BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30860.1
Length=971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482003 jgi|Araly1|482003|fgenesh2_kg.4__1063__AT2G30860.1 1181 0.0
> Ahg482003 jgi|Araly1|482003|fgenesh2_kg.4__1063__AT2G30860.1
Length=887
Score = 1181 bits (639), Expect = 0.0
Identities = 787/855 (92%), Gaps = 24/855 (3%)
Strand=Plus/Plus
Query 117 aaaaagagaagaaagaaaaaTGGTGCTAAAGGTGTACGGACCTCACTTTGCTTCACCAAA 176
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 57 AAAGAGAGAAGAAAGAAAGATGGTGCTAAAGGTGTACGGACCTCACTTTGCTTCACCAAA 116
Query 177 GAGAGCTTTGGTCACACTGATCGAGAAGGGCGTTGCCTTCGAGACCATCCCCGTCGATCT 236
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GCGAGCTTTGGTAACGTTGATCGAGAAGGGCGTTGCCTTCGAGACCATCCCCGTCGATCT 176
Query 237 CATGAAAGGAGAACACAAGCAGCCTGCTTATCTCGCTCTACAGCCTTTTGGTACTGTTCC 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 177 CATGAAAGGAGAACACAAGCAGCCTGCTTATCTCGCTCTACAGCCTTTTGGTACCGTTCC 236
Query 297 TGCTGTTGTTGACGGTGACTACAAAATCTTCGAGTCCCGTGCGGTGATGAGGTACGTAGC 356
||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 237 TGCTGTTGTCGACGGAGACTACAAAATCTTCGAATCACGTGCGGTGATGAGGTACGTAGC 296
Query 357 TGAGAAGTACAGGTCACAAGGACCTGATCTTTTGGGGAAAACCGTTGAAGACAGAGGTCA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGAGAAGTACAGGTCACAAGGACCTGATCTTTTGGGGAAAACCGTTGAAGACAGAGGTCA 356
Query 417 AGTTGAACAATGGCTTGATGTGGAAGCGACCACTTACCACCCACCGCTATTGAACTTAAC 476
||| || |||||||| || |||||||| |||||||||||||||||||| |||||||| ||
Sbjct 357 AGTGGAGCAATGGCTCGACGTGGAAGCCACCACTTACCACCCACCGCTCTTGAACTTGAC 416
Query 477 GCTTCACATAATGTTCGCATCAGTCATGGGATTCCCATCTGATGAGAAGCTGATCAAGGA 536
||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 GCTACACATAATGTTTGCATCAGTCATGGGATTCCCATCTGATGAGAAACTGATCAAGGA 476
Query 537 GAGTGAAGAGAAGCTTGCGGGTGTTCTTGATGTCTACGAGGCACATCTCTCAAAGAGCAA 596
||| || |||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 477 GAGCGAGGAGAAGCTCGCGGGTGTTCTCGATGTGTACGAGGCACATCTCTCGAAGAGCAA 536
Query 597 GTACTTGGCCGGTGACTTCGTGAGCTTGGCTGATTTGGCTCACCTCCCGTTCACTGATTA 656
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTACTTGGCCGGTGATTTCGTGAGCTTGGCTGATTTGGCTCACCTCCCGTTCACTGATTA 596
Query 657 CTTGGTTGGTCCGATTGGGAAAGCTTACATGATCAAAGATAGGAAACACGTGAGCGCGTG 716
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 CTTGGTTGGTCCGATTGGGAAGGCTTACATGATCAAAGATAGGAAACACGTGAGCGCGTG 656
Query 717 GTGGGATGATATTAGCAGCCGTCCTGCGTGGAAGGAGACTGTTGCCAAGTATTCATTCCC 776
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 657 GTGGGATGATATTAGCAGCCGTCCTGCGTGGAAGGAGACTCTTGCCAAGTACTCATTCCC 716
Query 777 AGCTTAAGATGTGTTCATCTTCTTGGTGATGTGGTTTGTGTTTTATGAGAGGTTTAATAA 836
||||||||| |||| ||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 717 GGCTTAAGATAAGTTCTTCTTCTTGGTGATGTTGTTTGCGTTTTATGTGAGGTTTAATAA 776
Query 837 AAGTGGAACTAAATGTACCTCTTAATGTAATGTTGCCACCTCTGTGTTCTCTTTCCTTTT 896
||||||| | | |||||| | ||||||||||||||||||||
Sbjct 777 AAGTGGA--TG--T-TACCTC--------------C----TCTGTGTTCTCTTTCCTTTT 813
Query 897 GTAGTTTAATAAGTATCTTTATGGCTTTGTGAGGCTTTCAATTTTAAGGAAATGATCTTT 956
|||||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||
Sbjct 814 GTAGTTTAATAAGTATATCTATCGCTTTGTGAGGCTTTCAATTT-AAGGAAATGATCTTT 872
Query 957 TCCCCTAGTTCTACT 971
|||||||||| ||||
Sbjct 873 TCCCCTAGTTTTACT 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36064279482
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5