGGCT 901
||||||||||||||||||| ||| | || |||| ||||||| || ||||||||| |||||
Sbjct 837 ATCTTTTACAGCTTATGACGAATAA-CAAGTTTTTGAGCGTGGAACATAGAGTTTTGGCT 895
Query 902 AATAAAGGTGAAAAGCCGCGGATCTCAGTAGCATCTTTCTTTGTGCATCCTTTACCGAGT 961
|||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 896 AATAGAGGGGAAGAGCCGCGGATCTCAGTCGCATCTTTCTTTGTGCATCCTTTACCGAGT 955
Query 962 TTACGAGTTTATGGACCGATAAAAGAACTTTTGTCTGAGCAAAACCTTCCCAAGTATAGA 1021
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 956 TTGCGAGTTTATGGACCGATAAAAGAGCTTTTGTCTGAGCAAAACCTTCCCAAGTATAGA 1015
Query 1022 GACACTACCGTCACTGAGTACACGAGTCATTACATGGCAAGAGGACTTTATGG-AAATTC 1080
|||||||| |||| ||||||||| | ||||||||||| |||||||| |||| |||| |
Sbjct 1016 GACACTACAGTCAGTGAGTACACAAACCATTACATGGCGAGAGGACTCGATGGGAAAT-C 1074
Query 1081 TGTGTTGCTTGATTTCAAGATCTGATAA 1108
||||||||||||||||||||||||||||
Sbjct 1075 TGTGTTGCTTGATTTCAAGATCTGATAA 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46929310827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5